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List of works by Andrew Leaver-Fay

A generic program for multistate protein design

scientific article

Adding diverse noncanonical backbones to rosetta: enabling peptidomimetic design

scientific article (publication date: 2013)

An adaptive dynamic programming algorithm for the side chain placement problem.

scientific article published in January 2005

Combined covalent-electrostatic model of hydrogen bonding improves structure prediction with Rosetta

scientific article (publication date: 10 February 2015)

Computational design of a PAK1 binding protein

scientific article

Computational protein design with explicit consideration of surface hydrophobic patches ⬇️

scientific article published on December 16, 2011

Computationally Designed Bispecific Antibodies using Negative State Repertoires

scientific article published on 16 March 2016

De Novo Enzyme Design Using Rosetta3 ⬇️

scientific article published on May 16, 2011

Faster placement of hydrogens in protein structures by dynamic programming

Foldit Standalone: a video game-derived protein structure manipulation interface using Rosetta

scientific article

Generation of bispecific IgG antibodies by structure-based design of an orthogonal Fab interface

scientific article

Maintaining solvent accessible surface area under rotamer substitution for protein design

scientific article published in June 2007

Modeling symmetric macromolecular structures in Rosetta3

scientific article

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

scientific article

On-the-Fly Rotamer Pair Energy Evaluation in Protein Design

scholarly article

Predicting protein structures with a multiplayer online game

scientific article

ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules

scientific article (publication date: 2011)

Role of conformational sampling in computing mutation-induced changes in protein structure and stability

scientific article

RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite

scientific article (publication date: 2011)

Rotamer-Pair Energy Calculations Using a Trie Data Structure

article by Andrew Leaver-Fay et al published 2005 in Lecture Notes in Computer Science

Scientific benchmarks for guiding macromolecular energy function improvement

scientific article (publication date: 2013)

Structure-guided forcefield optimization

scientific article published on 12 April 2011

SwiftLib: rapid degenerate-codon-library optimization through dynamic programming

scientific article

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