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List of works by David Mouillot

A Climate-Driven Functional Inversion of Connected Marine Ecosystems

scientific article published on 08 November 2018

A Common Toolbox to Understand, Monitor or Manage Rarity? A Response to Carmona et al.

scientific article

A functional approach reveals community responses to disturbances

scientific article

A functional vulnerability framework for biodiversity conservation

scientific article published in 2022

A global database for metacommunity ecology, integrating species, traits, environment and space

scientific article published on 08 January 2020

A guide for using functional diversity indices to reveal changes in assembly processes along ecological gradients

A new method to control error rates in automated species identification with deep learning algorithms

scientific article published on 03 July 2020

A niche-based modeling approach to phytoplankton community assembly rules

scientific article

A phylogenetic perspective on the evolution of Mediterranean teleost fishes ⬇️

scientific article (publication date: 2012)

A quantitative review of abundance‐based species distribution models

scientific article published on 16 December 2021

A road map for integrating eco-evolutionary processes into biodiversity models

scientific article

A thirteen-million-year divergence between two lineages of Indonesian coelacanths

scientific article published on 13 January 2020

A unifying approach to understanding transitional waters: Fundamental properties emerging from ecotone ecosystems

scientific article published in 2013

A unifying quantitative framework for exploring the multiple facets of microbial biodiversity across diverse scales ⬇️

scientific article published on June 4, 2013

Accumulation curves of environmental DNA sequences predict coastal fish diversity in the coral triangle

scientific article published on 08 July 2020

Additive effects of climate change on connectivity between marine protected areas and larval supply to fished areas

scientific article published in 2014

Additive partitioning of diversity including species differences: a comment on Hardy & Senterre (2007)

scientific article published in 2008

Applying convolutional neural networks to speed up environmental DNA annotation in a highly diverse ecosystem

scientific article published on 01 January 2022

Assembly rules of ectoparasite communities across scales: combining patterns of abiotic factors, host composition, geographic space, phylogeny and traits

article

Asynchrony of taxonomic, functional and phylogenetic diversity in birds

scientific article

Author Correction: A global database for metacommunity ecology, integrating species, traits, environment and space

scientific article published on 02 March 2020

Author Correction: A new method to control error rates in automated species identification with deep learning algorithms

scientific article published on 04 September 2020

Author Correction: Global vulnerability of marine mammals to global warming

scientific article published on 03 March 2020

Author Correction: Prioritizing phylogenetic diversity captures functional diversity unreliably

scientific article published on 04 February 2019

Author Correction: Protecting the global ocean for biodiversity, food and climate

correction of a scholarly article

Beta-specificity: the turnover of host species in space and another way to measure host specificity

scientific article published on 8 July 2010

Beyond taxonomic diversity patterns: how do α, β and γ components of bird functional and phylogenetic diversity respond to environmental gradients across France?

scientific article published on 28 January 2011

Biodiversity in the Anthropocene: prospects and policy

scientific article published in December 2016

Biogeographic, historical and environmental influences on the taxonomic and functional structure of Atlantic reef fish assemblages

scholarly article by Mariana G. Bender et al published 7 October 2013 in Global Ecology and Biogeography

Blind assessment of vertebrate taxonomic diversity across spatial scales by clustering environmental DNA metabarcoding sequences

scientific article published on 04 August 2020

Bright spots among the world’s coral reefs ⬇️

scientific article published on 15 June 2016

Climate differently influences the genomic patterns of two sympatric marine fish species

scientific article published in 2021

Combining phylogenetic and ecological information into a new index of host specificity

scientific article published in June 2005

Combining projected changes in species richness and composition reveals climate change impacts on coastal Mediterranean fish assemblages

scientific article published on 30 July 2012

Combining six genome scan methods to detect candidate genes to salinity in the Mediterranean striped red mullet (Mullus surmuletus).

scientific article

Community structure in ichneumonid parasitoids at different spatial scales

scientific article published on 9 July 2008

Community-wide scan identifies fish species associated with coral reef services across the Indo-Pacific

scientific article published on 25 July 2018

Compositional and phylogenetic dissimilarity of host communities drives dissimilarity of ectoparasite assemblages: geographical variation and scale-dependence

scientific article

Conservation physiology across scales: insights from the marine realm

scientific article

Conserving the functional and phylogenetic trees of life of European tetrapods

scientific article

Contrasting changes in taxonomic vs. functional diversity of tropical fish communities after habitat degradation ⬇️

scientific article published on September 1, 2010

Contribution of exotic species, environmental factors and spatial components to the macrophyte assemblages in a Mediterranean lagoon (Thau lagoon, Southern France)

article

Coral reef fishes reveal strong divergence in the prevalence of traits along the global diversity gradient

scientific article

Correction: Quantifying Phylogenetic Beta Diversity: Distinguishing between ‘True’ Turnover of Lineages and Phylogenetic Diversity Gradients

scientific article

Correction: Remote reefs and seamounts are the last refuges for marine predators across the Indo-Pacific

scientific article published on 16 September 2019

Covariance in species diversity and facilitation among non-interactive parasite taxa: all against the host

scientific article published on October 2005

Decomposing phylogenetic entropy into α, β and γ components

scientific article

Defining and measuring ecological specialization

scientific article published in 2010

Disentangling the complex roles of markets on coral reefs in northwest Madagascar

scientific article published in 2020

Disentangling the pathways of land use impacts on the functional structure of fish assemblages in Amazon streams.

scientific article

Disentangling the relative influence of bacterioplankton phylogeny and metabolism on lysogeny in reservoirs and lagoons

scientific article

Divergent responses of pelagic and benthic fish body-size structure to remoteness and protection from humans

scientific article published on 29 February 2024

Does niche overlap control relative abundance in French lacustrine fish communities? A new method incorporating functional traits

scientific article

ECOLOGY – Ecological effects of marine protected areas: conservation, restoration, and functioning

Ecological characteristics of flea species relate to their suitability as plague vectors

scientific article published on 31 May 2006

Ecological constraints coupled with deep-time habitat dynamics predict the latitudinal diversity gradient in reef fishes

scientific article published on 18 September 2019

Ecological traits shape genetic diversity patterns across the Mediterranean Sea: a quantitative review on fishes

article

Ecophylogenetics: advances and perspectives

scientific article

Ectoparasitic "jacks-of-all-trades": relationship between abundance and host specificity in fleas (Siphonaptera) parasitic on small mammals

scientific article published on September 2004

Emergence of structural patterns in neutral trophic networks

scientific article

Environment drives high phylogenetic turnover among oceanic bacterial communities ⬇️

scientific article published on January 18, 2012

Environmental DNA illuminates the dark diversity of sharks.

scientific article published on 2 May 2018

Environmental DNA metabarcoding reveals and unpacks a biodiversity conservation paradox in Mediterranean marine reserves

scientific article published on 28 April 2021

Environmental DNA reveals tropical shark diversity in contrasting levels of anthropogenic impact

scientific article

Escaping the perfect storm of simultaneous climate change impacts on agriculture and marine fisheries

scientific article published on 27 November 2019

Evidence that niche specialization explains species-energy relationships in lake fish communities

scientific article

Evolution of host specificity in fleas: is it directional and irreversible?

scientific article published on 25 October 2005

Extensions of Island Biogeography Theory predict the scaling of functional trait composition with habitat area and isolation

scientific article

Field investigations and multi-indicators for shallow water lagoon management: perspective for societal benefit

article by Patrice Brehmer et al published November 2011 in Aquatic Conservation: Marine and Freshwater Ecosystems

Fish communities diverge in species but converge in traits over three decades of warming

scientific article published on 22 August 2019

Fish community comparisons along environmental gradients in lakes of France and north-east USA

article

FishMed: traits, phylogeny, current and projected species distribution of Mediterranean fishes, and environmental data

article

Forecasted coral reef decline in marine biodiversity hotspots under climate change

scientific article

From projected species distribution to food-web structure under climate change

scientific article

Functional Rarity: The Ecology of Outliers

scientific article

Functional characters combined with null models reveal inconsistency in mechanisms of species turnover in lacustrine fish communities

article

Functional diversity and redundancy across fish gut, sediment and water bacterial communities

scientific article

Functional diversity measures: an overview of their redundancy and their ability to discriminate community assembly rules

scientific article published in 2010

Functional ecology of fish: current approaches and future challenges

Functional over-redundancy and high functional vulnerability in global fish faunas on tropical reefs.

scientific article

Functional rarity of coral reef fishes at the global scale: Hotspots and challenges for conservation

scientific article published on 29 August 2018

Functional regularity: a neglected aspect of functional diversity

scientific article published on 20 November 2004

Functional reorganization of marine fish nurseries under climate warming

article

Functional structure of biological communities predicts ecosystem multifunctionality

scientific article

Functionally distinct tree species support long-term productivity in extreme environments

scientific article published on 19 January 2022

GAPeDNA: Assessing and mapping global species gaps in genetic databases for eDNA metabarcoding

scientific article published on 17 March 2021

Genetic difference but functional similarity among fish gut bacterial communities through molecular and biochemical fingerprints ⬇️

scientific article published on December 2, 2011

Genomic insights into the historical and contemporary demographics of the grey reef shark

scientific article published on 16 March 2022

Geographic isolation and larval dispersal shape seascape genetic patterns differently according to spatial scale.

scientific article published on 5 June 2018

Global biogeography of reef fishes: a hierarchical quantitative delineation of regions

scientific article

Global correlates of terrestrial and marine coverage by protected areas on islands

scientific article published on 07 September 2020

Global determinants of freshwater and marine fish genetic diversity

scientific article published on 10 February 2020

Global distribution and conservation status of ecologically rare mammal and bird species

scientific article published on 08 October 2020

Global mismatch between fishing dependency and larval supply from marine reserves

scientific article

Global mismatch between species richness and vulnerability of reef fish assemblages

scientific article

Global vulnerability of marine mammals to global warming

scientific article published on 17 January 2020

Gravity of human impacts mediates coral reef conservation gains ⬇️

article published in the Proceedings of the National Academy of Sciences of the United States of America

Herbivorous fishes and the potential of Caribbean marine reserves to preserve coral reef ecosystems

High intervality explained by phylogenetic constraints in host-parasite webs

scientific article published in July 2008

Historical and contemporary determinants of global phylogenetic structure in tropical reef fish faunas

scientific article published in 2015

Historical colonization of the Mediterranean Sea by Atlantic fishes: do biological traits matter?

Host specificity and the probability of discovering species of helminth parasites

scientific article published in June 2005

Host specificity in phylogenetic and geographic space

scientific article

How accessible are coral reefs to people? A global assessment based on travel time

scientific article published on 15 February 2016

How many replicates to accurately estimate fish biodiversity using environmental DNA on coral reefs?

scientific article published on 06 October 2021

Human-mediated loss of phylogenetic and functional diversity in coral reef fishes

scientific article

Identifying barriers to gene flow and hierarchical conservation units from seascape genomics: a modelling framework applied to a marine predator

scientific article published in 2022

Identifying hotspots of parasite diversity from species-area relationships: host phylogeny versus host ecology

article

Increasing southern invasion enhances congruence between endemic and exotic Mediterranean fish fauna

scholarly article by Frida Ben Rais Lasram & David Mouillot published 27 May 2008 in Biological Invasions

Inferring associations among parasitic gamasid mites from census data

scientific article

Inferring food web structure from predator-prey body size relationships

scholarly article by Dominique Gravel et al published 2 September 2013 in Methods in Ecology and Evolution

Inferring functional diversity from environmental DNA metabarcoding

scientific article published on 3 March 2023

Influence of season and host age on wild boar parasites in Corsica using indicator species analysis

scientific article

Interspecific differences in environmental response blur trait dynamics in classic statistical analyses

scientific article published in 2019

Introduction of Relative Abundance Distribution (RAD) Indices, Estimated from the Rank-Frequency Diagrams (RFD), to Assess Changes in Community Diversity

article by David Mouillot & Alain Lepretre published 2000 in Environmental Monitoring and Assessment

Is the abundance of species determined by their functional traits? A new method with a test using plant communities

scientific article published on 21 March 2007

Isolation and no-entry marine reserves mitigate anthropogenic impacts on grey reef shark behavior

article by Jean-Baptiste Juhel et al published 27 February 2019 in Scientific Reports

Isolation drives taxonomic and functional nestedness in tropical reef fish faunas

article published in 2016

Juvenile Fish Assemblages in Caribbean Seagrass Beds: Does Nearby Habitat Matter?

Latitudinal mismatches between the components of mammal-flea interaction networks

article published in 2011

Let more big fish sink: Fisheries prevent blue carbon sequestration-half in unprofitable areas

scientific article published on 28 October 2020

Long-Distance Benefits of Marine Reserves: Myth or Reality?

scientific article published on 15 February 2019

Low connectivity between Mediterranean marine protected areas: a biophysical modeling approach for the dusky grouper Epinephelus marginatus

scientific article

Low functional β-diversity despite high taxonomic β-diversity among tropical estuarine fish communities

scientific article

Low human interest for the most at-risk reef fishes worldwide

scientific article published on 19 July 2024

Mammalian phylogenetic diversity-area relationships at a continental scale

scientific article

Marine reserves lag behind wilderness in the conservation of key functional roles

scientific article

Maximizing regional biodiversity requires a mosaic of protection levels

scientific article published on 19 May 2021

Meeting fisheries, ecosystem function, and biodiversity goals in a human-dominated world

scientific article published on 01 April 2020

Multifaceted diversity-area relationships reveal global hotspots of mammalian species, trait and lineage diversity

scientific article

Nestedness versus modularity in ecological networks: two sides of the same coin?

scientific article

New multidimensional functional diversity indices for a multifaceted framework in functional ecology

scientific article

Niche overlap estimates based on quantitative functional traits: a new family of non-parametric indices

scientific article

On the integration of biotic interaction and environmental constraints at the biogeographical scale

scientific article published on 19 November 2015

Parasite biodiversity and its determinants in coastal marine teleost fishes of Brazil

scientific article published in June 2004

Parasite specialization from a phylogenetic perspective: a new index of host specificity

scientific article

Parasite species coexistence and limiting similarity: a multiscale look at phylogenetic, functional and reproductive distances

scientific article published on 28 October 2005

Patterns and multi-scale drivers of phytoplankton species richness in temperate peri-urban lakes

scientific article published on 04 April 2016

Patterns and processes in reef fish body size

scholarly article

Phylogenetic signal in module composition and species connectivity in compartmentalized host-parasite networks

scientific article published on 27 February 2012

Plant community impact on productivity: Trait diversity or key(stone) species effects?

scientific article published on 22 January 2022

Plate tectonics drive tropical reef biodiversity dynamics

scientific article

Predicting climate-driven regime shifts versus rebound potential in coral reefs

scientific article

Prioritizing phylogenetic diversity captures functional diversity unreliably

scientific article published in Nature Communications

Projected climate change and the changing biogeography of coastal Mediterranean fishes

scholarly article by Camille Albouy et al published 27 November 2012 in Journal of Biogeography

Projected impacts of climate warming on the functional and phylogenetic components of coastal Mediterranean fish biodiversity

article

Projecting the impact of regional land-use change and water management policies on lake water quality: an application to periurban lakes and reservoirs

scientific article

Protected and threatened components of fish biodiversity in the Mediterranean sea.

scientific article

Protecting the global ocean for biodiversity, food and climate

scientific article published on 17 March 2021

Publisher Correction: A thirteen-million-year divergence between two lineages of Indonesian coelacanths

scientific article published on 10 March 2020

Quantifying phylogenetic beta diversity: distinguishing between 'true' turnover of lineages and phylogenetic diversity gradients

scientific article

Quaternary coral reef refugia preserved fish diversity.

scientific article

Rare species contribute disproportionately to the functional structure of species assemblages

scientific article published in April 2016

Rare species support vulnerable functions in high-diversity ecosystems

scientific article

Rebound in functional distinctiveness following warming and reduced fishing in the North Sea

scientific article published on 13 January 2021

Reef accessibility impairs the protection of sharks

scientific article published in 2017

Remote reefs and seamounts are the last refuges for marine predators across the Indo-Pacific

scientific article published on 06 August 2019

Reply to Bode and Murdoch: A proper integration of species–area relationship uncertainties into return on investment analyses is needed

scholarly article

Reply to: "Global conservation of phylogenetic diversity captures more than just functional diversity"

scientific article published on 20 February 2019

Reply to: Quantifying the carbon benefits of ending bottom trawling

scientific article published on 10 May 2023

Representing taxonomic, phylogenetic and functional diversity: new challenges for Mediterranean marine-protected areas

scholarly article by François Guilhaumon et al published 17 November 2014 in Diversity and Distributions

Resource predictability and host specificity in fleas: the effect of host body mass

scientific article published on 28 March 2006

Responses of coral reef fishes to past climate changes are related to life-history traits

scientific article

Searching for general patterns in parasite ecology: host identity versus environmental influence on gamasid mite assemblages in small mammals.

scientific article

Selecting statistical models and variable combinations for optimal classification using otolith microchemistry.

scientific article published in June 2011

Similarity in ectoparasite faunas of Palaearctic rodents as a function of host phylogenetic, geographic or environmental distances: which matters the most?

scientific article

Social-environmental drivers inform strategic management of coral reefs in the Anthropocene

scientific article published on 12 August 2019

Spatial graphs highlight how multi‐generational dispersal shapes landscape genetic patterns

scientific article published in 2020

Spatial mismatch and congruence between taxonomic, phylogenetic and functional diversity: the need for integrative conservation strategies in a changing world

scientific article

Spatial mismatch of phylogenetic diversity across three vertebrate groups and protected areas in Europe

scientific article (publication date: June 2014)

Spearfishing regulation benefits artisanal fisheries: the ReGS indicator and its application to a multiple-use Mediterranean marine protected area

scientific article (publication date: 2011)

Species ecology explains the spatial components of genetic diversity in tropical reef fishes

scientific article published on 29 September 2021

Species–area relationships as a tool for the conservation of benthic invertebrates in Italian coastal lagoons

article

Sustaining Rare Marine Microorganisms: Macroorganisms As Repositories and Dispersal Agents of Microbial Diversity

scientific article

Taxonomic and regional uncertainty in species-area relationships and the identification of richness hotspots

scientific article

Testing the niche apportionment hypothesis with parasite communities: is random assortment always the rule?

scientific article published on 16 January 2006

The Mediterranean Sea under siege: spatial overlap between marine biodiversity, cumulative threats and marine reserves

scientific article (publication date: 20 July 2011)

The aesthetic value of reef fishes is globally mismatched to their conservation priorities

scientific article published on 07 June 2022

The biodiversity of the Mediterranean Sea: estimates, patterns, and threats ⬇️

scientific article

The challenge of delineating biogeographical regions: nestedness matters for Indo-Pacific coral reef fishes

scholarly article by David Mouillot et al published 8 August 2013 in Journal of Biogeography

The comparative ecology and biogeography of parasites

scientific article (publication date: 27 August 2011)

The coral sea: physical environment, ecosystem status and biodiversity assets

scientific article

The detection of socio-economic impacts of protected area creation

scientific article published on 18 May 2022

The dimensionality and structure of species trait spaces

scientific article published on 20 May 2021

The dissimilarity of species interaction networks

article

The ecological causes of functional distinctiveness in communities

The last hotspots of structural complexity as conservation targets in the Mesoamerican Coral Reef

scientific article published on 02 March 2021

The multidimensionality of the niche reveals functional diversity changes in benthic marine biotas across geological time

scientific article published on 12 April 2011

The relationship between specialization and local abundance: the case of helminth parasites of birds.

scientific article

The relationship between species richness and productivity in metazoan parasite communities

scientific article

The use of fish parasites as biological indicators of anthropogenic influences in coral-reef lagoons: a case study of Apogonidae parasites in New-Caledonia

scientific article

Towards a consensus for calculating dendrogram-based functional diversity indices

scientific article published in 2008

Trait similarity in reef fish faunas across the world's oceans

scientific article published on 01 March 2021

Trait structure and redundancy determine sensitivity to disturbance in marine fish communities

scientific article published on 08 May 2019

Trophic theory of island biogeography

scientific article published on 2 August 2011

Unexpected high vulnerability of functions in wilderness areas: evidence from coral reef fishes

scientific article published in December 2016

Use of environmental DNA in assessment of fish functional and phylogenetic diversity

scientific article published on 05 July 2021

What are the factors determining the probability of discovering a flea species (Siphonaptera)?

scientific article published on 5 July 2005

mFD: an R package to compute and illustrate the multiple facets of functional diversity

scientific article published on 13 December 2021

mmSAR: an R-package for multimodel species-area relationship inference

scientific article published in 2010

‘Low-hanging fruit’ for conservation of marine vertebrate species at risk in the Mediterranean Sea

scientific article published in 2014

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