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List of works by Martin Gruebele

A Survey of λ Repressor Fragments from Two-State to Downhill Folding

scientific article

A learning algorithm to discover soluble vesicle-binding helical peptides

scientific article published in April 2010

A natural missing link between activated and downhill protein folding scenarios

scientific article published on 11 February 2010

A one-dimensional free energy surface does not account for two-probe folding kinetics of protein alpha(3)D.

scientific article published in February 2009

A quantitative connection of experimental and simulated folding landscapes by vibrational spectroscopy

scientific article published on 03 October 2018

Absolute comparison of simulated and experimental protein-folding dynamics

scientific article

An Instrument Assembly and Data Science Lab for Early Undergraduate Education

scientific article published in 2023

An experimental survey of the transition between two-state and downhill protein folding scenarios

scholarly article

An extended dynamical hydration shell around proteins

scholarly article

An in vitro mimic of in-cell solvation for protein folding studies

scientific article published on 06 February 2020

An in-silico human cell model reveals the influence of spatial organization on RNA splicing

scientific article published on 25 March 2020

Beta-sheet folding mechanisms from perturbation energetics

scientific article

Better biomolecule thermodynamics from kinetics ⬇️

scientific article published on July 7, 2011

Binary and ternary aggregation within tethered protein constructs

scientific article

CARPe diem

scientific article published on July 2014

Can Local Probes Go Global? A Joint Experiment-Simulation Analysis of λ(6-85) Folding

scientific article

Cell Volume Controls Protein Stability and Compactness of the Unfolded State

scientific article published on 26 October 2018

Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations

scientific article

Composition-dependent metallic glass alloys correlate atomic mobility with collective glass surface dynamics

scientific article published on 10 June 2016

Computational design and experimental testing of the fastest-folding β-sheet protein

scientific article

Context-dependent contributions of backbone hydrogen bonding to beta-sheet folding energetics

scientific article

Correction to Context-Dependent Effects of Asparagine Glycosylation on Pin WW Folding Kinetics and Thermodynamics

scientific article published on 27 February 2012

Coupled protein diffusion and folding in the cell ⬇️

scientific article

Crowding effects on the small, fast-folding protein λ6–85 ⬇️

scientific article published on January 1, 2012

Crowding, Sticking, and Partial Folding of GTT WW Domain in a Small Cytoplasm Model

scientific article published on 28 May 2020

Detection-dependent kinetics as a probe of folding landscape microstructure

scientific article

Direct Imaging of Protein Stability and Folding Kinetics in Hydrogels

scientific article published on 29 May 2017

Disulfide Bridges: Bringing Together Frustrated Structure in a Bioactive Peptide

scientific article published on April 2016

Dodine as a Kosmo-Chaotropic Agent

scientific article published on 08 May 2019

Dodine as a Protein Denaturant: The Best of Two Worlds? ⬇️

scientific article published on August 16, 2013

Dodine as a transparent protein denaturant for circular dichroism and infrared studies

scientific article published on 3 March 2016

Downhill protein folding: evolution meets physics

scientific article

Eliminating a Protein Folding Intermediate by Tuning a Local Hydrophobic Contact

scientific article

Engineering a beta-sheet protein toward the folding speed limit

scientific article published in August 2005

Environmental Fluctuations and Stochastic Resonance in Protein Folding

scientific article published on 29 December 2015

Estimation of Relative Protein-RNA Binding Strengths from Fluctuations in the Bound State

scientific article

Evaluating beta-turn mimics as beta-sheet folding nucleators

scientific article

Fast Relaxation Imaging in Living Cells ⬇️

scientific article published on August 1, 2011

Fast folding of an RNA tetraloop on a rugged energy landscape detected by a stacking-sensitive probe

scientific article published on September 2009

Fast protein folding kinetics

scientific article

Fast-folding proteins under stress

scientific article

Folding at the speed limit ⬇️

scientific article published on May 8, 2003

Folding lambda-repressor at its speed limit

scientific article

Folding thermodynamics and kinetics of YNMG RNA hairpins: specific incorporation of 8-bromoguanosine leads to stabilization by enhancement of the folding rate

scientific article

Functional Importance of Short-Range Binding and Long-Range Solvent Interactions in Helical Antifreeze Peptides ⬇️

scientific article published on July 17, 2012

Functional role of ribosomal signatures

scientific article (publication date: 15 December 2010)

Globular Protein Folding In Vitro and In Vivo

scientific article

Heat shock-induced chaperoning by Hsp70 is enabled in-cell

scientific article published on 26 September 2019

Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment

scientific article published in February 2004

High Fidelity Quantum Gates with Vibrational Qubits ⬇️

scientific article published on August 21, 2012

High speed nonlinear interferometric vibrational analysis of lipids by spectral decomposition

scientific article

High-Resolution Mapping of the Folding Transition State of a WW Domain

scientific article published on 12 February 2016

High-Speed Nonlinear Interferometric Vibrational Imaging of Biological Tissue With Comparison to Raman Microscopy

scientific article published on December 2009

How does solvation in the cell affect protein folding and binding?

scientific article published on 12 October 2017

How to mark off paths on the protein energy landscape

scientific article

Imaging Excited Orbitals of Quantum Dots: Experiment and Electronic Structure Theory

scientific article published on 30 October 2015

Imaging and Manipulating Energy Transfer Among Quantum Dots at Individual Dot Resolution

scientific article

Imaging of Carbon Nanotube Electronic States Polarized by the Field of an Excited Quantum Dot

scientific article published on 29 January 2019

In-Cell Protein-Protein Contacts: Transient Interactions in the Crowd

scientific article published on 10 September 2019

In-Cell Titration of Small Solutes Controls Protein Stability and Aggregation

scientific article published on 10 August 2018

Influence of hPin1 WW N-terminal domain boundaries on function, protein stability, and folding

scientific article

Kinetic equivalence of the heat and cold structural transitions of lambda6-85.

scientific article published in February 2005

Kinetics are probe-dependent during downhill folding of an engineered lambda6-85 protein

scientific article

Labeling for Quantitative Comparison of Imaging Measurements in Vitro and in Cells

scientific article published on 16 March 2018

Laser absorption scanning tunneling microscopy of carbon nanotubes

scientific article published in January 2006

Long-range protein–water dynamics in hyperactive insect antifreeze proteins ⬇️

scientific article published on December 31, 2012

Loop and stem dynamics during RNA hairpin folding and unfolding

scientific article

Mechanical approach to chemical transport

scientific article published on 19 September 2016

Misplaced helix slows down ultrafast pressure-jump protein folding

scientific article

Molecular histopathology by spectrally reconstructed nonlinear interferometric vibrational imaging

scientific article published on 23 November 2010

Molecular species-sensitive optical coherence tomography using coherent anti-stokes Raman scattering spectroscopy

Molecular vibrational energy flow and dilution factors in an anharmonic state space

scientific article published in January 2006

Molecules: what kind of a bag of atoms?

scientific article published in November 2009

More protected vibrational states at the dissociation limit of SCCl2.

scientific article published on 30 September 2013

Multi-scale dynamics at the glassy silica surface

scientific article published on 01 November 2019

Multistep Kinetics of the U1A–SL2 RNA Complex Dissociation ⬇️

scientific article published on March 23, 2011

Native conformational dynamics of the spliceosomal U1A protein

scientific article published on 24 February 2015

Observation of complete pressure-jump protein refolding in molecular dynamics simulation and experiment

scientific article published on 03 February 2014

On readout of vibrational qubits using quantum beats

scientific article published in December 2014

On the extended beta-conformation propensity of polypeptides at high temperature

scientific article published in December 2003

Optical Control of Metal Ion Probes in Cells and Zebrafish Using Highly Selective DNAzymes Conjugated to Upconversion Nanoparticles

scientific article published on 04 December 2018

Orientation-dependent imaging of electronically excited quantum dots

scientific article published in February 2018

Periodic and stochastic thermal modulation of protein folding kinetics

scientific article

Perspective: Reaches of chemical physics in biology

scientific article published in September 2013

Polymeric "Clickase" Accelerates the Copper Click Reaction of Small Molecules, Proteins, and Cells

scientific article published on 04 June 2019

Pressure- and heat-induced protein unfolding in bacterial cells: crowding vs. sticking.

scientific article

Proline can have opposite effects on fast and slow protein folding phases

scientific article

Protein dynamics: from molecules, to interactions, to biology

scientific article published on 20 March 2009

Protein folding dynamics in the cell

scientific article published on 17 June 2014

Protein folding stability and dynamics imaged in a living cell

scientific article

Protein folding: the free energy surface

scientific article

Protein native-state stabilization by placing aromatic side chains in N-glycosylated reverse turns

scientific article published on February 2011

Protein stability at negative pressure

scientific article published on 28 April 2010

Proteins: "Boil 'Em, Mash 'Em, Stick 'Em in a Stew"

scientific article published on 26 September 2019

Quinary protein structure and the consequences of crowding in living cells: Leaving the test‐tube behind ⬇️

scientific article published on August 14, 2013

Rapid Perturbation of Free‐Energy Landscapes: From In Vitro to In Vivo ⬇️

scientific article published on April 19, 2012

Rate-temperature relationships in lambda-repressor fragment lambda 6-85 folding

scientific article published in October 2004

ReAsH as a Quantitative Probe of In-Cell Protein Dynamics

scientific article published on 09 March 2016

Reaching the protein folding speed limit with large, sub-microsecond pressure jumps

scientific article

Reducing lambda repressor to the core

scientific article

Role of Electrostatics in Protein-RNA Binding: The Global vs the Local Energy Landscape

scientific article published on 14 August 2017

Role of Pressure in the Growth of Hexagonal Boron Nitride Thin Films from Ammonia-Borane

article published in 2016

STM Imaging of Localized Surface Plasmons on Individual Gold Nanoislands.

scientific article published on 2 April 2018

Simulation-based fitting of protein-protein interaction potentials to SAXS experiments

scientific article published on 7 March 2008

Slowing down downhill folding: a three-probe study

scientific article

Soluble Zwitterionic Poly(sulfobetaine) Destabilizes Proteins

scientific article published on 17 August 2018

Solvation dynamics of biomolecules: modeling and terahertz experiments

scientific article published on 15 September 2008

Solvent-tuning the collapse and helix formation time scales of lambda(6-85)*.

scientific article

Solving the low dimensional Smoluchowski equation with a singular value basis set.

scientific article published in October 2010

Stochastic Resonance in Protein Folding Dynamics

scientific article

Structural Characterization of λ-Repressor Folding from All-Atom Molecular Dynamics Simulations ⬇️

scientific article published on April 11, 2012

Structure, Function and Folding of Phosphoglycerate Kinase are Strongly Perturbed by Macromolecular Crowding

scholarly article by Antonios Samiotakis et al published February 2011 in Biophysical Journal

Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding

scientific article

Structure-function-folding relationship in a WW domain

scientific article

Studying IDP Stability and Dynamics by Fast Relaxation Imaging in Living Cells ⬇️

scientific article published on January 1, 2012

Subcellular modulation of protein VlsE stability and folding kinetics.

scientific article

Temperature dependence of protein folding kinetics in living cells ⬇️

scientific article published on June 4, 2012

Temporal variation of a protein folding energy landscape in the cell

scientific article published on 13 December 2013

Ten-microsecond molecular dynamics simulation of a fast-folding WW domain

scientific article published on 13 March 2008

The Behavioral Space of Zebrafish Locomotion and Its Neural Network Analog

scientific article

The Effect of Fluorescent Protein Tags on Phosphoglycerate Kinase Stability Is Nonadditive.

scientific article

The Fast and the Slow: Folding and Trapping of λ6–85 ⬇️

scientific article published on November 14, 2011

The Gold Nanorod-Biology Interface: From Proteins to Cells to Tissue

scientific article published on April 2013

The Surface of Protein λ6-85 Can Act as a Template for Recurring Poly(ethylene glycol) Structure

scientific article published on 17 July 2017

The diffusion coefficient for PGK folding in eukaryotic cells

scientific article published on November 2010

The energy landscape of glassy dynamics on the amorphous hafnium diboride surface

scientific article published on November 2014

The extracellular protein VlsE is destabilized inside cells

scientific article

The terahertz dance of water with the proteins: the effect of protein flexibility on the dynamical hydration shell of ubiquitin

scientific article published in January 2009

The vibrationally adiabatic torsional potential energy surface of trans-stilbene

article

Time-resolved dissociation of the light-harvesting 1 complex of Rhodospirillum rubrum, studied by infrared laser temperature jump

scientific article

Transient Helical Structure during PI3K and Fyn SH3 Domain Folding ⬇️

scientific article published on April 18, 2013

Tribute to Peter G. Wolynes

scientific article published in October 2013

Tuning lambda6-85 towards downhill folding at its melting temperature

scientific article published on 19 April 2007

Tuning the Heterogeneous Early Folding Dynamics of Phosphoglycerate Kinase ⬇️

scientific article published on October 10, 2003

Tuning the free-energy landscape of a WW domain by temperature, mutation, and truncation

scientific article

Two structural scenarios for protein stabilization by PEG.

scientific article published on 2 June 2014

Understanding the mechanism of beta-sheet folding from a chemical and biological perspective

scientific article

Weak Chemical Interactions That Drive Protein Evolution: Crowding, Sticking, and Quinary Structure in Folding and Function

scientific article published on 29 July 2019

Weak protein-protein interactions in live cells are quantified by cell-volume modulation

scientific article published on 12 June 2017

Weighing up protein folding ⬇️

scientific article published on December 2, 2010

What causes hyperfluorescence: folding intermediates or conformationally flexible native states?

scientific article

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