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List of works by Christos Ouzounis

A database of protein structure families with common folding motifs ⬇️

scientific article published on December 1, 1992

A minimal estimate for the gene content of the last universal common ancestor--exobiology from a terrestrial perspective

scientific article

A path towards SARS-CoV-2 attenuation: metabolic pressure on CTP synthesis rules the virus evolution

scientific article published on 30 October 2020

A recent origin of Orf3a from M protein across the coronavirus lineage arising by sharp divergence

scientific article published on 04 December 2020

A systems model for immune cell interactions unravels the mechanism of inflammation in human skin

scientific article

An Exponential Core in the Heart of the Yeast Protein Interaction Network

scientific article published on 20 October 2004

An intrinsically disordered proteins community for ELIXIR

scientific article published on 15 October 2019

An updated metabolic view of the Bacillus subtilis 168 genome

scientific article published on 21 February 2013

Ancestral state reconstruction of metabolic pathways across pangenome ensembles

scientific article published on 14 September 2020

Ancestral state reconstructions for genomes

scientific article

Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association

scientific article published in 2022

Annotation inconsistencies beyond sequence similarity-based function prediction - phylogeny and genome structure.

scientific article

Are binding residues conserved? ⬇️

scientific article published on January 1, 1998

Are splicing mutations the most frequent cause of hereditary disease?

scientific article

Assessing proteinase K resistance of fish prion proteins in a scrapie-infected mouse neuroblastoma cell line

scientific article

Atypical Divergence of SARS-CoV-2 Orf8 from Orf7a within the Coronavirus Lineage Suggests Potential Stealthy Viral Strategies in Immune Evasion

scientific article

Automated metabolic reconstruction for Methanococcus jannaschii

scientific article published on October 2004

Bacterial sigma 70 transcription factor DNA-binding domains in the archaeon Methanococcus jannaschii

scientific article published on 01 December 1997

Beyond 100 genomes

scientific article

BioLayout(Java): versatile network visualisation of structural and functional relationships

scientific article published in January 2005

BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution

scientific article published on May 2017

BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery

scientific article published on 6 August 2014

BioTextQuest+: a knowledge integration platform for literature mining and concept discovery

scientific article published on 11 February 2015

BioTextQuest: a web-based biomedical text mining suite for concept discovery

scientific article published on 12 October 2011

Bioinformatics and the theoretical foundations of molecular biology

scientific article published on 01 March 2002

Biological information extraction and co-occurrence analysis

scientific article published on January 2014

Brain Radiation Information Data Exchange (BRIDE): integration of experimental data from low-dose ionising radiation research for pathway discovery

scientific article

CORRIE: enzyme sequence annotation with confidence estimates.

scientific article

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics

scientific article

Classification schemes for protein structure and function.

scientific article

Clustering the annotation space of proteins

scientific article

CoGenT++: an extensive and extensible data environment for computational genomics

scientific article

Comparative genomics of transcriptional control in the human malaria parasite Plasmodium falciparum

scientific article published on 15 July 2004

Comparison of sequence masking algorithms and the detection of biased protein sequence regions.

scientific article

Complete genome sequence of Arthrobacter phenanthrenivorans type strain (Sphe3) ⬇️

scientific article

Complete genome sequence of Mycobacterium sp. strain (Spyr1) and reclassification to Mycobacterium gilvum Spyr1.

scientific article published on October 2011

Computational complexity of algorithms for sequence comparison, short-read assembly and genome alignment.

scientific article published on 06 April 2017

Computational disease gene identification: a concert of methods prioritizes type 2 diabetes and obesity candidate genes.

scientific article

Consent insufficient for data release-Response

scientific article published on 01 May 2019

Copy number and loss of heterozygosity detected by SNP array of formalin-fixed tissues using whole-genome amplification

scientific article

Denoising inferred functional association networks obtained by gene fusion analysis

scientific article

Detection of functional modules from protein interaction networks.

scientific article published in January 2004

Detection of genomic idiosyncrasies using fuzzy phylogenetic profiles

scientific article

Developing computational biology at meridian 23° E, and a little eastwards

DisProt: intrinsic protein disorder annotation in 2020

scientific article published on 01 January 2020

Disentangling the complexity of low complexity proteins

scientific article published on 30 January 2019

EUCLID: automatic classification of proteins in functional classes by their database annotations ⬇️

scientific article published on January 1, 1998

Early bioinformatics: the birth of a discipline--a personal view

scientific article

Emergence, development and diversification of the TGF-beta signalling pathway within the animal kingdom

scientific article

Establishment of computational biology in Greece and Cyprus: Past, present, and future

scientific article published on 19 December 2019

Evaluation of annotation strategies using an entire genome sequence

scientific article

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

scientific article

Experimental evidence validating the computational inference of functional associations from gene fusion events: a critical survey.

scientific article published on 05 December 2012

From genes to genomes: universal scale-invariant properties of microbial chromosome organisation.

scientific article published in September 2003

From genome sequences to protein function

Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks

scientific article

Functional evolution of the yeast protein interaction network

scientific article published on 7 April 2004

Functional genomics evidence unearths new moonlighting roles of outer ring coat nucleoporins

scientific article published on 11 April 2014

Gene network and proteomic analyses of cardiac responses to pathological and physiological stress.

scientific article

GeneTRACE-reconstruction of gene content of ancestral species

scientific article published on 01 July 2003

Genetic variation between Helicobacter pylori strains: gene acquisition or loss?

scientific article published in October 2002

Genome coverage, literally speaking. The challenge of annotating 200 genomes with 4 million publications

scientific article

Genome evolution reveals biochemical networks and functional modules

scientific article

Genome-wide detection and family clustering of ion channels

scientific article published in March 2002

Genome-wide expression patterns in physiological cardiac hypertrophy

scientific article

Genome-wide identification of genes likely to be involved in human genetic disease

scientific article

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains

scientific article published in August 2014

H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa.

scientific article

Highly consistent patterns for inherited human diseases at the molecular level

scientific article published on 15 November 2005

HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks

scientific article published on 5 January 2018

Hypothesis, analysis and synthesis, it's all Greek to me

scientific article published on 20 February 2019

Inference of Pathway Decomposition Across Multiple Species Through Gene Clustering

article

Lineage-specific partitions in archaeal transcription

scientific article published on May 2007

MagicMatch--cross-referencing sequence identifiers across databases

scientific article published on 16 June 2005

Mapping functional associations in the entire genome of Drosophila melanogaster using fusion analysis

scientific article

Maps, books and other metaphors for systems biology

scientific article

Marcus Leonardo Boyd

scientific article published on 26 May 2021

Measuring genome conservation across taxa: divided strains and united kingdoms

scientific article

Meeting report: the seventh conference of the hellenic society for computational biology and bioinformatics.

scientific article published on 16 June 2013

Metabolic database systems for the analysis of genome-wide function

scientific article published on December 2003

Metabolic innovations towards the human lineage

scientific article published on 9 September 2008

Modeling the percolation of annotation errors in a database of protein sequences

scientific article published on 01 December 2002

Multi-genome Core Pathway Identification through Gene Clustering

Myriads of protein families, and still counting

scientific article published in 2003

No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects.

scientific article published on 28 May 2018

Percolation of annotation errors through hierarchically structured protein sequence databases

scientific article published on 01 February 2005

Probabilistic annotation of protein sequences based on functional classifications.

scientific article

Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species

scientific article

Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins

scientific article

Protein families and TRIBES in genome sequence space

scientific article

PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1

scientific article published on 01 August 2003

Reverse Interpretation: A Hypothetical Selection Mechanism for Adaptive Mutagenesis Based on Autoregulated mRNA Stability

Rise and demise of bioinformatics? Promise and progress

scientific article

Robustness of metabolic map reconstruction

scientific article published on 01 September 2004

Science communication media for scientists and the public

scientific article published on October 2007

Sensitive detection of sequence similarity using combinatorial pattern discovery: a challenging study of two distantly related protein families

scientific article published in December 2005

Sequence analysis of the Methanococcus jannaschii genome and the prediction of protein function ⬇️

scientific article published on 01 August 1997

Sequence evidence for common ancestry of eukaryotic endomembrane coatomers

scientific article

Sequence-based feature prediction and annotation of proteins

scientific article (publication date: 2009)

Stereotyped patterns of somatic hypermutation in subsets of patients with chronic lymphocytic leukemia: implications for the role of antigen selection in leukemogenesis

scientific article published on 24 October 2007

Stratification of co-evolving genomic groups using ranked phylogenetic profiles

scientific article

Structural and functional properties of genes involved in human cancer

scientific article

Taxonomic identification of mediterranean pines and their hybrids based on the high resolution melting (HRM) and trnL approaches: from cytoplasmic inheritance to timber tracing

scientific article (publication date: 2013)

The Coming of Age for Big Data in Systems Radiobiology, an Engineering Perspective

scientific article published on 29 September 2020

The balance of driving forces during genome evolution in prokaryotes

scientific article (publication date: July 2003)

The bioinformatics wealth of nations

scientific article published on 04 March 2020

The chlamydiales pangenome revisited: structural stability and functional coherence

scientific article published on 16 May 2012

The comparative genomics of protein interactions.

scientific article published on January 2007

The net of life: reconstructing the microbial phylogenetic network

scientific article

The past, present and future of genome-wide re-annotation

scientific article

The phylogenetic diversity of eukaryotic transcription

scientific article

The phylogenetic extent of metabolic enzymes and pathways

scientific article published on March 2003

The properties of protein family space depend on experimental design

scientific article

Toward unrestricted use of public genomic data:

scientific article

Transcription regulation and environmental adaptation in bacteria

scientific article published on 01 June 2003

Transcriptome classification reveals molecular subtypes in psoriasis

scientific article

Travelling to scientific meetings is a mission, not a vacation

scientific article published on 26 March 2020

Tumorigenic properties of iron regulatory protein 2 (IRP2) mediated by its specific 73-amino acids insert

scientific article

What's in a genome?

scientific article published in Nature

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