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List of works by Nikos Paragios

(Hyper)-graphical models in biomedical image analysis

scientific article published on 23 June 2016

3D Knowledge-Based Segmentation Using Pose-Invariant Higher-Order Graphs

scientific article published on 01 January 2010

A Discrete MRF Framework for Integrated Multi-Atlas Registration and Segmentation

article published in 2016

A Framework for Efficient Structured Max-Margin Learning of High-Order MRF Models

scientific article published in July 2015

A Machine Learning Methodology for Enzyme Functional Classification Combining Structural and Protein Sequence Descriptors

scholarly article by Afshine Amidi et al published 2016 in Lecture Notes in Computer Science

A Probabilistic Atlas of Diffuse WHO Grade II Glioma Locations in the Brain.

scientific article published on 11 January 2016

A level set approach for shape-driven segmentation and tracking of the left ventricle

scientific article

A radiomics approach to assess tumour-infiltrating CD8 cells and response to anti-PD-1 or anti-PD-L1 immunotherapy: an imaging biomarker, retrospective multicohort study

scientific article published in September 2018

AI-Driven CT-based quantification, staging and short-term outcome prediction of COVID-19 pneumonia

scientific article published on 22 April 2020

AI-driven quantification, staging and outcome prediction of COVID-19 pneumonia

scientific article published on 15 October 2020

An automated computed tomography score for the cystic fibrosis lung

scientific article published on 04 June 2018

An explicit shape-constrained MRF-based contour evolution method for 2-D medical image segmentation

scientific article published in January 2014

Approximated Curvature Penalty in Non-rigid Registration Using Pairwise MRFs

Artificial intelligence applications for thoracic imaging

scientific article published on 11 December 2019

Atlas-based deformable mutual population segmentation

Automatic inference of articulated spine models in CT images using high-order Markov Random Fields

scientific article published on February 12, 2011

Automatic single- and multi-label enzymatic function prediction by machine learning

scientific article published on 29 March 2017

Bioluminescence enhancement through fusion of optical imaging and cinematic video flow

Biomedical image analysis using Markov random fields & efficient linear programing

scientific article published in January 2009

COMBING: Clustering in Oncology for Mathematical and Biological Identification of Novel Gene Signatures

scientific article published in 2022

Clustering of the human skeletal muscle fibers using linear programming and angular Hilbertian metrics

scientific article published in January 2009

Clustering via LP-based Stabilities

scientific article published in January 2009

Comparison of Multi-resolution Analysis Patterns for Texture Classification of Breast Tumors Based on DCE-MRI

Compressed sensing based 3D tomographic reconstruction for rotational angiography

scientific article published on 01 January 2011

Compressed sensing dynamic reconstruction in rotational angiography

scientific article published on 01 January 2012

Compressed-sensing-based content-driven hierarchical reconstruction: Theory and application to C-arm cone-beam tomography.

scientific article published on September 2015

Concurrent tumor segmentation and registration with uncertainty-based sparse non-uniform graphs

scientific article

DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting

scientific article published on 17 July 2010

Deep Learning-Based Concurrent Brain Registration and Tumor Segmentation

scientific article published on 20 March 2020

Deep learning: definition and perspectives for thoracic imaging

scientific article published on 06 December 2019

Deep multi-instance learning using multi-modal data for diagnosis of lymphocytosis

scientific article published on 18 November 2020

Deformable group-wise registration using a physiological model: Application to diffusion-weighted MRI

Deformable medical image registration: a survey

scientific article published on 31 May 2013

Deformable medical image registration: setting the state of the art with discrete methods

scientific article published on August 2011

Deformable mosaicing for whole-body MRI

scientific article published on 01 January 2008

Demystification of AI-driven medical image interpretation: past, present and future

scientific article published on 13 August 2018

Dense image registration through MRFs and efficient linear programming

scientific article published on 7 April 2008

Dense registration with deformation priors

scientific article published in January 2009

Discrete symmetric image registration

Discriminative parameter estimation for random walks segmentation

scientific article published on 01 January 2013

Dosimetric Evaluation of Dose Calculation Uncertainties for MR-Only Approaches in Prostate MR-Guided Radiotherapy

scientific article published in 2022

Dosimetry-driven quality measure of brain pseudo Computed Tomography generated from deep learning for MRI-only radiotherapy treatment planning

scientific article published on 14 May 2020

Efficient and Automated Multimodal Satellite Data Registration through MRFs and Linear Programming

Efficient parallel message computation for MAP inference

scholarly article published November 2011

Elastic Registration-driven Deep Learning for Longitudinal Assessment of Systemic Sclerosis Interstitial Lung Disease at CT

scientific article published on 20 October 2020

EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation.

scientific article

Evaluation of registration methods on thoracic CT: the EMPIRE10 challenge

scientific article

Gradient vector flow fast geometric active contours

scientific article published in March 2004

Graph based spatial position mapping of low-grade gliomas

scientific article published on 01 January 2011

Graph-Based Geometric-Iconic Guide-Wire Tracking

scientific article published on 01 January 2011

Graph-Based Motion-Driven Segmentation of the Carotid Atherosclerotique Plaque in 2D Ultrasound Sequences

Graphical models and deformable diffeomorphic population registration using global and local metrics

Group-wise MDL based registration of small animals in video sequences

Guest Editors' Introduction: Special Section on Higher Order Graphical Models in Computer Vision

scientific article published on 01 July 2015

Guide-Wire Extraction through Perceptual Organization of Local Segments in Fluoroscopic Images

scientific article published on 01 January 2010

Hierarchical 3D diffusion wavelet shape priors

Higher-Order Graph Principles towards Non-Rigid Surface Registration

scientific article published on 11 February 2016

Image reconstruction using particle filters and multiple hypotheses testing

scientific article published in December 2009

Integrating edge/boundary priors with classification scores for building detection in very high resolution data

Inter and intra-modal deformable registration: continuous deformations meet efficient optimal linear programming.

scientific article published in January 2007

Joint model-pixel segmentation with pose-invariant deformable graph-priors

scientific article published on 01 January 2013

Joint tumor segmentation and dense deformable registration of brain MR images

scientific article published on 01 January 2012

Landmark/Image-based Deformable Registration of Gene Expression Data

scientific article

Learning deformation and structure simultaneously: in situ endograft deformation analysis

scientific article published in July 2010

Left ventricle segmentation using diffusion wavelets and boosting

Linear image registration through MRF optimization

Linear intensity-based image registration by Markov random fields and discrete optimization

scientific article published on 29 April 2010

Liver segmentation using sparse 3D prior models with optimal data support.

scientific article

Local atlas selection for discrete multi-atlas segmentation

MANIFOLD-CONSTRAINED EMBEDDINGS FOR THE DETECTION OF WHITE MATTER LESIONS IN BRAIN MRI.

scientific article published on December 2012

MRF energy minimization and beyond via dual decomposition

scientific article published in March 2011

Markov Random Field-based Fitting of a Subdivision-based Geometric Atlas

scientific article

Markov random field optimization for intensity-based 2D-3D registration

Model-Based 3D Hand Pose Estimation from Monocular Video

scientific article published on February 24, 2011

Model-Based Multi-view Fusion of Cinematic Flow and Optical Imaging

scientific article published on 01 January 2010

Modeling the structure of multivariate manifolds: Shape maps

Modular linear iconic matching using higher order graphs

Motion Analysis of Endovascular Stent-Grafts by MDL Based Registration

Needle tracking through higher-order MRF optimization

Non-rigid 2D-3D medical image registration using markov random fields

scientific article published on 01 January 2013

Nonlinear Embedding towards Articulated Spine Shape Inference Using Higher-Order MRFs

scientific article published on 01 January 2010

Optical flow estimation with uncertainties through dynamic MRFs

Parsing Facades with Shape Grammars and Reinforcement Learning

scientific article published on July 1, 2013

Particle filters, a quasi-Monte-Carlo-solution for segmentation of coronaries

scientific article published on 01 January 2005

Pose-Invariant 3D Proximal Femur Estimation through Bi-planar Image Segmentation with Hierarchical Higher-Order Graph-Based Priors

scientific article published on 01 January 2011

Postarthroplasty examination using X-ray images

scientific article

Preface

Primal/dual linear programming and statistical atlases for cartilage segmentation

scientific article published on 01 January 2007

Prior Knowledge, Random Walks and Human Skeletal Muscle Segmentation

scientific article published on 01 January 2012

Radiomics to predict outcomes and abscopal response of patients with cancer treated with immunotherapy combined with radiotherapy using a validated signature of CD8 cells

scientific article published on 01 November 2020

Registration with uncertainties and statistical modeling of shapes with variable metric kernels

scientific article published on January 2009

Reinventing Radiation Therapy with Machine Learning and Imaging Bio-markers (Radiomics): state-of-the-art, challenges and perspectives

scientific article published on 19 July 2020

Shape registration in implicit spaces using information theory and free form deformations

scientific article published in August 2006

Similarity-based appearance-prior for fitting a subdivision mesh in gene expression images

article

Simultaneous Cast Shadows, Illumination and Geometry Inference Using Hypergraphs

scientific article published on February 1, 2013

Simultaneous Geometric - Iconic Registration

Slice-to-volume deformable registration: efficient one-shot consensus between plane selection and in-plane deformation

scientific article published on 23 April 2015

Slice-to-volume medical image registration: A survey

scientific article published on 28 April 2017

Sparse Classification with MRI Based Markers for Neuromuscular Disease Categorization

Sparse and Locally Constant Gaussian Graphical Models

scientific article published in January 2009

Sparsity, redundancy and optimal image support towards knowledge-based segmentation

Spatio-temporal speckle reduction in ultrasound sequences

scientific article published on 01 January 2008

Spatiotemporal decomposition in object-space along reconstruction in emission tomography

scientific article published on 01 January 2008

Special issue on Optimization for vision, graphics and medical imaging: Theory and applications

scholarly article by Nikos Komodakis et al published December 2011 in Computer Vision and Image Understanding

Spine Segmentation in Medical Images Using Manifold Embeddings and Higher-Order MRFs

scientific article published on April 25, 2013

Standardization of brain MR images across machines and protocols: bridging the gap for MRI-based radiomics

scientific article published on 23 July 2020

Surface/volume-based articulated 3D spine inference through Markov random fields

scientific article published on 01 January 2009

Task-Specific Functional Brain Geometry from Model Maps

scientific article published on 01 January 2008

Use of Elastic Registration in Pulmonary MRI for the Assessment of Pulmonary Fibrosis in Patients with Systemic Sclerosis

scientific article published on 05 March 2019

Weakly Supervised Learning of Metric Aggregations for Deformable Image Registration

scientific article published on 10 September 2018