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List of works by Jacques Corbeil

2017 Outbreak of Ebola Virus Disease in Northern Democratic Republic of Congo

scientific article published on 01 February 2020

2HAPI: a microarray data analysis system.

scientific article

A Lactococcal Phage Protein Promotes Viral Propagation and Alters the Host Proteomic Response During Infection

scientific article published on 24 July 2020

A general framework for analyzing data from two short time-series microarray experiments.

scientific article

A new Microviridae phage isolated from a failed biotechnological process driven by Escherichia coli.

scientific article

A new perspective on V3 phenotype prediction.

scientific article

A new serotyping method of S. pneumoniae using an automated microarray-based assay

scientific article

Antiproliferative effect of retinoid compounds on Kaposi's sarcoma cells

scientific article

Antiproliferative effects of enediynes on AIDS-derived Kaposi's sarcoma cells.

scientific article published in August 1994

Bendamustine (Treanda) displays a distinct pattern of cytotoxicity and unique mechanistic features compared with other alkylating agents.

scientific article

Characterization of cytokine gene expression associated with noninfectious human immunodeficiency virus retinopathy in human autopsy eyes.

scientific article published in June 2010

Characterization of frataxin gene network in Friedreich's ataxia fibroblasts using the RNA-Seq technique

scientific article published on 25 June 2016

Clostridium difficile: Investigating Transmission Patterns Between Infected and Colonized Patients Using Whole Genome Sequencing ⬇️

article

Clostridium difficile: Investigating Transmission Patterns Between Symptomatic and Asymptomatic Patients Using Whole Genome Sequencing.

scientific article published on 4 October 2017

Communities of Phytoplankton Viruses across the Transition Zone of the St. Lawrence Estuary

scientific article

Comparative gene expression analysis of blood and brain provides concurrent validation of SELENBP1 up-regulation in schizophrenia

scientific article

Comparison of Automated Microarray Detection with Real-Time PCR Assays for Detection of Respiratory Viruses in Specimens Obtained from Children

scientific article published in April 2010

Comparison of risk factors for human metapneumovirus and respiratory syncytial virus disease severity in young children.

scientific article published on 2 May 2012

Complete Genome Sequence of Escherichia coli Siphophage BRET

scientific article published on 31 January 2019

Complete Genome Sequence of Streptococcus thermophilus SMQ-301, a Model Strain for Phage-Host Interactions

scientific article published on 21 May 2015

Correlation between Clostridium difficile bacterial load, commercial real-time PCR cycle thresholds, and results of diagnostic tests based on enzyme immunoassay and cell culture cytotoxicity assay.

scientific article published on 21 August 2013

Culture-enriched human gut microbiomes reveal core and accessory resistance genes

article

Cutting edge: a novel viral TNF receptor superfamily member in virulent strains of human cytomegalovirus.

scientific article published on June 1999

Differential expression profiles of apoptosis-affecting genes in HIV-infected cell lines and patient T cells

scientific article published on 01 February 1999

Diminished somatostatin gene expression in individuals with HIV and major depressive disorder.

scientific article published in November 2006

Draft Genome Sequence of Criibacterium bergeronii gen. nov., sp. nov., Strain CCRI-22567T, Isolated from a Vaginal Sample from a Woman with Bacterial Vaginosis

scientific article

Draft Genome Sequence of Romboutsia maritimum sp. nov. Strain CCRI-22766T, Isolated from Coastal Estuarine Mud.

scientific article published on 12 October 2017

Draft Genome Sequence of Romboutsia weinsteinii sp. nov. Strain CCRI-19649T Isolated from Surface Water.

scientific article published on 5 October 2017

Draft Genome Sequence of a Sporulating and Motile Strain of Lachnotalea glycerini Isolated from Water in Québec City, Canada

scientific article published on 19 October 2017

Early modifications of host cell gene expression induced by HIV-1 ⬇️

scientific article published on April 16, 1998

Effect of micromechanical stimulations on osteoblasts: development of a device simulating the mechanical situation at the bone-implant interface

scientific article published on 01 January 2003

Effects of antiretroviral drugs on human immunodeficiency virus type 1-induced CD4(+) T-cell death.

scientific article

Endonucleases: tools to correct the dystrophin gene.

scientific article published on October 2011

Enhancement of HIV-1-induced syncytium formation in T cells by the tyrosyl kinase p56lck.

scientific article published on April 1997

Epitope mapping of the 2009 pandemic and the A/Brisbane/59/2007 seasonal (H1N1) influenza virus haemagglutinins using mAbs and escape mutants.

scientific article

Evolution of oseltamivir resistance mutations in Influenza A(H1N1) and A(H3N2) viruses during selection in experimentally infected mice.

scientific article

Feature Selection with Conjunctions of Decision Stumps and Learning from Microarray Data.

scientific article

First Complete Genome Sequence of Staphylococcus xylosus, a Meat Starter Culture and a Host to Propagate Staphylococcus aureus Phages.

scientific article published on 10 July 2014

Gene amplification and point mutations in pyrimidine metabolic genes in 5-fluorouracil resistant Leishmania infantum

scientific article

Gene expression analysis of osteoblastic cells contacted by orthopedic implant particles.

scientific article published in September 2002

Gene expression profiling and molecular characterization of antimony resistance in Leishmania amazonensis

scientific article

Genetic basis of hypersusceptibility to protease inhibitors and low replicative capacity of human immunodeficiency virus type 1 strains in primary infection

scientific article published on March 2004

Genome-Wide Screen for Haploinsufficient Cell Size Genes in the Opportunistic Yeast Candida albicans

scientific article published on 30 December 2016

Genome-wide stochastic adaptive DNA amplification at direct and inverted DNA repeats in the parasite Leishmania

scientific article published on 20 May 2014

Genomic characterization of a large outbreak of Legionella pneumophila serogroup 1 strains in Quebec City, 2012

scientific article

Gln-tRNAGln synthesis in a dynamic transamidosome from Helicobacter pylori, where GluRS2 hydrolyzes excess Glu-tRNAGln

scientific article published on 3 August 2011

Global Mapping of the Macrophage-HIV-1 Transcriptome Reveals that Productive Infection Induces Remodeling of Host Cell DNA and Chromatin

scientific article published on 12 July 2017

HIV Downregulates Interferon-Stimulated Genes in Primary Macrophages ⬇️

scientific article published on December 31, 2012

HIV-induced apoptosis of activated primary CD4+ T lymphocytes is not mediated by Fas-Fas ligand.

scientific article

HIV-induced apoptosis requires the CD4 receptor cytoplasmic tail and is accelerated by interaction of CD4 with p56lck.

scientific article

HIV/SIV infection primes monocytes and dendritic cells for apoptosis.

scientific article

Human Analysts at Superhuman Scales: What Has Friendly Software To Do?

scientific article published on December 2013

Human viral pathogens are pervasive in wastewater treatment center aerosols.

scientific article

Identification and biophysical assessment of the molecular recognition mechanisms between the human haemopoietic cell kinase Src homology domain 3 and ALG-2-interacting protein X

scientific article

Improving the safety of Staphylococcus aureus polyvalent phages by their production on a Staphylococcus xylosus strain.

scientific article

Inhibition of ceramide-induced apoptosis by Bcl-2.

scientific article

Interferon gene expression following HIV type 1 infection of monocyte-derived macrophages.

scientific article

Interpretable genotype-to-phenotype classifiers with performance guarantees

scientific article published on 11 March 2019

Large-scale gene expression analysis of osteoblasts cultured on three different Ti-6Al-4V surface treatments

scientific article published on 01 November 2002

MHC-NP: predicting peptides naturally processed by the MHC.

scientific article published on 18 October 2013

Machine learning assisted design of highly active peptides for drug discovery

scientific article (publication date: April 2015)

Mass spectra alignment using virtual lock-masses

scientific article published on 11 June 2019

Metagenomic analysis of stress genes in microbial mat communities from Antarctica and the High Arctic.

scientific article

Microarray truths and consequences.

scientific article published in August 2004

Mitogen-activated protein kinase pathways defend against bacterial pore-forming toxins.

scholarly article

Modulation of gene expression in Leishmania drug resistant mutants as determined by targeted DNA microarrays ⬇️

scientific article published on October 15, 2003

Modulation of gene expression in drug resistant Leishmania is associated with gene amplification, gene deletion and chromosome aneuploidy.

scientific article published on 18 July 2008

Molecular and cellular analysis of human immunodeficiency virus-induced apoptosis in lymphoblastoid T-cell-line-expressing wild-type and mutated CD4 receptors

scientific article

Molecular evolution of respiratory syncytial virus fusion gene, Canada, 2006-2010.

scientific article published in January 2012

Nasopharyngeal carriage of individual Streptococcus pneumoniae serotypes during pediatric radiologically confirmed community acquired pneumonia following PCV7 introduction in Switzerland.

scientific article

Nevirapine resistance mutations of human immunodeficiency virus type 1 selected during therapy

scientific article

Nonpathogenesis of simian immunodeficiency virus infection is associated with reduced inflammation and recruitment of plasmacytoid dendritic cells to lymph nodes, not to lack of an interferon type I response, during the acute phase.

scientific article published on 25 November 2009

Partial recovery of microbiomes after antibiotic treatment.

scientific article published on 5 August 2016

Phenetic Comparison of Prokaryotic Genomes Using k-mers.

scientific article

Predictive computational phenotyping and biomarker discovery using reference-free genome comparisons.

scientific article

Productive HIV-1 infection of primary CD4+ T cells induces mitochondrial membrane permeabilization leading to a caspase-independent cell death.

scientific article published on 31 October 2001

Productive in vitro infection of human umbilical vein endothelial cells and three colon carcinoma cell lines with HIV-1.

scientific article

Productive infection and subsequent interaction of CD4-gp120 at the cellular membrane is required for HIV-induced apoptosis of CD4+ T cells.

scientific article published on March 1995

Quinolinic acid production is related to macrophage tropic isolates of HIV-1

scientific article published on December 1, 1995

R5 and X4 HIV viruses differentially modulate host gene expression in resting CD4+ T cells.

scientific article published in March 2008

Ray Meta: scalable de novo metagenome assembly and profiling.

scientific article

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

scientific article

Recombination leads to the rapid emergence of HIV-1 dually resistant mutants under selective drug pressure.

scientific article published on June 1996

Role of CD95-activated caspase-1 processing of IL-1beta in TCR-mediated proliferation of HIV-infected CD4(+) T cells.

scientific article

Serotyping of Streptococcus pneumoniae based on capsular genes polymorphisms.

scientific article

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

scientific article published in December 2002

Targeted Proteomics of Human Metapneumovirus in Clinical Samples and Viral Cultures.

scientific article published on 16 September 2015

Telomeric gene deletion and intrachromosomal amplification in antimony‐resistant Leishmania ⬇️

scholarly article by Angana Mukherjee et al published April 2013 in Molecular Microbiology

The EcoChip: A Wireless Multi-Sensor Platform for Comprehensive Environmental Monitoring

scientific article published on 31 October 2018

The Ick protein tyrosine kinase is not involved in antibody-mediated CD4 (CDR3-loop) signal transduction that inhibits HIV-1 transcription.

scientific article published in May 1998

The initial state of the human gut microbiome determines its reshaping by antibiotics.

scientific article published on 11 September 2015

The resistome of Pseudomonas aeruginosa in relationship to phenotypic susceptibility

scientific article

The role of surface CD4 in HIV-induced apoptosis.

scientific article

The transcription factor Egr1 regulates the HIF-1alpha gene during hypoxia.

scientific article

Use of keyword hierarchies to interpret gene expression patterns.

scientific article published in April 2001

Virological importance of the protease-cleavage site in human immunodeficiency virus type 1 Nef is independent of both intravirion processing and CD4 down-regulation.

scientific article published in November 1998

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