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List of works by Xun Xu

1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

scientific article published on 04 February 2019

10KP: A phylodiverse genome sequencing plan.

scientific article

A catalog of bacterial reference genomes from cultivated human oral bacteria

scientific article published in 2023

A gene catalogue of the Sprague-Dawley rat gut metagenome.

scientific article

A single bacterium restores the microbiome dysbiosis to protect bones from destruction in a rat model of rheumatoid arthritis

scientific article published on 17 July 2019

An LC-MS based untargeted metabolomics study identified novel biomarkers for coronary heart disease

scientific article published on 22 September 2016

An atlas of the protein-coding genes in the human, pig, and mouse brain

scientific article published on 01 March 2020

An improved 2b-RAD approach (I2b-RAD) offering genotyping tested by a rice (Oryza sativa L.) F2 population

scientific article

An invasive zone in human liver cancer identified by Stereo-seq promotes hepatocyte–tumor cell crosstalk, local immunosuppression and tumor progression

scientific article published in 2023

Analysis of 427 genomes reveals moso bamboo population structure and genetic basis of property traits

scientific article published in 2021

Author Correction: A chickpea genetic variation map based on the sequencing of 3,366 genomes

scientific article published in 2022

Author Correction: The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

scientific article published on 16 July 2020

Case report of a Li-Fraumeni syndrome-like phenotype with a de novo mutation in CHEK2.

scientific article published on July 2016

Cell transcriptomic atlas of the non-human primate Macaca fascicularis

scientific article published on 13 April 2022

Comparative population genomics reveals the domestication history of the peach, Prunus persica, and human influences on perennial fruit crops

scientific article

Copy number variations of HLA-I and activation of NKp30 pathway determine the sensitivity of gastric cancer cells to the cytotoxicity of natural killer cells

scientific article published on 14 September 2015

Cross-species single-cell spatial transcriptomic atlases of the cerebellar cortex

scientific article published on 26 September 2024

DNB-based on-chip motif finding: A high-throughput method to profile different types of protein-DNA interactions

scientific article published on 31 July 2020

Deconvolution of single-cell multi-omics layers reveals regulatory heterogeneity

scientific article published in Nature Communications

Delayed diagnosis of congenital myasthenia due to associated mitochondrial enzyme defect

scientific article published on 10 December 2014

Development of coupling controlled polymerizations by adapter-ligation in mate-pair sequencing for detection of various genomic variants in one single assay

scientific article published on 01 August 2019

Draft Genomes of Two Artocarpus Plants, Jackfruit (A. heterophyllus) and Breadfruit (A. altilis)

scientific article published on 24 December 2019

Draft genome sequence of the Tibetan medicinal herb Rhodiola crenulata.

scientific article

Enhancement of de novo sequencing, assembly and annotation of the Mongolian gerbil genome with transcriptome sequencing and assembly from several different tissues

scientific article published on 27 November 2019

Expanding the phenotype of PRPS1 syndromes in females: neuropathy, hearing loss and retinopathy

scientific article

Fern genomes elucidate land plant evolution and cyanobacterial symbioses

article

Generation of hircine-induced pluripotent stem cells by somatic cell reprogramming ⬇️

scientific article published on March 15, 2011

Genome sequence and analysis of the tuber crop potato

scientific article

Genomic Analyses from Non-invasive Prenatal Testing Reveal Genetic Associations, Patterns of Viral Infections, and Chinese Population History

Genomic sequencing and editing revealed the GRM8 signaling pathway as potential therapeutic targets of squamous cell lung cancer

scientific article published on 27 October 2018

Global marine microbial diversity and its potential in bioprospecting

scientific article published on 04 September 2024

HIVID: An efficient method to detect HBV integration using low coverage sequencing ⬇️

scientific article published on July 15, 2013

Inherited bone marrow failure associated with germline mutation of ACD, the gene encoding telomere protein TPP1.

scientific article

Integrated metabolomics and metagenomics analysis of plasma and urine identified microbial metabolites associated with coronary heart disease

scientific article published on 2 March 2016

Isolation and phylogenetic study of Rift Valley fever virus from the first imported case to China

scientific article published on 2 May 2017

Isolation and whole genome sequencing of fetal cells from maternal blood towards the ultimate non-invasive prenatal testing

scientific article published on 16 November 2017

Ma et al. reply

scientific article published in Nature

Mendelian randomization analyses support causal relationships between blood metabolites and the gut microbiome

scientific article published in 2022

Metagenome-wide association of gut microbiome features for schizophrenia

scientific article published on 31 March 2020

Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer

scientific article published on 25 September 2015

Minimal Residual Disease Detection and Evolved IGH Clones Analysis in Acute B Lymphoblastic Leukemia Using IGH Deep Sequencing.

scientific article published on 04 October 2016

Multiple IgH Isotypes Including IgD, Subclasses of IgM, and IgY Are Expressed in the Common Ancestors of Modern Birds.

scientific article

Mutation in mitochondrial ribosomal protein S7 (MRPS7) causes congenital sensorineural deafness, progressive hepatic and renal failure and lactic acidemia

scientific article published on 2 January 2015

Mutations in topoisomerase IIβ result in a B cell immunodeficiency

scientific article published on 13 August 2019

New insights from Opisthorchis felineus genome: update on genomics of the epidemiologically important liver flukes

scientific article published on 22 May 2019

Non-targeted metabolomics and lipidomics LC-MS data from maternal plasma of 180 healthy pregnant women

scientific article

Noninvasive prenatal testing for autosomal recessive conditions by maternal plasma sequencing in a case of congenital deafness

scientific article

Novel genetic loci associated HLA-B*08:01 positive myasthenia gravis

scientific article published on 13 October 2017

Novel loci and pathways significantly associated with longevity

scientific article published on 25 February 2016

OTG-snpcaller: an optimized pipeline based on TMAP and GATK for SNP calling from ion torrent data

scientific article published on May 2014

Pearl millet genome sequence provides a resource to improve agronomic traits in arid environments.

scientific article

Phylogenomics resolves the timing and pattern of insect evolution

scientific article (publication date: 6 November 2014)

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis

scientific article published in Science

Pregnancy-induced metabolic phenotype variations in maternal plasma

scientific article published on 27 January 2014

Redefining the structural motifs that determine RNA binding and RNA editing by pentatricopeptide repeat proteins in land plants.

scientific article

Resequencing 545 ginkgo genomes across the world reveals the evolutionary history of the living fossil

scientific article published on 13 September 2019

Resequencing of 429 chickpea accessions from 45 countries provides insights into genome diversity, domestication and agronomic traits

scientific article published on 29 April 2019

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

scientific article

Search for the potential "second-hit" mechanism underlying the onset of familial hemophagocytic lymphohistiocytosis type 2 by whole-exome sequencing analysis.

scientific article

Sequencing and comparative analysis of three Chlorella genomes provide insights into strain-specific adaptation to wastewater

scientific article published on 02 July 2019

Sequencing of the MHC region defines HLA-DQA1 as the major genetic risk for seropositive rheumatoid arthritis in Han Chinese population

scientific article published on 01 April 2019

Sex Differences in Genetic Associations With Longevity

Signatures of Crested Ibis MHC Revealed by Recombination Screening and Short-Reads Assembly Strategy.

scientific article

Single cell atlas for 11 non-model mammals, reptiles and birds

scientific article published on 06 December 2021

Single-cell RNA-seq reveals dynamic transcriptome profiling in human early neural differentiation

scientific article published on 01 November 2018

Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor

scientific article

Stromal Gene Expression is Predictive for Metastatic Primary Prostate Cancer

article

The Cycas genome and the early evolution of seed plants

scientific article published on 18 April 2022

The Different T-cell Receptor Repertoires in Breast Cancer Tumors, Draining Lymph Nodes, and Adjacent Tissues.

scientific article published on 30 December 2016

The OMSSAPercolator: an automated tool to validate OMSSA results.

scientific article

The Streptococcus suis transcriptional landscape reveals adaptation mechanisms in pig blood and cerebrospinal fluid.

scientific article

The correlation of copy number variations with longevity in a genome-wide association study of Han Chinese

scientific article published on 01 June 2018

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

scientific article published on 3 May 2016

The genome of Prasinoderma coloniale unveils the existence of a third phylum within green plants

scientific article published on 22 June 2020

The genomic landscape of Epstein-Barr virus-associated pulmonary lymphoepithelioma-like carcinoma

scientific article published on 16 July 2019

The gut microbiome in atherosclerotic cardiovascular disease.

scientific article published on 10 October 2017

The sacred lotus genome provides insights into the evolution of flowering plants ⬇️

scientific article published on October 11, 2013

The sheep genome illuminates biology of the rumen and lipid metabolism

scientific article

The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells.

scientific article

The trans-omics landscape of COVID-19

scientific article published on 27 July 2021

Unlocking plant genetics with telomere-to-telomere genome assemblies

scientific article published on 24 July 2024

Value of whole exome sequencing for syndromic retinal dystrophy diagnosis in young patients

scientific article published on 2 October 2014

Whole Exome Sequencing Identifies the Genetic Basis of Late-Onset Leigh Syndrome in a Patient with MRI but Little Biochemical Evidence of a Mitochondrial Disorder

scientific article published on 26 June 2016

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