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List of works by Masataka Tsuda

A genetic analysis system of Burkholderia cepacia: construction of mobilizable transposons and a cloning vector.

scientific article

A mutagenesis system utilizing a Tn1722 derivative containing an Escherichia coli-specific vector plasmid: application to Pseudomonas species.

scientific article published on December 1993

A positive regulatory gene,pvdS, for expression of pyoverdin biosynthetic genes inPseudomonas aeruginosa PAO ⬇️

scientific article published on July 22, 1995

A urease-negative mutant of Helicobacter pylori constructed by allelic exchange mutagenesis lacks the ability to colonize the nude mouse stomach.

scientific article published on August 1994

Analysis of Extracellular Alginate Lyase (alyA) Expression and its Regulatory Region in a Marine Bacterial Strain, Pseudoalteromonas atlantica AR06, Using a gfp Gene Reporter System ⬇️

scientific article published on November 20, 2012

Analysis of extracellular alginate lyase and its gene from a marine bacterial strain, Pseudoalteromonas atlantica AR06.

scientific article published on 21 October 2009

Bacterial clade with the ribosomal RNA operon on a small plasmid rather than the chromosome

scientific article

Biodegradation of γ-hexachlorocyclohexane by transgenic hairy root cultures of Cucurbita moschata that accumulate recombinant bacterial LinA.

scientific article published on 13 June 2016

Characterization of a class II defective transposon carrying two haloacetate dehalogenase genes from Delftia acidovorans plasmid pUO1

scientific article

Characterization of the MexC-MexD-OprJ Multidrug Efflux System in Δ mexA-mexB-oprM Mutants of Pseudomonas aeruginosa ⬇️

scientific article published on August 1, 1998

Characterization of the replication, maintenance, and transfer features of the IncP-7 plasmid pCAR1, which carries genes involved in carbazole and dioxin degradation.

scientific article

Cointegrate-resolution of toluene-catabolic transposon Tn4651: determination of crossover site and the segment required for full resolution activity.

scientific article published in August 2012

Comparison of the complete genome sequences of four γ-hexachlorocyclohexane-degrading bacterial strains: insights into the evolution of bacteria able to degrade a recalcitrant man-made pesticide.

scientific article published on 30 August 2016

Complete Genome Sequence of Bacillus licheniformis TAB7, a Compost-Deodorizing Strain with Potential for Plant Growth Promotion

article

Complete Genome Sequence of Bradyrhizobium diazoefficiens USDA 122, a Nitrogen-Fixing Soybean Symbiont.

scientific article published on 2 March 2017

Complete Genome Sequence of Methylobacterium sp. Strain AMS5, an Isolate from a Soybean Stem.

scientific article published on 17 March 2016

Complete Genome Sequence of Polypropylene Glycol- and Polyethylene Glycol-Degrading Sphingopyxis macrogoltabida Strain EY-1

scientific article

Complete Genome Sequence of Polyvinyl Alcohol-Degrading Strain Sphingopyxis sp. 113P3 (NBRC 111507)

scientific article

Complete Genome Sequence of Pseudomonas aeruginosa MTB-1, Isolated from a Microbial Community Enriched by the Technical Formulation of Hexachlorocyclohexane.

scientific article published on 23 January 2014

Complete Genome Sequence of Pseudomonas sp. Strain TKP, Isolated from a γ-Hexachlorocyclohexane-Degrading Mixed Culture.

scientific article published on 30 January 2014

Complete Genome Sequence of Ralstonia pickettii DTP0602, a 2,4,6-Trichlorophenol Degrader.

scientific article published on 31 October 2013

Complete Genome Sequence of Sphingopyxis macrogoltabida Strain 203N (NBRC 111659), a Polyethylene Glycol Degrader.

scientific article published on 09 June 2016

Complete Genome Sequence of Sphingopyxis macrogoltabida Type Strain NBRC 15033, Originally Isolated as a Polyethylene Glycol Degrader

scientific article

Complete Genome Sequence of Sphingopyxis terrae Strain 203-1 (NBRC 111660), a Polyethylene Glycol Degrader

scientific article published on 09 June 2016

Complete Genome Sequence of Thalassococcus sp. Strain S3, a Marine Roseobacter Clade Member Capable of Degrading Carbazole

scientific article published on 11 July 2019

Complete Genome Sequence of a Phenanthrene Degrader, Burkholderia sp. HB-1 (NBRC 110738)

scientific article

Complete Genome Sequence of a Phenanthrene Degrader, Mycobacterium sp. Strain EPa45 (NBRC 110737), Isolated from a Phenanthrene-Degrading Consortium

scientific article published on 16 July 2015

Complete Genome Sequence of a Polypropylene Glycol-Degrading Strain, Microbacterium sp. No. 7.

scientific article

Complete Genome Sequence of a γ-Hexachlorocyclohexane Degrader, Sphingobium sp. Strain TKS, Isolated from a γ-Hexachlorocyclohexane-Degrading Microbial Community.

scientific article

Complete Genome Sequence of a γ-Hexachlorocyclohexane-Degrading Bacterium, Sphingobium sp. Strain MI1205.

scientific article

Complete Genome Sequence of an Anaerobic Benzene-Degrading Bacterium, sp. Strain DN11

scientific article published on 14 March 2019

Complete Genome Sequence of the Marine Carbazole-Degrading Bacterium Erythrobacter sp. Strain KY5

scientific article published on 30 August 2018

Complete Genome Sequence of the Thermophilic Polychlorinated Biphenyl Degrader Geobacillus sp. Strain JF8 (NBRC 109937).

scientific article published on 23 January 2014

Complete Genome Sequence of the γ-Hexachlorocyclohexane-Degrading Bacterium Sphingomonas sp. Strain MM-1.

scientific article

Complete Nucleotide Sequence of TOL Plasmid pDK1 Provides Evidence for Evolutionary History of IncP-7 Catabolic Plasmids.

scientific article

Complete genome sequence of Acidovorax sp. strain KKS102, a polychlorinated-biphenyl degrader.

scientific article published on December 2012

Complete genome sequence of Burkholderia caribensis Bcrs1W (NBRC110739), a strain co-residing with phenanthrene degrader Mycobacterium sp. EPa45

scientific article published on 26 April 2016

Complete genome sequence of the representative γ-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26.

scientific article

Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation.

scientific article

Complete sequence determination combined with analysis of transposition/site-specific recombination events to explain genetic organization of IncP-7 TOL plasmid pWW53 and related mobile genetic elements.

scientific article published on 14 March 2007

Compounds that enhance the tailing activity of Moloney murine leukemia virus reverse transcriptase

scientific article

Conjugal transfer of polychlorinated biphenyl/biphenyl degradation genes in Acidovorax sp. strain KKS102, which are located on an integrative and conjugative element.

scientific article published on 8 June 2012

Conjugative Transfer of IncP-9 Catabolic Plasmids Requires a Previously Uncharacterized Gene, mpfK, Whose Homologs Are Conserved in Various MPFT-Type Plasmids

scientific article published on 27 November 2019

Construction of signature-tagged mutant library in Mesorhizobium loti as a powerful tool for functional genomics.

scientific article

Crystal Structure and Site-Directed Mutagenesis Analyses of Haloalkane Dehalogenase LinB from Sphingobium sp. Strain MI1205

scientific article

Crystallization and preliminary crystallographic analysis of a haloalkane dehalogenase, DbjA, from Bradyrhizobium japonicum USDA110

scientific article published on 12 March 2007

Degradation of beta-Hexachlorocyclohexane by Haloalkane Dehalogenase LinB from Sphingomonas paucimobilis UT26

scientific article

Design and experimental application of a novel non-degenerate universal primer set that amplifies prokaryotic 16S rRNA genes with a low possibility to amplify eukaryotic rRNA genes.

scientific article

Distribution and Organization of Auxotrophic Genes on the Multichromosomal Genome of Burkholderia multivorans ATCC 17616 ⬇️

scientific article published on June 1, 2003

Distribution of gamma-hexachlorocyclohexane-degrading genes on three replicons in Sphingobium japonicum UT26.

scientific article published in March 2006

Efficient N-tailing of blunt DNA ends by Moloney murine leukemia virus reverse transcriptase.

scientific article published on 2 February 2017

Essential role of Helicobacter pylori urease in gastric colonization: definite proof using a urease-negative mutant constructed by gene replacement.

scientific article published on December 1994

Essential role of urease in vitro and in vivo Helicobacter pylori colonization study using a wild-type and isogenic urease mutant strain

scientific article published on 01 January 1995

Establishment of plasmid vector and allelic exchange mutagenesis systems in a mycobacterial strain that is able to degrade polycyclic aromatic hydrocarbon.

scientific article published on 9 March 2018

Fiber-Optic-Based Biomonitoring of Benzene Derivatives by Recombinant E. coli Bearing Luciferase Gene-Fused TOL-Plasmid Immobilized on the Fiber-Optic End ⬇️

scientific article published on July 1, 1997

Functional analysis of unique class II insertion sequence IS1071.

scientific article published on January 2006

Functional replacement of OprJ by OprM in the MexCD-OprJ multidrug efflux system of Pseudomonas aeruginosa

scientific article published on 01 August 1998

Genetic analysis of a transposon carrying toluene degrading genes on a TOL plasmid pWW0.

scientific article

Genetic transformation in Helicobacter pylori

scientific article published on 01 January 1993

Genomic organization and genomic structural rearrangements of Sphingobium japonicum UT26, an archetypal γ-hexachlorocyclohexane-degrading bacterium.

scientific article published on 7 November 2011

Growth inhibition by metabolites of gamma-hexachlorocyclohexane in Sphingobium japonicum UT26.

scientific article published in April 2006

Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis

scientific article

High frequency mobilization of the chromosome of Escherichia coli by a mutant of plasmid RP4 temperature-sensitive for maintenance.

scientific article published in January 1980

Host Range of the Conjugative Transfer System of IncP-9 Naphthalene-Catabolic Plasmid NAH7 and Characterization of Its oriT Region and Relaxase

scientific article published on 14 October 2016

Identification and characterization of Tn4653, a transposon covering the toluene transposon Tn4651 on TOL plasmid pWW0

scientific article published on 01 July 1988

Identification and characterization of Tn4656, a novel class II transposon carrying a set of toluene-degrading genes from TOL plasmid pWW53.

scientific article

Identification and characterization of a new plasmid carrying genes for degradation of 2,4-dichlorophenoxyacetate from Pseudomonas cepacia CSV90.

scientific article

Identification and characterization of genes encoding a putative ABC-type transporter essential for utilization of gamma-hexachlorocyclohexane in Sphingobium japonicum UT26.

scientific article published on 16 March 2007

Identification and characterization of genes involved in the downstream degradation pathway of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis UT26. ⬇️

scientific article

Identification of Burkholderia multivorans ATCC 17616 genes induced in soil environment by in vivo expression technology.

scientific article

Identification of Burkholderia multivorans ATCC 17616 genetic determinants for fitness in soil by using signature-tagged mutagenesis

scientific article published on 14 February 2014

Identification of a response regulator gene for catabolite control from a PCB-degrading beta-proteobacteria, Acidovorax sp. KKS102

scientific article published on 01 June 2006

Identification of insertion sequence from a gamma-hexachlorocyclohexane degrading bacterium, Sphingomonas paucimobilis UT26.

scientific article published in January 2005

Iron-Mediated regulation of alkaline proteinase production in Pseudomonas aeruginosa

scientific article published on 01 January 2001

Isolation and characterization of naphthalene-catabolic genes and plasmids from oil-contaminated soil by using two cultivation-independent approaches.

scientific article

Isolation of oxygenase genes for indigo-forming activity from an artificially polluted soil metagenome by functional screening using Pseudomonas putida strains as hosts.

scientific article published on 10 January 2015

Lessons from the genomes of lindane-degrading sphingomonads

scientific article published on 21 May 2019

Metabolic pathway, genes, and enzymes for the degradation of chlorinated pesticide, gamma-hexachlorocyclohexane

scientific article published in October 2005

Modification of activity and specificity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 by engineering of its entrance tunnel.

scientific article published on 2 October 2003

Nucleotide Sequence and Characterization of cdrA, a Cell Division-Related Gene of Helicobacter pylori.

scientific article published in August 1999

Optimization of single strand DNA incorporation reaction by Moloney murine leukaemia virus reverse transcriptase

scientific article published on 01 October 2018

ParI, an orphan ParA family protein from Pseudomonas putida KT2440-specific genomic island, interferes with the partition system of IncP-7 plasmids

scientific article published on 28 August 2012

Pivotal role of anthranilate dioxygenase genes in the adaptation of Burkholderia multivorans ATCC 17616 in soil

scientific article published on 12 March 2012

Properties and biotechnological applications of natural and engineered haloalkane dehalogenases

scientific article published on 16 September 2015

Recipient range of IncP-7 conjugative plasmid pCAR2 from Pseudomonas putida HS01 is broader than from other Pseudomonas strains.

scientific article published in December 2005

Reconstruction of mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB

scientific journal article

Redesigning dehalogenase access tunnels as a strategy for degrading an anthropogenic substrate

scientific article

Region-specific insertion of transposons in combination with selection for high plasmid transferability and stability accounts for the structural similarity of IncP-1 plasmids

scientific article published on 2 February 2007

Site-specific recombination system encoded by toluene catabolic transposon Tn4651

scientific article

Stepwise enhancement of catalytic performance of haloalkane dehalogenase LinB towards β-hexachlorocyclohexane.

scientific article

Structure of Haloacetate-Catabolic IncP-1β Plasmid pUO1 and Genetic Mobility of Its Residing Haloacetate-Catabolic Transposon ⬇️

scientific article published on November 1, 2003

Suppression of pleiotropic phenotypes of a Burkholderia multivorans fur mutant by oxyR mutation

scientific article published on 23 February 2012

Suppression of substrate inhibition in phenanthrene-degrading Mycobacterium by co-cultivation with a non-degrading Burkholderia strain

scientific article published on 17 April 2019

The Small Protein HemP Is a Transcriptional Activator for the Hemin Uptake Operon in Burkholderia multivorans ATCC 17616.

scientific article published on 16 June 2017

The identification of catalytic pentad in the haloalkane dehalogenase DhmA from Mycobacterium avium N85: reaction mechanism and molecular evolution

scientific article published on 28 September 2006

The lin Genes for γ-Hexachlorocyclohexane Degradation in Sphingomonas sp. MM-1 Proved to Be Dispersed across Multiple Plasmids ⬇️

scientific article published on March 7, 2011

The thiJ locus and its relation to phosphorylation of hydroxymethylpyrimidine in Escherichia coli

scientific article published on 01 October 1996

Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance

scientific article

Tn1 insertion mutagenesis in Escherichia coli K-12 using a temperature-sensitive mutant of plasmid RP4

scientific article published on 01 January 1981

Tn501 insertion mutagenesis in Pseudomonas aeruginosa PAO

scientific article published on 01 January 1984

Use of a transposon-encoded site-specific resolution system for construction of large and defined deletion mutations in bacterial chromosome.

scientific article

[Functional evolution of bacteria in degradation of environmental pollutants]

scientific article published on 01 October 2005

[Mobile genetic elements for microbial degradation of environmental pollutants]

scientific article published on 01 October 2005

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