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List of works by Mattia Prosperi

A Single Early Introduction of HIV-1 Subtype B into Central America Accounts for Most Current Cases ⬇️

scientific article published on April 24, 2013

A computational approach to identify point mutations associated with occult hepatitis B: significant mutations affect coding regions but not regulative elements of HBV.

scientific article

A systematic review of the effectiveness of mobile apps for monitoring and management of mental health symptoms or disorders

article

A66 Multi-drug-resistant Klebsiella pneumoniae strains circulating in hospital setting: Whole-genome sequencing and Bayesian phylogenetic analysis for outbreak investigations.

scientific article

Acute liver failure: managing coagulopathy and the bleeding diathesis

scientific article published in May 2009

An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK.

scientific article

Analgesia and sedation for ventilated newborn infants of low dose remifentanyl infusion.

scientific article published in March 2002

Archived HIV-1 minority variants detected by ultra-deep pyrosequencing in provirus may be fully replication competent

scientific article published in November 2009

Are mutations in HIV type-1 reverse transcriptase 245 codon predictive of abacavir hypersensitivity reaction?

scientific article published in January 2009

Atazanavir (ATV) plasma concentrations at different times after drug uptake: associations with virologic response and hyperbilirubinemia

scholarly article by M Fabbiani et al published 2008 in Journal of the International AIDS Society

Big data hurdles in precision medicine and precision public health

article

Carbapenem-Resistant Klebsiella Pneumoniae Infections Early After Liver Transplantation: A Single-Center Experience

scientific article published on May 2017

Challenges in the analysis of viral metagenomes.

scientific article

Clinical and Epidemiologic Patterns of Chikungunya Virus Infection and Coincident Arboviral Disease in a School Cohort in Haiti, 2014-2015

scholarly article by Jacob D Ball et al published 31 August 2018 in Clinical Infectious Diseases

Clinical evaluation of Rega 8: an updated genotypic interpretation system that significantly predicts HIV-therapy response

scientific article

Clinical presentation, microbiological features and correlates of disease severity of 2009 pandemic influenza A (H1N1) infection.

scientific article

Combining epidemiological and genetic networks signifies the importance of early treatment in HIV-1 transmission

scientific article

Combining macula clinical signs and patient characteristics for age-related macular degeneration diagnosis: a machine learning approach

scientific article published on 27 January 2015

Comparison of HIV-1 genotypic resistance test interpretation systems in predicting virological outcomes over time

scientific article

Comparison of classifier fusion methods for predicting response to anti HIV-1 therapy

scientific article

Computable Eligibility Criteria through Ontology-driven Data Access: A Case Study of Hepatitis C Virus Trials.

scientific article published on 5 December 2018

Declining prevalence of HIV-1 drug resistance in treatment-failing patients: a clinical cohort study

scientific article published on January 2007

Determinants of survival in progressive multifocal leukoencephalopathy

scientific article

Development of a personalized diagnostic model for kidney stone disease tailored to acute care by integrating large clinical, demographics and laboratory data: the diagnostic acute care algorithm - kidney stones (DACA-KS)

article

ESICM LIVES 2016: part three

article

Effectiveness of antiretroviral regimens containing abacavir with tenofovir in treatment-experienced patients: predictors of virological response and drug resistance evolution in a multi-cohort study

scientific article published on 7 August 2009

Factors influencing the normalization of CD4+ T-cell count, percentage and CD4+/CD8+ T-cell ratio in HIV-infected patients on long-term suppressive antiretroviral therapy ⬇️

scientific article published on September 15, 2011

First results of MIPAS/ENVISAT with operational Level 2 code

article by B. Carli et al published January 2004 in Advances in Space Research

Flexible design of multiple metagenomics classification pipelines with UGENE

scientific article published on 25 October 2018

Genotypic resistance to lopinavir and fosamprenavir with or without ritonavir of clinical isolates from patients failing protease inhibitors-containing HAART regimens: prevalence and predictors

scientific article published in January 2007

Improved interpretation of genotypic changes in the HIV-1 reverse transcriptase coding region that determine the virological response to didanosine

scientific article published on 26 October 2007

Incidence and predictors of cardiovascular disease, chronic kidney disease, and diabetes in HIV/HCV-coinfected patients who achieved sustained virological response

scientific article published on 6 June 2016

Kin of coauthorship in five decades of health science literature

scientific article

Liver fibrosis progression and clinical outcomes are intertwined: role of CD4+ T-cell count and NRTI exposure from a large cohort of HIV/HCV-coinfected patients with detectable HCV-RNA: A MASTER cohort study

scientific article published on July 2016

Long-term follow-up of nevirapine-treated patients in a single-centre cohort.

scientific article published on 6 May 2009

Longitudinal analysis of intra-host simian immunodeficiency virus recombination in varied tissues of the rhesus macaque model for neuroAIDS.

scientific article published on 20 August 2013

Low‐Abundance Drug Resistance Mutations: Extending the HIV Paradigm to Hepatitis B Virus

article

Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations

scientific article published on 12 February 2009

Mid-dosing interval concentration of atazanavir and virological outcome in patients treated for HIV-1 infection

scientific article published in May 2010

Mining Twitter to Assess the Public Perception of the "Internet of Things"

scientific article

Molecular Epidemiology of Community-Associated Methicillin-resistant Staphylococcus aureus in the genomic era: a Cross-Sectional Study ⬇️

scientific article published on January 1, 2013

Moving microbiota research toward establishing causal associations that represent viable targets for effective public health interventions

scientific article published on 8 April 2016

Multi-drug resistant Klebsiella pneumoniae strains circulating in hospital setting: whole-genome sequencing and Bayesian phylogenetic analysis for outbreak investigations

scientific article published on 14 June 2017

Pharmacy refill adherence outperforms self-reported methods in predicting HIV therapy outcome in resource-limited settings

scientific article

Phylodynamic analysis of clinical and environmental Vibrio cholerae isolates from Haiti reveals diversification driven by positive selection

scientific article

Predicting human-immunodeficiency virus rebound after therapy initiation/switch using genetic, laboratory, and clinical data

Predicting response to antiretroviral treatment by machine learning: the EuResist project

scientific article published on 24 January 2012

Predictors of successful genotype-guided antiretroviral therapy in treatment-experienced individuals over calendar years: a cohort study

scientific article published on 21 August 2009

Reported Adverse Events with Painkillers: Data Mining of the US Food and Drug Administration Adverse Events Reporting System

scientific article

Resistance considerations in sequencing of antiretroviral therapy in low-middle income countries with currently available options

scientific article published on January 2010

Role of systemic inflammation scores for prediction of clinical outcomes in patients treated with atazanavir not boosted by ritonavir in the Italian MASTER cohort

scientific article published on 15 March 2017

Rules-based HIV-1 genotypic resistance interpretation systems predict 8 week and 24 week virological antiretroviral treatment outcome and benefit from drug potency weighting

article

Selecting anti-HIV therapies based on a variety of genomic and clinical factors

scientific article published on July 2008

Single tablet regimens are associated with reduced Efavirenz withdrawal in antiretroviral therapy naïve or switching for simplification HIV-infected patients

scientific article published on 13 January 2014

Single-tablet regimen is associated with reduced efavirenz withdrawal in antiretroviral naïve or switching for simplification HIV-infected patients

article

The EuResist expert model for customised HAART optimisation: 2010 update and extension to newest compounds.

scientific article published on 8 November 2010

The global burden of HIV-1 drug resistance in the past 20 years.

scientific article published on 25 May 2018

The global spread of Middle East respiratory syndrome: an analysis fusing traditional epidemiological tracing and molecular phylodynamics

scientific article published on 28 September 2016

Trends in Gene Expression Profiling for Prostate Cancer Risk Assessment: A Systematic Review

scientific article published on 17 May 2017

Two Distinct Hepatitis C Virus Genotype 1a Clades Have Different Geographical Distribution and Association With Natural Resistance to NS3 Protease Inhibitors

scientific article published on 31 March 2015

Use of efavirenz or atazanavir/ritonavir is associated with better clinical outcomes of HAART compared to other protease inhibitors: routine evidence from the Italian MASTER Cohort

scientific article

Use of massive parallel pyrosequencing for near full-length characterization of a unique HIV Type 1 BF recombinant associated with a fatal primary infection

scientific article published in September 2009

Using Social Media Data to Understand the Impact of Promotional Information on Laypeople's Discussions: A Case Study of Lynch Syndrome (Preprint)

scholarly article published 31 October 2017

Using String Metrics to Identify Patient Journeys through Care Pathways

scientific article published on 14 November 2014

Virological suppression reduces clinical progression in patients with multiclass-resistant HIV type 1.

scientific article published on March 2009

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