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List of works by John Y. Takekawa

2010 bathymetric survey and digital elevation model of Corte Madera Bay, California

article published in 2011

A century of landscape disturbance and urbanization of the San Francisco Bay region affects the present-day genetic diversity of the California Ridgway’s rail (Rallus obsoletus obsoletus)

A network approach to prioritize conservation efforts for migratory birds

scientific article published on 16 August 2019

A new method for discovering behavior patterns among animal movements

scientific article published on 29 September 2015

ANIMAL MIGRATION AND RISK OF SPREAD OF VIRAL INFECTIONS

scientific article published on 18 October 2013

Age‐ and sex‐related dietary specialization facilitate seasonal resource partitioning in a migratory shorebird

scientific article published in 2021

Avian Influenza Spread and Transmission Dynamics

scientific article published on 30 January 2015

Avian influenza H5N1 viral and bird migration networks in Asia

scientific article

Balanced Sediment Fluxes in Southern California’s Mediterranean-Climate Zone Salt Marshes

scholarly article by Jordan A. Rosencranz et al published 1 December 2015 in Estuaries and Coasts

Bird Migration and Avian Influenza: A Comparison of Hydrogen Stable Isotopes and Satellite Tracking Methods

scientific article

Changes in habitat availability for outmigrating juvenile salmon (Oncorhynchusspp.) following estuary restoration

scientific article published in 2016

Characterizing the interface between wild ducks and poultry to evaluate the potential of transmission of avian pathogens

scientific article published on 15 November 2011

Chewing Lice of Swan Geese (Anser cygnoides): New Host-Parasite Associations

scientific article (publication date: October 2016)

Collaborative decision-analytic framework to maximize resilience of tidal marshes to climate change

scholarly article by Karen M. Thorne et al published 2015 in Ecology and Society

Correction for Tian et al., Avian influenza H5N1 viral and bird migration networks in Asia

scientific article published on 11 May 2015

Could Changes in the Agricultural Landscape of Northeastern China Have Influenced the Long-Distance Transmission of Highly Pathogenic Avian Influenza H5Nx Viruses?

scientific article published on 19 December 2017

Cross-seasonal patterns of avian influenza virus in breeding and wintering migratory birds: a flyway perspective

scientific article published on 13 October 2011

Dietary mercury exposure to endangered California Clapper Rails in San Francisco Bay.

scientific article

Discovering Loose Group Movement Patterns from Animal Trajectories

Dissolved Oxygen in Guadalupe Slough and Pond A3W, South San Francisco Bay, California, August and September 2007

scientific article published in 2008

Do Bar-Headed Geese Train for High Altitude Flights?

scientific article published in August 2017

Does mercury contamination reduce body condition of endangered California clapper rails?

scientific article

Duck migration and past influenza A (H5N1) outbreak areas

scientific article

Eco-virological approach for assessing the role of wild birds in the spread of avian influenza H5N1 along the Central Asian Flyway

scientific article (publication date: 2012)

Ecological Effects of Climate Change on Salt Marsh Wildlife: A Case Study from a Highly Urbanized Estuary

scholarly article by Karen M. Thorne et al published November 2012 in Journal of Coastal Research

Effects of Wetland Management on Carrying Capacity of Diving Ducks and Shorebirds in a Coastal Estuary

article

Effects of radiotransmitters on the reproductive performance of Cassin’s auklets

scientific article published in 2004

Endangered species management and ecosystem restoration: finding the common ground

scientific article published in 2016

Endogenous contributions to egg protein formation in lesser scaup Aythya affinis

article by Kyle A. Cutting et al published November 2011 in Journal of Avian Biology

Enhanced invertebrate prey production following estuarine restoration supports foraging for multiple species of juvenile salmonids (Oncorhynchus spp.)

scientific article published in 2017

Erratum to: GPS Location History Data Mining and Anomalous Detection: The Scenario of Bar-Headed Geese Migration

scholarly article

Erratum to: Measuring sediment accretion in early tidal marsh restoration

article

Evidence of infection by H5N2 highly pathogenic avian influenza viruses in healthy wild waterfowl

scientific article published in 2008

Fecal indicator bacteria and Salmonella in ponds managed as bird habitat, San Francisco Bay, California, USA.

scientific article

Field detection of avian influenza virus in wild birds: evaluation of a portable rRT-PCR system and freeze-dried reagents

scientific article published on 4 March 2010

Final report for sea-level rise response modeling for San Francisco Bay estuary tidal marshes

scholarly article by John Y. Takekawa et al published 2013 in Open-File Report

Flooding regimes increase avian predation on wildlife prey in tidal marsh ecosystems

scientific article published in February 2019

Flying over an infected landscape: distribution of highly pathogenic avian influenza H5N1 risk in South Asia and satellite tracking of wild waterfowl

scientific article

Flying with the wind: scale dependency of speed and direction measurements in modelling wind support in avian flight

scientific article

Foraging and Growth Potential of Juvenile Chinook Salmon after Tidal Restoration of a Large River Delta

GPS Location History Data Mining and Anomalous Detection: The Scenario of Bar-Headed Geese Migration

Gender Identification Of Caspian Terns Using External Morphology And Discriminant Function Analysis

Goose Migration across the Himalayas: Migratory Routes and Movement Patterns of Bar-headed Geese

High-resolution bathymetry and topography of south San Francisco Bay, California

Himalayan Thoroughfare: Migratory Routes of Ducks over the Rooftop of the World

Home Range, Habitat Selection, and Movements of California Black Rails at Tidal Marshes at San Francisco Bay, California

scholarly article by Danika C. Tsao et al published November 2009 in The Condor

Identifying Nest Predators of American Avocets (Recurvirostra americana) and Black-Necked Stilts (Himantopus mexicanus) in San Francisco Bay, California

Importance of Biogeomorphic and Spatial Properties in Assessing a Tidal Salt Marsh Vulnerability to Sea-level Rise

scholarly article by Karen M. Thorne et al published 23 November 2013 in Estuaries and Coasts

Integrating animal movement with habitat suitability for estimating dynamic migratory connectivity

article

Investigating Home Range, Movement Pattern, and Habitat Selection of Bar-headed Geese during Breeding Season at Qinghai Lake, China

article

Lessons from the past: isotopes of an endangered rail as indicators of underlying change to tidal marsh habitats

scientific article

MERCURY CONCENTRATIONS IN BLOOD AND FEATHERS OF PRE-BREEDING FORSTER'S TERNS IN RELATION TO SPACE USE OF SAN FRANCISCO BAY, CALIFORNIA, USA, HABITATS

article

Mapping Elevations of Tidal Wetland Restoration Sites in San Francisco Bay: Comparing Accuracy of Aerial Lidar with a Singlebeam Echosounder

Mapping avian influenza transmission risk at the interface of domestic poultry and wild birds

scientific article published on 30 August 2013

Mapping migratory flyways in Asia using dynamic Brownian bridge movement models

scientific article

Mass Mortality Attributed to Acanthocephaliasis at a Gull-Billed Tern (Gelochelidon nilotica) Colony in Coastal California

scientific article

Measuring sediment accretion in early tidal marsh restoration

article

Mercury bioaccumulation and risk to three waterbird foraging guilds is influenced by foraging ecology and breeding stage

scientific article

Mercury concentrations and space use of pre-breeding American avocets and black-necked stilts in San Francisco Bay.

scientific article published on 27 June 2007

Mercury concentrations in blood and feathers of prebreeding Forster's terns in relation to space use of San Francisco Bay, California, USA, habitats

scientific article published in April 2008

Mercury contamination and effects on survival of American avocet and black-necked stilt chicks in San Francisco Bay.

scientific article published on 14 August 2007

Mercury correlations among six tissues for four waterbird species breeding in San Francisco Bay, California, USA.

scientific article published in October 2008

Mercury in birds of San Francisco Bay-Delta, California: trophic pathways, bioaccumulation, and ecotoxicological risk to avian reproduction

scientific article published in 2014

Migration of waterfowl in the East Asian flyway and spatial relationship to HPAI H5N1 outbreaks

scientific article published on March 2010

Migration of whooper swans and outbreaks of highly pathogenic avian influenza H5N1 virus in eastern Asia

scientific article

Migration strategy affects avian influenza dynamics in mallards (Anas platyrhynchos).

scientific article published on 13 September 2012

Migratory Ducks and Protected Wetlands in India

scholarly article

Movement analysis of free-grazing domestic ducks in Poyang Lake, China: a disease connection

scientific article

Movement ecology of five Afrotropical waterfowl species from Malawi, Mali and Nigeria

Movement patterns of Bar-headed Geese Anser indicus during breeding and post-breeding periods at Qinghai Lake, China

article

Movements of Radio-Marked California Ridgway's Rails During Monitoring Surveys: Implications for Population Monitoring

Movements of wild ruddy shelducks in the Central Asian Flyway and their spatial relationship to outbreaks of highly pathogenic avian influenza H5N1.

scientific article published on 09 September 2013

Post-release survival of surf scoters following an oil spill: an experimental approach to evaluating rehabilitation success

scientific article

Potential Effects of Habitat Change on Migratory Bird Movements and Avian Influenza Transmission in the East Asian-Australasian Flyway

scientific article published in 2023

Potential effects of mercury on threatened California black rails

scientific article published on 22 July 2008

Potential spread of highly pathogenic avian influenza H5N1 by wildfowl: dispersal ranges and rates determined from large-scale satellite telemetry

scientific article published in 2010

Previous success and current body condition determine breeding propensity in Lesser Scaup: evidence for the individual heterogeneity hypothesis

article

Quantification of damage to eelgrass (Zostera marina) beds and evidence-based management strategies for boats anchoring in San Francisco Bay

scientific article published on 02 May 2019

Range-wide patterns of migratory connectivity in the western sandpiper Calidris mauri

Rapid Diagnosis of Avian Influenza Virus in Wild Birds: Use of a Portable rRT-PCR and Freeze-dried Reagents in the Field

scientific article published on August 2, 2011

Relation Between Species Assemblages Of Fishes and Water Quality In Salt Ponds and Sloughs In South San Francisco Bay

Rice Production Systems and Avian Influenza: Interactions between Mixed-Farming Systems, Poultry and Wild Birds

article

Rising Tides: Assessing Habitat Vulnerability for an Endangered Salt Marsh-Dependent Species with Sea-Level Rise

scientific article published on 4 December 2018

Risks of avian influenza transmission in areas of intensive free-ranging duck production with wild waterfowl

scientific article

Sea-level rise, habitat loss, and potential extirpation of a salt marsh specialist bird in urbanized landscapes

scholarly article by Jordan Rosencranz et al published August 2018 in Ecology and Evolution

Seasonal impoundment alters patterns of tidal wetland plant diversity across spatial scales

scientific article published on 10 February 2021

Sexing California Gulls Using Morphometrics and Discriminant Function Analysis

Spatial Modeling of Wild Bird Risk Factors for Highly Pathogenic A(H5N1) Avian Influenza Virus Transmission

scientific article

Spring Migration of Northern Pintails from Texas and New Mexico, USA

article

Spring migration of Northern Pintails from California's Central Valley wintering area tracked with satellite telemetry: routes, timing, and destinations

article

Survival of postfledging Forster's terns in relation to mercury exposure in San Francisco Bay.

scientific article published on 20 June 2008

Temporal segmentation of animal trajectories informed by habitat use

scientific article published in 2016

The Aerosphere as a Network Connector of Organisms and Their Diseases

scientific article published in 2017

The trans-Himalayan flights of bar-headed geese ( Anser indicus )

scientific article published on May 31, 2011

Tidal and seasonal effects on survival rates of the endangered California clapper rail: does invasive Spartina facilitate greater survival in a dynamic environment?

Tracking the Autumn Migration of the Bar-Headed Goose (Anser indicus) with Satellite Telemetry and Relationship to Environmental Conditions

scientific article published in 2011

Trends and habitat associations of waterbirds using the South Bay Salt Pond Restoration Project, San Francisco Bay, California

scientific article published in 2018

U.S. Geological Survey science strategy for highly pathogenic avian influenza in wildlife and the environment (2016–2020)

scientific article published in 2016

U.S. Pacific coastal wetland resilience and vulnerability to sea-level rise.

scientific article published on 21 February 2018

USGS science in Menlo Park -- a science strategy for the U.S. Geological Survey Menlo Park Science Center, 2005-2015

Unintended consequences of management actions in salt pond restoration: cascading effects in trophic interactions

scientific article published on June 2015

Vegetation Community Response to Tidal Marsh Restoration of a Large River Estuary

scholarly article by Lisa J. Belleveau et al published May 2015 in Northwest Science

Vertical Zonation and Niche Breadth of Tidal Marsh Plants Along the Northeast Pacific Coast

article

Victims and vectors: highly pathogenic avian influenza H5N1 and the ecology of wild birds

article

Waterfowl Spring Migratory Behavior and Avian Influenza Transmission Risk in the Changing Landscape of the East Asian-Australasian Flyway

article

Waterfowl ecology and avian influenza in California: do host traits inform us about viral occurrence?

scientific article published in March 2010

Wetland Accretion Rate Model of Ecosystem Resilience (WARMER) and Its Application to Habitat Sustainability for Endangered Species in the San Francisco Estuary

article

Wild bird migration across the Qinghai-Tibetan plateau: a transmission route for highly pathogenic H5N1

scientific article