List of works - Han De Winde

A new physiological role for Pdr12p in Saccharomyces cerevisiae: export of aromatic and branched-chain organic acids produced in amino acid catabolism.

scientific article published on September 2006

A novel regulator of G protein signalling in yeast, Rgs2, downregulates glucose-activation of the cAMP pathway through direct inhibition of Gpa2.

scientific article

An ARS/silencer binding factor also activates two ribosomal protein genes in yeast.

scientific article published on July 1989

C(1) compounds as auxiliary substrate for engineered Pseudomonas putida S12.

scientific article published on 12 March 2009

Carbonic anhydrase (Nce103p): an essential biosynthetic enzyme for growth of Saccharomyces cerevisiae at atmospheric carbon dioxide pressure.

scientific article

Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures.

scientific article published on 26 September 2011

Chemostat-based micro-array analysis in baker's yeast.

scientific article published on January 2009

Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data.

scientific article

Complete genome sequence of solvent-tolerant Pseudomonas putida S12 including megaplasmid pTTS12.

scientific article published on 3 March 2015

Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures.

scientific article

Crude glycerol as feedstock for the sustainable production of p-hydroxybenzoate by Pseudomonas putida S12.

scientific article

Differential requirement of the yeast sugar kinases for sugar sensing in establishing the catabolite-repressed state.

scientific article

During the initiation of fermentation overexpression of hexokinase PII in yeast transiently causes a similar deregulation of glycolysis as deletion of Tps1

scientific article published on 01 February 1998

Dynamic Response of Pseudomonas putida S12 to Sudden Addition of Toluene and the Potential Role of the Solvent Tolerance Gene trgI

scientific article published on 16 July 2015

Efficient whole-cell biotransformation of 5-(hydroxymethyl)furfural into FDCA, 2,5-furandicarboxylic acid.

scientific article published on 3 April 2010

Energetic limits to metabolic flexibility: responses of Saccharomyces cerevisiae to glucose-galactose transitions.

scientific article

Energy biotechnology in 2013: advanced technology development for breakthroughs in fuels and chemicals production

scientific article published on 19 May 2013

Engineering Pseudomonas putida S12 for efficient utilization of D-xylose and L-arabinose

scientific article (publication date: August 2008)

Establishment of oxidative D-xylose metabolism in Pseudomonas putida S12.

scientific article published on 6 March 2009

Extreme calorie restriction and energy source starvation in Saccharomyces cerevisiae represent distinct physiological states

scientific article published on 22 July 2011

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

scientific article

Global Regulation of Mitochondrial Biogenesis inSaccharomyces cerevisiae: ABF1 and CPF1 Play Opposite Roles in Regulating Expression of theQCR8Gene, Which Encodes Subunit VIII of the Mitochondrial Ubiquinol-CytochromecOxidoreductase ⬇️

scientific article published on June 1, 1992

Global regulation of mitochondrial biogenesis in Saccharomyces cerevisiae.

scientific article

Glucose-induced cAMP signalling in yeast requires both a G-protein coupled receptor system for extracellular glucose detection and a separable hexose kinase-dependent sensing process

scientific article published on 01 October 2000

Hxt-carrier-mediated glucose efflux upon exposure of Saccharomyces cerevisiae to excess maltose.

scientific article published on September 2002

Identification of a quinone dehydrogenase from a Bacillus sp. involved in the decolourization of the lignin-model dye, Azure B.

scientific article published on 27 April 2012

Identification of genes with nutrient-controlled expression by PCR-mapping in the yeast Saccharomyces cerevisiae

scientific article published on 01 August 1997

Improved p-hydroxybenzoate production by engineered Pseudomonas putida S12 by using a mixed-substrate feeding strategy.

scientific article

Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains

scientific article published in Nature Communications

Involvement of distinct G-proteins, Gpa2 and Ras, in glucose- and intracellular acidification-induced cAMP signalling in the yeast Saccharomyces cerevisiae.

scientific article

Isolation and characterization of Cupriavidus basilensis HMF14 for biological removal of inhibitors from lignocellulosic hydrolysate.

scientific article published on 15 December 2009

Isolation and characterization of novel bacterial strains exhibiting ligninolytic potential

scientific article (publication date: 13 October 2011)

Isolation and genetic characterization of an improved benzene-tolerant mutant of Pseudomonas putida S12.

scientific article published in June 2010

Metabolic and regulatory rearrangements underlying efficient D-xylose utilization in engineered Pseudomonas putida S12.

scientific article published on 13 March 2012

Metabolic flux analysis of a phenol producing mutant of Pseudomonas putida S12: verification and complementation of hypotheses derived from transcriptomics.

scientific article published on 26 June 2009

Microbial degradation of furanic compounds: biochemistry, genetics, and impact

scientific article

New insights into the Saccharomyces cerevisiae fermentation switch: dynamic transcriptional response to anaerobicity and glucose-excess.

scientific article

Novel alleles of yeast hexokinase PII with distinct effects on catalytic activity and catabolite repression of SUC2

scientific article published on 01 March 1999

Nutrient-induced signal transduction through the protein kinase A pathway and its role in the control of metabolism, stress resistance, and growth in yeast.

scientific article

Peroxicretion: a novel secretion pathway in the eukaryotic cell.

scientific article

Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations.

scientific article

Physiological characterization and fed-batch production of an extracellular maltase of Schizosaccharomyces pombe CBS 356

scientific article published on 01 September 2006

Redundancy in putrescine catabolism in solvent tolerant Pseudomonas putida S12

scientific article published on 22 April 2011

Regulation of genes encoding subunits of the trehalose synthase complex in Saccharomyces cerevisiae: novel variations of STRE-mediated transcription control?

scientific article published on 01 September 1996

Regulation of mitochondrial biogenesis in Saccharomyces cerevisiae. Intricate interplay between general and specific transcription factors in the promoter of the QCR8 gene.

scientific article published on October 1995

Regulation of solvent tolerance in Pseudomonas putida S12 mediated by mobile elements.

scientific article published on 11 April 2017

Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study.

scientific article published on January 2008

Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.

scientific article published on 20 November 2003

Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis.

scientific article

Solvent Tolerance in Bacteria: Fulfilling the Promise of the Biotech Era?

scientific article published on 16 May 2018

The 22nd International Specialized Symposium on Yeasts (ISSY 2002) 'yeast fermentations and other yeast bioprocesses'.

scientific article published in August 2002

The Sch9 protein kinase in the yeast Saccharomyces cerevisiae controls cAPK activity and is required for nitrogen activation of the fermentable-growth-medium-induced (FGM) pathway ⬇️

scientific article published on August 1, 1997

The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.

scientific article published on 31 October 2002

The multifunctional regulatory proteins ABF1 and CPF1 are involved in the formation of a nuclease-hypersensitive region in the promoter of the QCR8 gene

scientific article published on 01 August 1993

The role of hexose transport and phosphorylation in cAMP signalling in the yeast Saccharomyces cerevisiae.

scientific article published in April 2001

Transcriptional responses ofSaccharomyces cerevisiaeto preferred and nonpreferred nitrogen sources in glucose-limited chemostat cultures

article

TrgI, toluene repressed gene I, a novel gene involved in toluene-tolerance in Pseudomonas putida S12.

scientific article published on 17 December 2008

Two-dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae.

scientific article published on 20 October 2004

List of works by Han De Winde

A new physiological role for Pdr12p in Saccharomyces cerevisiae: export of aromatic and branched-chain organic acids produced in amino acid catabolism.

A novel regulator of G protein signalling in yeast, Rgs2, downregulates glucose-activation of the cAMP pathway through direct inhibition of Gpa2.

An ARS/silencer binding factor also activates two ribosomal protein genes in yeast.

C(1) compounds as auxiliary substrate for engineered Pseudomonas putida S12.

Carbonic anhydrase (Nce103p): an essential biosynthetic enzyme for growth of Saccharomyces cerevisiae at atmospheric carbon dioxide pressure.

Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures.

Chemostat-based micro-array analysis in baker's yeast.

Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: a quantitative analysis of a compendium of chemostat-based transcriptome data.

Complete genome sequence of solvent-tolerant Pseudomonas putida S12 including megaplasmid pTTS12.

Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures.

Crude glycerol as feedstock for the sustainable production of p-hydroxybenzoate by Pseudomonas putida S12.

Differential requirement of the yeast sugar kinases for sugar sensing in establishing the catabolite-repressed state.

During the initiation of fermentation overexpression of hexokinase PII in yeast transiently causes a similar deregulation of glycolysis as deletion of Tps1

Dynamic Response of Pseudomonas putida S12 to Sudden Addition of Toluene and the Potential Role of the Solvent Tolerance Gene trgI

Efficient whole-cell biotransformation of 5-(hydroxymethyl)furfural into FDCA, 2,5-furandicarboxylic acid.

Energetic limits to metabolic flexibility: responses of Saccharomyces cerevisiae to glucose-galactose transitions.

Energy biotechnology in 2013: advanced technology development for breakthroughs in fuels and chemicals production

Engineering Pseudomonas putida S12 for efficient utilization of D-xylose and L-arabinose

Establishment of oxidative D-xylose metabolism in Pseudomonas putida S12.

Extreme calorie restriction and energy source starvation in Saccharomyces cerevisiae represent distinct physiological states

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Global Regulation of Mitochondrial Biogenesis inSaccharomyces cerevisiae: ABF1 and CPF1 Play Opposite Roles in Regulating Expression of theQCR8Gene, Which Encodes Subunit VIII of the Mitochondrial Ubiquinol-CytochromecOxidoreductase ⬇️

Global regulation of mitochondrial biogenesis in Saccharomyces cerevisiae.

Glucose-induced cAMP signalling in yeast requires both a G-protein coupled receptor system for extracellular glucose detection and a separable hexose kinase-dependent sensing process

Hxt-carrier-mediated glucose efflux upon exposure of Saccharomyces cerevisiae to excess maltose.

Identification of a quinone dehydrogenase from a Bacillus sp. involved in the decolourization of the lignin-model dye, Azure B.

Identification of genes with nutrient-controlled expression by PCR-mapping in the yeast Saccharomyces cerevisiae

Improved p-hydroxybenzoate production by engineered Pseudomonas putida S12 by using a mixed-substrate feeding strategy.

Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains

Involvement of distinct G-proteins, Gpa2 and Ras, in glucose- and intracellular acidification-induced cAMP signalling in the yeast Saccharomyces cerevisiae.

Isolation and characterization of Cupriavidus basilensis HMF14 for biological removal of inhibitors from lignocellulosic hydrolysate.

Isolation and characterization of novel bacterial strains exhibiting ligninolytic potential

Isolation and genetic characterization of an improved benzene-tolerant mutant of Pseudomonas putida S12.

Metabolic and regulatory rearrangements underlying efficient D-xylose utilization in engineered Pseudomonas putida S12.

Metabolic flux analysis of a phenol producing mutant of Pseudomonas putida S12: verification and complementation of hypotheses derived from transcriptomics.

Microbial degradation of furanic compounds: biochemistry, genetics, and impact

New insights into the Saccharomyces cerevisiae fermentation switch: dynamic transcriptional response to anaerobicity and glucose-excess.

Novel alleles of yeast hexokinase PII with distinct effects on catalytic activity and catabolite repression of SUC2

Nutrient-induced signal transduction through the protein kinase A pathway and its role in the control of metabolism, stress resistance, and growth in yeast.

Peroxicretion: a novel secretion pathway in the eukaryotic cell.

Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations.

Physiological characterization and fed-batch production of an extracellular maltase of Schizosaccharomyces pombe CBS 356

Redundancy in putrescine catabolism in solvent tolerant Pseudomonas putida S12

Regulation of genes encoding subunits of the trehalose synthase complex in Saccharomyces cerevisiae: novel variations of STRE-mediated transcription control?

Regulation of mitochondrial biogenesis in Saccharomyces cerevisiae. Intricate interplay between general and specific transcription factors in the promoter of the QCR8 gene.

Regulation of solvent tolerance in Pseudomonas putida S12 mediated by mobile elements.

Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study.

Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study.

Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis.

Solvent Tolerance in Bacteria: Fulfilling the Promise of the Biotech Era?

The 22nd International Specialized Symposium on Yeasts (ISSY 2002) 'yeast fermentations and other yeast bioprocesses'.

The Sch9 protein kinase in the yeast Saccharomyces cerevisiae controls cAPK activity and is required for nitrogen activation of the fermentable-growth-medium-induced (FGM) pathway ⬇️

The genome-wide transcriptional responses of Saccharomyces cerevisiae grown on glucose in aerobic chemostat cultures limited for carbon, nitrogen, phosphorus, or sulfur.

The multifunctional regulatory proteins ABF1 and CPF1 are involved in the formation of a nuclease-hypersensitive region in the promoter of the QCR8 gene

The role of hexose transport and phosphorylation in cAMP signalling in the yeast Saccharomyces cerevisiae.

Transcriptional responses ofSaccharomyces cerevisiaeto preferred and nonpreferred nitrogen sources in glucose-limited chemostat cultures

TrgI, toluene repressed gene I, a novel gene involved in toluene-tolerance in Pseudomonas putida S12.

Two-dimensional transcriptome analysis in chemostat cultures. Combinatorial effects of oxygen availability and macronutrient limitation in Saccharomyces cerevisiae.