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List of works by Soha Hassoun

Architectural Retiming: A Technique for Optimizing Latency-constrained Circuits ⬇️

doctoral thesis by Soha Hassoun, Computer Science & Engineering, University of Washington, 1997

Artificial Intelligence for Biology

scientific article published on 27 August 2021

Biological Filtering and Substrate Promiscuity Prediction for Annotating Untargeted Metabolomics

scientific article published on 21 April 2020

Computational prediction of functional abortive RNA in E. coli

scientific article published on 24 March 2017

Discovery of substrate cycles in large scale metabolic networks using hierarchical modularity

scientific article published on 13 February 2015

Establishing synthesis pathway-host compatibility via enzyme solubility

scientific article published on 29 March 2019

Identification of biochemical network modules based on shortest retroactive distances

scientific article

Joint DAC/IWBDA special session engineering biology

Learning graph representations of biochemical networks and its application to enzymatic link prediction

scientific article published on 14 October 2020

Longitudinal Analysis of the Intestinal Microbiota in Persistently Stunted Young Children in South India

scientific article

MC3: a steady-state model and constraint consistency checker for biochemical networks

scientific article

Metabolic Flux-Based Modularity using Shortest Retroactive distances ⬇️

scientific article published on December 27, 2012

PROXIMAL: a method for Prediction of Xenobiotic Metabolism

scientific article

Pathway-Activity Likelihood Analysis and Metabolite Annotation for Untargeted Metabolomics Using Probabilistic Modeling

scientific article published on 03 May 2020

PreProPath: An Uncertainty-Aware Algorithm for Identifying Predictable Profitable Pathways in Biochemical Networks

scientific article published on November 2015

Probabilistic pathway construction ⬇️

scientific article published on February 1, 2011

Probabilistic strain optimization under constraint uncertainty ⬇️

scientific article published on March 29, 2013

Recent advances in mass spectrometry-based computational metabolomics

Selection Finder (SelFi): A computational metabolic engineering tool to enable directed evolution of enzymes

scientific article published in March 2017

Towards creating an extended metabolic model (EMM) for E. coli using enzyme promiscuity prediction and metabolomics data.

scientific article

Towards scaling elementary flux mode computation

scientific article published on 19 November 2019

gEFM: An Algorithm for Computing Elementary Flux Modes Using Graph Traversal

scientific article published in January 2016

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