List of works by Pamela Ronald

A GRF-GIF chimeric protein improves the regeneration efficiency of transgenic plants

scientific article published on 12 October 2020

A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity

scientific article

A Genome-Scale Co-Functional Network of Genes Can Accurately Reconstruct Regulatory Circuits Controlled by Two-Component Signaling Systems

article

A conserved threonine residue in the juxtamembrane domain of the XA21 pattern recognition receptor is critical for kinase autophosphorylation and XA21-mediated immunity

scientific article

A genome-wide survey of switchgrass genome structure and organization

scientific article

A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice

scientific article published on 12 May 2020

A microbially derived tyrosine-sulfated peptide mimics a plant peptide hormone

scientific article published on 30 May 2017

A novel system for gene silencing using siRNAs in rice leaf and stem-derived protoplasts

scientific article published on 29 June 2006

A rice kinase-protein interaction map

article

A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation

scientific article published on 21 February 2012

A second-generation expression system for tyrosine-sulfated proteins and its application in crop protection

scientific article (publication date: 18 April 2016)

A single transcription factor promotes both yield and immunity in rice

scientific article published on 01 September 2018

A two-genome microarray for the rice pathogens Xanthomonas oryzae pv. oryzae and X. oryzae pv. oryzicola and its use in the discovery of a difference in their regulation of hrp genes

scientific article

A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity

scientific article

A viral resistance gene from common bean functions across plant families and is up-regulated in a non-virus-specific manner

scholarly article

A web-based tool for the prediction of rice transcription factor function

scientific article published on 01 January 2019

Abundance of mixed linkage glucan in mature tissues and secondary cell walls of grasses

scientific article published on 8 January 2013

Alteration of TGA factor activity in rice results in enhanced tolerance to Xanthomonas oryzae pv. oryzae

scientific article published in August 2005

An ATPase promotes autophosphorylation of the pattern recognition receptor XA21 and inhibits XA21-mediated immunity

scientific article

An XA21-associated kinase (OsSERK2) regulates immunity mediated by the XA21 and XA3 immune receptors

scientific article

An efficient method for visualization and growth of fluorescent Xanthomonas oryzae pv. oryzae in planta

scientific article published on 30 September 2008

Antagonistic Interactions Between Strains of Xanthomonas oryzae pv. oryzae

scientific article published on 01 June 2003

Assessing probe-specific dye and slide biases in two-color microarray data

scientific article

Bacterial Outer Membrane Vesicles Induce Plant Immune Responses

scientific article published on 29 February 2016

Bacterial genes involved in type I secretion and sulfation are required to elicit the rice Xa21-mediated innate immune response

scientific article published on June 2004

Biosynthesis and secretion of the microbial sulfated peptide RaxX and binding to the rice XA21 immune receptor

scientific article published on 04 April 2019

Cell Wall Composition and Bioenergy Potential of Rice Straw Tissues Are Influenced by Environment, Tissue Type, and Genotype

article

Cell Wall Composition and Candidate Biosynthesis Gene Expression During Rice Development

scientific article

Cleavage and nuclear localization of the rice XA21 immune receptor

scientific article published on 26 June 2012

Combining multivariate analysis and monosaccharide composition modeling to identify plant cell wall variations by Fourier Transform Near Infrared spectroscopy.

scientific article

Construction and application of efficient Ac-Ds transposon tagging vectors in rice

scientific article published in November 2009

Construction of a rice glycoside hydrolase phylogenomic database and identification of targets for biofuel research

scientific article (publication date: 2013)

Construction of a rice glycosyltransferase phylogenomic database and identification of rice-diverged glycosyltransferases

scientific article

Correction: A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity

scientific article published on 6 July 2016

Correction: Rice XB15, a Protein Phosphatase 2C, Negatively Regulates Cell Death and XA21-Mediated Innate Immunity.

scientific article published on 25 November 2008

Correction: Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses

scientific article published on 23 April 2015

Darwinian genomics and diversity in the tree of life

scientific article published on 18 January 2022

Development of an integrated transcript sequence database and a gene expression atlas for gene discovery and analysis in switchgrass (Panicum virgatum L.).

scientific article

Direct calibration of PICKY-designed microarrays.

scientific article

Distribution and inheritance of a gene cluster encoding a sulfated tyrosine peptide in Xanthomonas spp

article

Ectopic expression of rice Xa21 overcomes developmentally controlled resistance to Xanthomonas oryzae pv. oryzae ⬇️

scientific article published on November 1, 2010

Elucidation of XA21-mediated innate immunity.

scientific article published on 25 June 2010

Engineering temporal accumulation of a low recalcitrance polysaccharide leads to increased C6 sugar content in plant cell walls

scientific article published on 14 January 2015

Enhanced disease resistance and hypersensitivity to BTH by introduction of an NH1/OsNPR1 paralog

scientific article published in February 2011

Fertility versus disease resistance, a hard choice

scientific article

Four receptor-like cytoplasmic kinases regulate development and immunity in rice

scientific article

Four tyrosine residues of the rice immune receptor XA21 are not required for interaction with the co-receptor OsSERK2 or resistance to pv.

scientific article published on 11 December 2018

From the Academy: Colloquium review. Unique characteristics of Xanthomonas oryzae pv. oryzae AvrXa21 and implications for plant innate immunity

scholarly article

Genetic Engineering for Disease Resistance in Plants: Recent Progress and Future Perspectives

article

Genetic and biotechnological approaches for biofuel crop improvement

scientific article published on 22 February 2010

Genetic dissection of the biotic stress response using a genome-scale gene network for rice.

scientific article published on 31 October 2011

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

article

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.

scientific article

Genome sequence of the model rice variety KitaakeX

scientific article published on 27 November 2019

Genome sequencing and analysis of the model grass Brachypodium distachyon

scientific article

Genomic mechanisms of climate adaptation in polyploid bioenergy switchgrass

scientific article published on 27 January 2021

Global identification and characterization of transcriptionally active regions in the rice genome

scientific article

Identification and functional analysis of light-responsive unique genes and gene family members in rice

scientific article

Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm

scientific article

Inactivation of OsIRX10 Leads to Decreased Xylan Content in Rice Culm Cell Walls and Improved Biomass Saccharification

article

Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins

scientific article

KBase: The United States Department of Energy Systems Biology Knowledgebase

article

Loss of Cellulose synthase-like F6 function affects mixed-linkage glucan deposition, cell wall mechanical properties, and defense responses in vegetative tissues of rice

scientific article

Loss of function of a rice TPR-domain RNA-binding protein confers broad-spectrum disease resistance

scientific article published on 5 February 2018

Loving memories of Dr. Ko Shimamoto

scientific article published on 10 December 2013

Marker-exchange mutagenesis and complementation strategies for the Gram-negative bacteria Xanthomonas oryzae pv. oryzae.

scientific article published in January 2007

Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9

scientific article published on 04 March 2020

Mechanical Stress Analysis as a Method to Understand the Impact of Genetically Engineered Rice and Arabidopsis Plants

article

Mechanism and function of root circumnutation

scientific article

Molecular determinants of disease and resistance in interactions of Xanthomonas oryzae pv. oryzae and rice

scientific article

Mutation of the rice XA21 predicted nuclear localization sequence does not affect resistance to Xanthomonas oryzae pv. oryzae

scientific article published on 05 October 2016

Non-arginine-aspartate (non-RD) kinases are associated with innate immune receptors that recognize conserved microbial signatures

scientific article published on 31 May 2012

Non-invasive imaging of cellulose microfibril orientation within plant cell walls by polarized Raman microspectroscopy

scientific article

OsSERK1 regulates rice development but not immunity to Xanthomonas oryzae pv. oryzae or Magnaporthe oryzae

scientific article

OsWRKY IIa Transcription Factors Modulate Rice Innate Immunity

scientific article

OsWRKY62 is a negative regulator of basal and Xa21-mediated defense against Xanthomonas oryzae pv. oryzae in rice

scientific article published in May 2008

Overexpression of Rice Auxilin-Like Protein, XB21, Induces Necrotic Lesions, up-Regulates Endocytosis-Related Genes, and Confers Enhanced Resistance to Xanthomonas oryzae pv. oryzae

scientific article

Overexpression of Rice Wall-Associated Kinase 25 (OsWAK25) Alters Resistance to Bacterial and Fungal Pathogens

scientific article published on 21 January 2016

Overexpression of Thiamin Biosynthesis Genes in Rice Increases Leaf and Unpolished Grain Thiamin Content But Not Resistance to Xanthomonas oryzae pv. oryzae

scientific article published on 10 May 2016

Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification

scientific article published on 7 February 2013

Overexpression of a rice BAHD acyltransferase gene in switchgrass (Panicum virgatum L.) enhances saccharification

article

Overexpression of a rice NPR1 homolog leads to constitutive activation of defense response and hypersensitivity to light

scientific article published in June 2005

Overexpression of the endoplasmic reticulum chaperone BiP3 regulates XA21-mediated innate immunity in rice

scientific article

Paladin, a tyrosine phosphatase-like protein, is required for <i>XA21</i>-mediated immunity in rice

scientific article published on 29 June 2021

Pamela Ronald: The case for engineering our food

TED2015

Phylogenomics databases for facilitating functional genomics in rice

scientific article published on 30 July 2015

Plant and animal pathogen recognition receptors signal through non-RD kinases

scientific article published in January 2006

Plant genetics, sustainable agriculture and global food security

scientific article

Plant innate immunity: perception of conserved microbial signatures

scientific article published on 09 February 2012

Protein abundances are more conserved than mRNA abundances across diverse taxa

scientific article

Protein phosphorylation in plant immunity: insights into the regulation of pattern recognition receptor-mediated signaling

scientific article

Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice

scientific article published in 2006

Protein-protein interactions of tandem affinity purified protein kinases from rice

scientific article

Proteome profile of the endomembrane of developing coleoptiles from switchgrass (Panicum virgatum).

scientific article published on 16 March 2015

Purification of soluble and active RaxH, a transmembrane histidine protein kinase from Xanthomonas oryzae pv. oryzae required for AvrXa21 activity

scientific article published in January 2007

RaxH/RaxR: a two-component regulatory system in Xanthomonas oryzae pv. oryzae required for AvrXa21 activity

scientific article published on June 2004

Recent advances in dissecting stress-regulatory crosstalk in rice

scientific article

Reduced expression of glycolate oxidase leads to enhanced disease resistance in rice

scientific article

Reference genome sequence of the model plant Setaria

scientific article

Refinement of light-responsive transcript lists using rice oligonucleotide arrays: evaluation of gene-redundancy

scientific article

Retracted: Small Protein-Mediated Quorum Sensing in a Gram-Negative Bacterium

retracted article

Retraction. A type I-secreted, sulfated peptide triggers XA21-mediated innate immunity

scientific article published in October 2013

Retraction: Small protein-mediated quorum sensing in a gram-negative bacterium

Rice BiP3 regulates immunity mediated by the PRRs XA3 and XA21 but not immunity mediated by the NB-LRR protein, Pi5.

scientific article published on 26 April 2014

Rice NRR, a negative regulator of disease resistance, interacts with Arabidopsis NPR1 and rice NH1.

scientific article

Rice Pi5-mediated resistance to Magnaporthe oryzae requires the presence of two coiled-coil-nucleotide-binding-leucine-rich repeat genes

scientific article published on 19 January 2009

Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae

scientific article

Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity

scientific article

RiceNet v2: an improved network prioritization server for rice genes

scientific article published on 26 March 2015

SUB1A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway.

scientific article published on 18 March 2013

Secretion, modification, and regulation of Ax21.

scientific article published on 12 January 2011

Silencing of the Rice Gene LRR1 Compromises Rice Xa21 Transcript Accumulation and XA21-Mediated Immunity

scientific article

Strong suppression of systemic acquired resistance in Arabidopsis by NRR is dependent on its ability to interact with NPR1 and its putative repression domain

scientific article published on 22 April 2008

Structural characterization of a mixed-linkage glucan deficient mutant reveals alteration in cellulose microfibril orientation in rice coleoptile mesophyll cell walls

scientific article

Structure of the OsSERK2 leucine-rich repeat extracellular domain

scientific article

Suppression of bacterial infection in rice by treatment with a sulfated peptide.

scientific article

Target of rapamycin signaling orchestrates growth-defense trade-offs in plants.

scientific article

The Rice Kinase Phylogenomics Database: a guide for systematic analysis of the rice kinase super-family

scientific article

The Rice Oligonucleotide Array Database: an atlas of rice gene expression

scientific article published on 19 July 2012

The Rice Xa3 Gene Confers Resistance to Xanthomonas oryzae pv. oryzae in the Model Rice Kitaake Genetic Background

scientific article published on 06 February 2020

The Sequences of 1,504 Mutants in the Model Rice Variety Kitaake Facilitate Rapid Functional Genomic Studies

scientific article

The Use of a Dexamethasone-inducible System to Synchronize Xa21 Expression to Study Rice Immunity

scientific article published on May 2015

The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles

scientific article published in 2014

The Xanthomonas oryzae pv. oryzae PhoPQ two-component system is required for AvrXA21 activity, hrpG expression, and virulence

scientific article

The durably resistant rice cultivar Digu activates defence gene expression before the full maturation of Magnaporthe oryzae appressorium.

scientific article published on 10 June 2015

The endoplasmic reticulum-quality control component SDF2 is essential for XA21-mediated immunity in rice

scientific article published on 14 May 2013

The phylogenetically-related pattern recognition receptors EFR and XA21 recruit similar immune signaling components in monocots and dicots

scientific article published on 21 January 2015

The plant glycosyltransferase clone collection for functional genomics.

scientific article

The rice XA21 ectodomain fused to the Arabidopsis EFR cytoplasmic domain confers resistance to Xanthomonas oryzae pv. oryzae.

scientific article

The rice genome. The most precious things are not jade and pearls

scientific article

The rice immune receptor XA21 recognizes a tyrosine-sulfated protein from a Gram-negative bacterium

scientific article

The rice kinase database. A phylogenomic database for the rice kinome

scientific article

Three Novel Rice Genes Closely Related to the Arabidopsis IRX9, IRX9L, and IRX14 Genes and Their Roles in Xylan Biosynthesis

scientific article published on 10 April 2013

Top 10 plant pathogenic bacteria in molecular plant pathology

scientific article

Towards a better bowl of rice: assigning function to tens of thousands of rice genes

scientific article published on February 2008

Towards establishment of a rice stress response interactome

scientific article

Transcriptional dynamics during cell wall removal and regeneration reveals key genes involved in cell wall development in rice

scientific article published on 2 September 2011

Transcriptome profiling analysis using rice oligonucleotide microarrays

scientific article

Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses

scientific article

Transgenic expression of the rice Xa21 pattern-recognition receptor in banana (Musa sp.) confers resistance to Xanthomonas campestris pv. musacearum

scientific article

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

scientific article

Tyrosine sulfation in a Gram-negative bacterium

scientific article published in January 2012

Updated Rice Kinase Database RKD 2.0: enabling transcriptome and functional analysis of rice kinase genes

scientific article published on 19 August 2016

Use of Nipponbare BAC clones for physical mapping of an R gene locus in rice.

scientific article published in January 2007

Variation and inheritance of the Xanthomonas raxX-raxSTAB gene cluster required for activation of XA21-mediated immunity

scientific article published on 18 February 2019

WheatNet: a Genome-Scale Functional Network for Hexaploid Bread Wheat, Triticum aestivum

scientific article published on 24 April 2017

XA21-specific induction of stress-related genes following Xanthomonas infection of detached rice leaves.

scientific article published on 28 September 2016

XAX1 from glycosyltransferase family 61 mediates xylosyltransfer to rice xylan.

scientific article

Xanthomonas oryzae pathovars: model pathogens of a model crop

scientific article published on 01 September 2006

Yeast two-hybrid approaches to dissecting the plant defense response

scientific article

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