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List of works by Anthony J. Kusalik

A Multiplex RT-PCR Assay for the Simultaneous Identification of Neisseria gonorrhoeae and Its Ciprofloxacin Susceptibility Status

scientific article published on 16 August 2017

A Synthetic Kinome Microarray Data Generator

scientific article

A better sequence-read simulator program for metagenomics

scientific article

A systematic approach for analysis of peptide array kinome data

scientific article

Altered Toll-Like Receptor 9 Signaling in Mycobacterium avium subsp. paratuberculosis-Infected Bovine Monocytes Reveals Potential Therapeutic Targets ⬇️

scientific article published on October 31, 2012

Analysis and comparison of the pan-genomic properties of sixteen well-characterized bacterial genera

scientific article

Antimicrobial resistance genetic factor identification from whole-genome sequence data using deep feature selection

scientific article published on 24 December 2019

Bacterial peptides are intensively present throughout the human proteome

scientific article published on January 2010

BoLA class I allele diversity and polymorphism in a herd of cattle

scientific article published on 6 January 2007

Case study: using sequence homology to identify putative phosphorylation sites in an evolutionarily distant species (honeybee).

scientific article published on 6 November 2014

Characterization of the host response to pichinde virus infection in the Syrian golden hamster by species-specific kinome analysis

scientific article

Codon number shapes peptide redundancy in the universal proteome composition

article

Comparing the similarity of different groups of bacteria to the human proteome

scientific article

Complete genome sequence of the beer spoilage organism Pediococcus claussenii ATCC BAA-344T.

scientific article

Computational Analysis of the Predicted Evolutionary Conservation of Human Phosphorylation Sites

scientific article

Computational methods for predicting 3D genomic organization from high-resolution chromosome conformation capture data

scientific article published on 29 April 2020

Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights ⬇️

scientific article published on January 22, 2013

Computational prediction of eukaryotic phosphorylation sites ⬇️

scientific article published on September 16, 2011

Concordance between RNA-sequencing data and DNA microarray data in transcriptome analysis of proliferative and quiescent fibroblasts

scientific article

Correction: PIIKA 2: An Expanded, Web-Based Platform for Analysis of Kinome Microarray Data.

scientific article published on 2 January 2014

DAPPLE 2: a Tool for the Homology-Based Prediction of Post-Translational Modification Sites

scientific article published on July 2016

DAPPLE: a pipeline for the homology-based prediction of phosphorylation sites.

scientific article

Divergent immune responses to Mycobacterium avium subsp. paratuberculosis infection correlate with kinome responses at the site of intestinal infection

scientific article published on 28 May 2013

EPHB6 augments both development and drug sensitivity of triple-negative breast cancer tumours

scientific article published on 27 April 2018

Ebola virus modulates transforming growth factor β signaling and cellular markers of mesenchyme-like transition in hepatocytes

scientific article

Equivalent input produces different output in the UniFrac significance test

scientific article published on 13 August 2014

Evaluation of a Hydrogel-Based Diagnostic Approach for the Point-of-Care Based Detection of

scientific article published on 04 August 2018

From Beef to Bees: High-Throughput Kinome Analysis to Understand Host Responses of Livestock Species to Infectious Diseases and Industry-Associated Stress

scientific article published on 15 May 2020

Gen2Epi: an automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and molecular epidemiological data in Neisseria gonorrhoeae

scholarly article by Reema Singh et al published 4 March 2019 in BMC Genomics

Gen2EpiGUI: User-friendly Pipeline for Analyzing Whole Genome Sequencing Data for Epidemiological Studies of Neisseria gonorrhoeae

scientific article published on 02 June 2020

Genes responsive to rapamycin and serum deprivation are clustered on chromosomes and undergo reorganization within local chromatin environments

scientific article published on 03 September 2019

GrapHi-C: graph-based visualization of Hi-C datasets.

scientific article

Humanized yeast genetic interaction mapping predicts synthetic lethal interactions of FBXW7 in breast cancer

scientific article published on 27 July 2019

Identification of developmentally-specific kinotypes and mechanisms of Varroa mite resistance through whole-organism, kinome analysis of honeybee

scientific article

Induction of ligand-specific PrPCsignaling in human neuronal cells ⬇️

scientific article published on August 23, 2012

Induction of tissue- and stressor-specific kinomic responses in chickens exposed to hot and cold stresses

scientific article published on April 2015

Kinome Analysis of Honeybee (Apis mellifera L.) Dark-Eyed Pupae Identifies Biomarkers and Mechanisms of Tolerance to Varroa Mite Infestation

scientific article published on 07 February 2020

Kinome profiling of peripheral blood mononuclear cells collected prior to vaccination reveals biomarkers and potential mechanisms of vaccine unresponsiveness in pigs

scientific article published on 14 July 2020

Kinotypes: stable species- and individual-specific profiles of cellular kinase activity

scientific article

Mapping the human proteome for non-redundant peptide islands

scientific article

Massive peptide sharing between viral and human proteomes

scientific article published on 5 June 2008

Metformin induces the AP-1 transcription factor network in normal dermal fibroblasts

Mycobacterium avium subsp. paratuberculosis Inhibits Gamma Interferon-Induced Signaling in Bovine Monocytes: Insights into the Cellular Mechanisms of Johne's Disease ⬇️

scientific article published on June 11, 2012

NTD-DR: Nonnegative tensor decomposition for drug repositioning

scientific article published in 2022

Next-generation sequencing-guided identification and reconstruction of antibody CDR combinations from phage selection outputs

No human protein is exempt from bacterial motifs, not even one.

scientific article published on October 2010

PIIKA 2: an expanded, web-based platform for analysis of kinome microarray data

scientific article

Pentamers not found in the universal proteome can enhance antigen specific immune responses and adjuvant vaccines

scientific article

Peptide Arrays for Kinome Analysis of Livestock Species

scientific article published on 14 October 2014

Peptidology: short amino acid modules in cell biology and immunology.

scientific article published on 2 November 2006

Rapamycin reduces fibroblast proliferation without causing quiescence and induces STAT5A/B-mediated cytokine production

scientific article published on 10 December 2015

Rare peptide segments are found significantly more often in proto-oncoproteins than control proteins: implications for immunology and oncology

scientific article published on January 2009

Sequence uniqueness and sequence variability as modulating factors of human anti-HCV humoral immune response

scientific article published on 7 February 2008

Strength in numbers: achieving greater accuracy in MHC-I binding prediction by combining the results from multiple prediction tools

scientific article published on 24 March 2007

Sub-epitopic dissection of HCV E1315-328HRMAWDMMMNWSPT sequence by similarity analysis.

scientific article published on 26 April 2007

Systems Kinomics Demonstrates Congo Basin Monkeypox Virus Infection Selectively Modulates Host Cell Signaling Responses as Compared to West African Monkeypox Virus ⬇️

scientific article published on December 28, 2011

TFPI1 mediates resistance to doxorubicin in breast cancer cells by inducing a hypoxic-like response

scientific article (publication date: 2014)

Technological advances for interrogating the human kinome

scientific article published on February 2017

The oligodeoxynucleotide sequences corresponding to never-expressed peptide motifs are mainly located in the non-coding strand

scientific article

Transcriptome Analysis Identifies Plasmodiophora brassicae Secondary Infection Effector Candidates

scientific article published on 11 January 2020

Using crude whole-genome assemblies of Neisseria gonorrhoeae as a platform for strain analysis: clonal spread of gonorrhea infection in Saskatchewan, Canada

scientific article

Widespread and ample peptide overlapping between HCV and Homo sapiens proteomes

scientific article published on 8 April 2007

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