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List of works by Michael W. Deem

A Pareto Algorithm for Efficient De Novo Design of Multi-functional Molecules.

scientific article published on 21 July 2016

A database of new zeolite-like materials

scientific article published on 18 March 2011

A multi-scale model for correlation in B cell VDJ usage of zebrafish

scientific article published on 10 August 2011

A novel sequence-based antigenic distance measure for H1N1, with application to vaccine effectiveness and the selection of vaccine strains

scientific article

Amino acid alphabet size in protein evolution experiments: better to search a small library thoroughly or a large library sparsely?

scientific article

Analysis of Hierarchical Organization in Gene Expression Networks Reveals Underlying Principles of Collective Tumor Cell Dissemination and Metastatic Aggressiveness of Inflammatory Breast Cancer.

scientific article published on 4 July 2018

Brain Modularity Mediates the Relation between Task Complexity and Performance.

scientific article published on 4 May 2017

CRISPR recognizes as many phage types as possible without overwhelming the Cas machinery

scientific article published on 24 March 2020

Charge-frustrated model of bicontinuous phases

scientific article published on 01 May 1994

Comment on Ndifon et al., "On the use of hemagglutination-inhibition for influenza surveillance: Surveillance data are predictive of influenza vaccine effectiveness"

scientific article published on 12 June 2009

Corrigendum: Static and Dynamic Measures of Human Brain Connectivity Predict Complementary Aspects of Human Cognitive Performance

scholarly article published in Frontiers in Human Neuroscience

Design of Organic Structure-Directing Agents for the Controlled Synthesis of Zeolites for Use in Carbon Dioxide/Methane Membrane Separations

scientific article published on 17 December 2019

Development of modularity in the neural activity of children's brains ⬇️

scientific article published on 26 January 2015

Differential transport of DNA by a rectified Brownian motion device

scientific article published on 01 January 2000

Disclination asymmetry in two-dimensional nematic liquid crystals with unequal Frank constants

scientific article published on 01 December 1996

Discovery of optimal zeolites for challenging separations and chemical transformations using predictive materials modeling

scientific article

Dispersion coefficients from a field-theoretic renormalization of fluid mechanics.

scientific article published on 9 October 2001

Enantiomerically enriched, polycrystalline molecular sieves.

scientific article

Epitope analysis for influenza vaccine design.

scientific article published on January 2005

Evolution of H3N2 influenza virus in a guinea pig model

scientific article (publication date: 2011)

Evolution: life has evolved to evolve: comment on "How life changes itself: the Read-Write (RW) genome" by James Shapiro

scientific article

Evolutionary processes in finite populations.

scientific article published on 13 February 2013

Evolvability is a selectable trait

scientific article

Field-theoretic approximations for normal diffusion in random velocity fields

scientific article published on 01 May 1995

Formation of interfaces in bicontinuous phases

scientific article published on 01 May 1994

Free energies of isolated five- and sevenfold disclinations in hexatic membranes

scientific article published on 01 March 1996

Glassy dynamics in the adaptive immune response prevents autoimmune disease

scientific article published on 29 September 2005

Heterogeneous diversity of spacers within CRISPR (clustered regularly interspaced short palindromic repeats).

scientific article published on 14 September 2010

Hierarchical evolution of animal body plans.

scientific article published on 30 September 2009

Hierarchy in gene expression is predictive of risk, progression, and outcome in adult acute myeloid leukemia ⬇️

scientific article

Hierarchy of gene expression data is predictive of future breast cancer outcome ⬇️

scientific article

In silico prediction of MOFs with high deliverable capacity or internal surface area

scientific article published in May 2015

In silico screening of carbon-capture materials

scientific article published on 27 May 2012

Influenza evolution and H3N2 vaccine effectiveness, with application to the 2014/2015 season

scientific article published on 16 June 2016

Library design in combinatorial chemistry by Monte Carlo methods.

scientific article

Low-dimensional clustering detects incipient dominant influenza strain clusters

scientific article

Machine-learning approach to the design of OSDAs for zeolite beta

scientific article published on 07 February 2019

Markov chains of infinite order and asymptotic satisfaction of balance: application to the adaptive integration method.

scientific article published in April 2005

Mechanical and dielectric properties of pure-silica-zeolite low-k materials

scientific article published in September 2006

Microarray and EST database estimates of mRNA expression levels differ: the protein length versus expression curve for C. elegans

scientific article

Modular epitope binding predicts influenza quasispecies dominance and vaccine effectiveness: Application to 2018/19 season

scientific article published on 03 May 2019

Modular knowledge systems accelerate human migration in asymmetric random environments

scientific article published in December 2016

Modularity enhances the rate of evolution in a rugged fitness landscape. ⬇️

scientific article

Modularity of the metabolic gene network as a prognostic biomarker for hepatocellular carcinoma.

scientific article published on 22 February 2018

Modulation of base-specific mutation and recombination rates enables functional adaptation within the context of the genetic code.

scientific article published in September 2004

Monte Carlo Simulations

scientific article published on 01 January 2008

Multicanonical molecular dynamics by variable-temperature thermostats and variable-pressure barostats

scientific article published in January 2013

Non-classical phase diagram for virus bacterial coevolution mediated by clustered regularly interspaced short palindromic repeats

scientific article published on February 2017

Parallel tempering: theory, applications, and new perspectives

scientific article published on December 2005

Phase diagrams of quasispecies theory with recombination and horizontal gene transfer.

scientific article published on 29 January 2007

Physical theory of the competition that allows HIV to escape from the immune system

scientific article published on 03 November 2006

Predicting Fixation Tendencies of the H3N2 Influenza Virus by Free Energy Calculation.

scientific article

Predicting Influenza H3N2 Vaccine Efficacy from Evolution of the Dominant Epitope.

scientific article

Predicting clinical physiology: a Markov chain model of heart rate recovery after spontaneous breathing trials in mechanically ventilated patients

scientific article

Prediction of heart rate response to conclusion of the spontaneous breathing trial by fluctuation dissipation theory

scientific article published on 30 January 2013

Prediction of influenza B vaccine effectiveness from sequence data ⬇️

scientific article

Quantifying influenza vaccine efficacy and antigenic distance.

scientific article published on 19 January 2006

Quantifying selection and diversity in viruses by entropy methods, with application to the haemagglutinin of H3N2 influenza

scientific article published on 04 May 2011

Quasispecies theory for evolution of modularity.

scientific article published on 28 January 2015

Quasispecies theory for finite populations

scientific article published on 6 January 2010

Quasispecies theory for horizontal gene transfer and recombination

scientific article published on 23 December 2008

Quasispecies theory for multiple-peak fitness landscapes

scientific article published on 11 April 2006

Reaction, Lévy flights, and quenched disorder

scientific article published on 19 December 2001

Reply to Xu and Ye: On the Sufficiency of the Pepitope Method

scientific article published on 01 January 2019

Selective pressure to increase charge in immunodominant epitopes of the H3 hemagglutinin influenza protein

scientific article

Sequence space localization in the immune system response to vaccination and disease

scientific article published on 07 August 2003

Shrinking and freezing of embedded domains

scientific article published on 01 May 1991

Single molecule sequencing of the M13 virus genome without amplification

scientific article published on 18 December 2017

Single molecule targeted sequencing for cancer gene mutation detection

scientific article published on 19 May 2016

Spontaneous emergence of modularity in a model of evolving individuals

scientific article published on 30 November 2007

Spontaneous emergence of modularity in a model of evolving individuals and in real networks

scientific article published on 17 March 2009

Static and Dynamic Measures of Human Brain Connectivity Predict Complementary Aspects of Human Cognitive Performance.

scientific article published on 24 August 2017

Structure and response in the world trade network

scientific article published on 05 November 2010

Synthesis of a specified, silica molecular sieve by using computationally predicted organic structure-directing agents

scientific article published on 24 June 2014

T Cell Repertoire Diversity Is Decreased in Type 1 Diabetes Patients

scientific article published on 23 December 2016

Template-Framework Interactions in Tetraethylammonium-Directed Zeolite Synthesis

scientific article (publication date: 23 December 2016)

The Standard Genetic Code Facilitates Exploration of the Space of Functional Nucleotide Sequences

scientific article published on 29 June 2018

The emergence of modularity in biological systems

scientific article

The epitope regions of H1-subtype influenza A, with application to vaccine efficacy

scientific article published on 3 July 2009

The physicist's guide to one of biotechnology's hottest new topics: CRISPR-Cas.

scientific article published on 15 March 2018

Theoretical aspects of immunity.

scientific article published on January 2010

Two-dimensional diffusion in the presence of topological disorder

scientific article published on 18 August 2003

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