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List of works by Sean O'Donoghue

A benchmark dataset for analyzing and visualizing the dynamic epiproteome

scientific article published on 30 May 2019

Arena3D: visualization of biological networks in 3D.

scientific article

Automated NOESY interpretation with ambiguous distance restraints: the refined NMR solution structure of the pleckstrin homology domain from beta-spectrin

scientific article

COMPARTMENTS: unification and visualization of protein subcellular localization evidence

scientific article (publication date: 25 February 2014)

Caipirini: using gene sets to rank literature.

scientific article published on February 2012

Calculation of symmetric multimer structures from NMR data using a priori knowledge of the monomer structure, co-monomer restraints, and interface mapping: The case of leucine zippers.

scientific article

Comprehensive comparison of large-scale tissue expression datasets

scientific article (publication date: 30 June 2015)

Determination of the solution structure of a platelet-adhesion peptide of von Willebrand factor

scientific article published on 01 November 1992

Determination of the structure of symmetric coiled-coil proteins from NMR data: application of the leucine zipper proteins Jun and GCN4.

scientific article published on August 1993

Error distribution derived NOE distance restraints.

scientific article published in August 2006

High resolution NMR solution structure of the leucine zipper domain of the c-Jun homodimer

scientific article

Homology and mutagenesis studies of hamster dihydroorotase

scientific article published on 01 January 1994

How to learn about gene function: text-mining or ontologies?

scientific article published on August 2014

Integrated visual analysis of protein structures, sequences, and feature data.

scientific article

Models of the actin monomer and filament from fluorescence resonance-energy transfer

scientific article published on April 15, 1992

Molecular Graphics: Bridging Structural Biologists and Computer Scientists

scientific article published on 26 September 2019

Monogenic and polygenic determinants of sarcoma risk: an international genetic study

scientific article

Removing the two C-terminal residues of actin affects the filament structure

scientific article published on 01 February 1992

Sisyphus and prediction of protein structure ⬇️

scientific article published on August 1, 1997

SnapShot: Insulin/IGF1 Signaling

scientific article published on 01 May 2015

SnapShot: Phosphoregulation of Mitosis

scientific article published in June 2017

SnapShot: S-Phase Entry and Exit

scientific article published on 01 October 2019

Solution structure of endothelin-3 determined using NMR spectroscopy ⬇️

scientific article published on June 23, 1992

Stereospecificity of substrate usage by glyoxalase 1: nuclear magnetic resonance studies of kinetics and hemithioacetal substrate conformation.

scientific article published in March 1994

Structure of actin observed by fluorescence resonance energy transfer spectroscopy.

scientific article published in April 1992

Temporal ordering of omics and multiomic events inferred from time-series data

scientific article published on 16 July 2020

Tertiary structure prediction using mean-force potentials and internal energy functions: successful prediction for coiled-coil geometries

scientific article published on 01 January 1997

The Dark Proteome Database.

scientific article

The PSSH database of alignments between protein sequences and tertiary structures.

scientific article published on January 2003

Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.

scientific article published on 06 April 2016

Visual analytics of signalling pathways using time profiles.

scientific article published in January 2015

Visualising intrinsic disorder and conformational variation in protein ensembles

scientific article published on 12 June 2014

Visualization and Analysis of Epiproteome Dynamics

article

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