List of works - Anne-Laure Boulesteix

A CART-based approach to discover emerging patterns in microarray data

scientific article

A measure of the impact of CV incompleteness on prediction error estimation with application to PCA and normalization.

scientific article published on 4 November 2015

A plea for neutral comparison studies in computational sciences

scientific article

AUC-RF: a new strategy for genomic profiling with random forest

scientific article published on 11 October 2011

Added predictive value of high-throughput molecular data to clinical data and its validation

scientific article

An AUC-based permutation variable importance measure for random forests

scientific article

Assessment of predictive performance in incomplete data by combining internal validation and multiple imputation

scientific article published on 26 October 2016

Bias in random forest variable importance measures: illustrations, sources and a solution

scientific article

Breath isoprene concentrations in persons undergoing general anesthesia and in healthy volunteers

scientific article

Categorical variables with many categories are preferentially selected in bootstrap-based model selection procedures for multivariable regression models

scientific article

Centrosome abnormalities in head and neck squamous cell carcinoma (HNSCC).

scientific article

Combining location-and-scale batch effect adjustment with data cleaning by latent factor adjustment

scientific article

Conditional variable importance for random forests

scientific article

Correcting the optimal resampling-based error rate by estimating the error rate of wrapper algorithms

scientific article

Cross-study validation for the assessment of prediction algorithms

scientific article

Differential expression of the chemokines GRO-2, GRO-3, and interleukin-8 in colon cancer and their impact on metastatic disease and survival

scientific article

Effects of aprotinin dosage on renal function: an analysis of 8,548 cardiac surgical patients treated with different dosages of aprotinin

scientific article published in February 2008

Erratum to: Assessment of predictive performance in incomplete data by combining internal validation and multiple imputation

scientific article published on 5 December 2016

Essential guidelines for computational method benchmarking.

scientific article

Exhaled breath volatile organic and inorganic compound composition in end-stage renal disease

scientific article published on 22 July 2016

Gender mismatch in allograft aortic valve surgery

scientific article published on 18 June 2015

Gram-negative and -positive bacteria differentiation in blood culture samples by headspace volatile compound analysis

scientific article

Guest Editorial-Special Collection Topic: Statistical Systems Theory in Cancer Modeling, Diagnosis, and Therapy.

scientific article published on 5 March 2018

Homografts in aortic position: does blood group incompatibility have an impact on patient outcomes?

scientific article published on 6 February 2013

Improving cross-study prediction through addon batch effect adjustment or addon normalization

scientific article published on 22 October 2016

Independent validation of a new reirradiation risk score (RRRS) for glioma patients predicting post-recurrence survival: A multicenter DKTK/ROG analysis

scientific article published on 9 February 2018

Influence of diatoms on copepod reproduction. II. Uncorrelated effects of diatom-derived α,β,γ,δ-unsaturated aldehydes and polyunsaturated fatty acids on Calanus helgolandicus in the field

Inhibition of radiation induced migration of human head and neck squamous cell carcinoma cells by blocking of EGF receptor pathways

scientific article

Interleukin-22 is elevated in lavage from patients with lung cancer and other pulmonary diseases

scientific article

Investigating the prediction ability of survival models based on both clinical and omics data: two case studies

scientific article

Iterative reconstruction of high-dimensional Gaussian Graphical Models based on a new method to estimate partial correlations under constraints

scientific article

Letter to the Editor: On the term 'interaction' and related phrases in the literature on Random Forests

scientific article published on 09 April 2014

Live music reduces stress levels in very low-birthweight infants.

scientific article

Machine learning versus statistical modeling.

scientific article published on 26 February 2014

Methylation of tumor-related genes in neoadjuvant-treated gastric cancer: relation to therapy response and clinicopathologic and molecular features

scientific article published in September 2007

Methylene Blue halves the long-term recurrence rate in acute pilonidal sinus disease

scientific article published on 25 October 2007

Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value

scientific article published on 9 June 2008

Mid-term outcomes of patients with PCI prior to CABG in comparison to patients with primary CABG.

scientific article

Multiple testing for SNP-SNP interactions

scientific article

On representative and illustrative comparisons with real data in bioinformatics: response to the letter to the editor by Smith et al.

scientific article published on 8 August 2013

On stability issues in deriving multivariable regression models

scientific article published on 15 December 2014

On the necessity and design of studies comparing statistical methods

scientific article published on 29 November 2017

Optimal classifier selection and negative bias in error rate estimation: an empirical study on high-dimensional prediction

scientific article

Over-optimism in bioinformatics research

scientific article published on 26 November 2009

Over-optimism in bioinformatics: an illustration

scientific article

Overview of random forest methodology and practical guidance with emphasis on computational biology and bioinformatics

PLS dimension reduction for classification with microarray data

scientific article

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data

scientific article

Pitfalls of hypothesis tests and model selection on bootstrap samples: Causes and consequences in biometrical applications

scientific article published on 15 September 2015

Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach

scientific article

Publication Bias in Methodological Computational Research

scientific article

Random forest Gini importance favours SNPs with large minor allele frequency: impact, sources and recommendations

scientific article published on 10 September 2011

Random forest versus logistic regression: a large-scale benchmark experiment

scholarly article by Raphael Couronné published in July 2018

Reader's reaction to "Dimension reduction for classification with gene expression microarray data" by Dai et al (2006).

scientific article

Regularized estimation of large-scale gene association networks using graphical Gaussian models

scientific article

Stability and aggregation of ranked gene lists

scientific article published on September 2009

Stability investigations of multivariable regression models derived from low- and high-dimensional data

scientific article

Subsampling versus bootstrapping in resampling-based model selection for multivariable regression

scientific article published on 19 August 2015

Surgery for asymptomatic pilonidal sinus disease

scientific article published on 20 May 2008

Ten simple rules for reducing overoptimistic reporting in methodological computational research

scientific article

Testing the additional predictive value of high-dimensional molecular data

scientific article

Time and rate of sinus formation in pilonidal sinus disease.

scientific article published in April 2008

Towards evidence-based computational statistics: lessons from clinical research on the role and design of real-data benchmark studies

scientific article published on 9 September 2017

Unbiased split selection for classification trees based on the Gini Index

What is the "normal" fetal heart rate?

scientific article

WilcoxCV: an R package for fast variable selection in cross-validation

scientific article

List of works by Anne-Laure Boulesteix

A CART-based approach to discover emerging patterns in microarray data

A measure of the impact of CV incompleteness on prediction error estimation with application to PCA and normalization.

A plea for neutral comparison studies in computational sciences

AUC-RF: a new strategy for genomic profiling with random forest

Added predictive value of high-throughput molecular data to clinical data and its validation

An AUC-based permutation variable importance measure for random forests

Assessment of predictive performance in incomplete data by combining internal validation and multiple imputation

Bias in random forest variable importance measures: illustrations, sources and a solution

Breath isoprene concentrations in persons undergoing general anesthesia and in healthy volunteers

Categorical variables with many categories are preferentially selected in bootstrap-based model selection procedures for multivariable regression models

Centrosome abnormalities in head and neck squamous cell carcinoma (HNSCC).

Combining location-and-scale batch effect adjustment with data cleaning by latent factor adjustment

Conditional variable importance for random forests

Correcting the optimal resampling-based error rate by estimating the error rate of wrapper algorithms

Cross-study validation for the assessment of prediction algorithms

Differential expression of the chemokines GRO-2, GRO-3, and interleukin-8 in colon cancer and their impact on metastatic disease and survival

Effects of aprotinin dosage on renal function: an analysis of 8,548 cardiac surgical patients treated with different dosages of aprotinin

Erratum to: Assessment of predictive performance in incomplete data by combining internal validation and multiple imputation

Essential guidelines for computational method benchmarking.

Exhaled breath volatile organic and inorganic compound composition in end-stage renal disease

Gender mismatch in allograft aortic valve surgery

Gram-negative and -positive bacteria differentiation in blood culture samples by headspace volatile compound analysis

Guest Editorial-Special Collection Topic: Statistical Systems Theory in Cancer Modeling, Diagnosis, and Therapy.

Homografts in aortic position: does blood group incompatibility have an impact on patient outcomes?

Improving cross-study prediction through addon batch effect adjustment or addon normalization

Independent validation of a new reirradiation risk score (RRRS) for glioma patients predicting post-recurrence survival: A multicenter DKTK/ROG analysis

Influence of diatoms on copepod reproduction. II. Uncorrelated effects of diatom-derived α,β,γ,δ-unsaturated aldehydes and polyunsaturated fatty acids on Calanus helgolandicus in the field

Inhibition of radiation induced migration of human head and neck squamous cell carcinoma cells by blocking of EGF receptor pathways

Interleukin-22 is elevated in lavage from patients with lung cancer and other pulmonary diseases

Investigating the prediction ability of survival models based on both clinical and omics data: two case studies

Iterative reconstruction of high-dimensional Gaussian Graphical Models based on a new method to estimate partial correlations under constraints

Letter to the Editor: On the term 'interaction' and related phrases in the literature on Random Forests

Live music reduces stress levels in very low-birthweight infants.

Machine learning versus statistical modeling.

Methylation of tumor-related genes in neoadjuvant-treated gastric cancer: relation to therapy response and clinicopathologic and molecular features

Methylene Blue halves the long-term recurrence rate in acute pilonidal sinus disease

Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value

Mid-term outcomes of patients with PCI prior to CABG in comparison to patients with primary CABG.

Multiple testing for SNP-SNP interactions

On representative and illustrative comparisons with real data in bioinformatics: response to the letter to the editor by Smith et al.

On stability issues in deriving multivariable regression models

On the necessity and design of studies comparing statistical methods

Optimal classifier selection and negative bias in error rate estimation: an empirical study on high-dimensional prediction

Over-optimism in bioinformatics research

Over-optimism in bioinformatics: an illustration

Overview of random forest methodology and practical guidance with emphasis on computational biology and bioinformatics

PLS dimension reduction for classification with microarray data

Partial least squares: a versatile tool for the analysis of high-dimensional genomic data

Pitfalls of hypothesis tests and model selection on bootstrap samples: Causes and consequences in biometrical applications

Predicting transcription factor activities from combined analysis of microarray and ChIP data: a partial least squares approach

Publication Bias in Methodological Computational Research

Random forest Gini importance favours SNPs with large minor allele frequency: impact, sources and recommendations

Random forest versus logistic regression: a large-scale benchmark experiment

Reader's reaction to "Dimension reduction for classification with gene expression microarray data" by Dai et al (2006).

Regularized estimation of large-scale gene association networks using graphical Gaussian models

Stability and aggregation of ranked gene lists

Stability investigations of multivariable regression models derived from low- and high-dimensional data

Subsampling versus bootstrapping in resampling-based model selection for multivariable regression

Surgery for asymptomatic pilonidal sinus disease

Ten simple rules for reducing overoptimistic reporting in methodological computational research

Testing the additional predictive value of high-dimensional molecular data

Time and rate of sinus formation in pilonidal sinus disease.

Towards evidence-based computational statistics: lessons from clinical research on the role and design of real-data benchmark studies

Unbiased split selection for classification trees based on the Gini Index

What is the "normal" fetal heart rate?

WilcoxCV: an R package for fast variable selection in cross-validation