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List of works by Marcus Thomas Pius Gilbert

31° South: The physiology of adaptation to arid conditions in a passerine bird

scientific article published on 06 August 2019

800,000 year old mammoth DNA, modern elephant DNA or PCR artefact?

scientific article (publication date: 22 February 2007)

A 5700 year-old human genome and oral microbiome from chewed birch pitch

scientific article published on 17 December 2019

A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures ⬇️

scientific article

A comparative study of ancient sedimentary DNA, pollen and macrofossils from permafrost sediments of northern Siberia reveals long-term vegetational stability

scientific article

A comparison of storage methods for gut microbiome studies in teleosts: Insights from rainbow trout (Oncorhynchus mykiss)

scientific article published on 16 March 2019

A draft genome sequence of the elusive giant squid, Architeuthis dux

scientific article published on 01 January 2020

A genomic exploration of the early evolution of extant cats and their sabre-toothed relatives

scientific article published in 2021

A guide to the application of Hill numbers to DNA-based diversity analyses

scientific article published on 05 May 2019

A multi-omics approach unravels metagenomic and metabolic alterations of a probiotic and synbiotic additive in rainbow trout (Oncorhynchus mykiss)

scientific article published on 30 January 2022

A multidisciplinary study of archaeological grape seeds

scientific article (publication date: February 2010)

A preliminary analysis of the DNA and diet of the extinct Beothuk: a systematic approach to ancient human DNA.

scientific article

A refined model of the genomic basis for phenotypic variation in vertebrate hemostasis

scientific article published on 30 June 2015

A simple method for the parallel deep sequencing of full influenza A genomes.

scientific article

A simplified DNA extraction protocol for unsorted bulk arthropod samples that maintains exoskeletal integrity

Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims

scientific article published on February 2004

Adaptive venom evolution and toxicity in octopods is driven by extensive novel gene formation, expansion, and loss

scientific article published on 01 November 2020

Agriculture shapes the trophic niche of a bat preying on multiple pest arthropods across Europe: evidence from DNA metabarcoding

scientific article published on 31 December 2017

An Aboriginal Australian genome reveals separate human dispersals into Asia

scientific article (publication date: 7 October 2011)

An assessment of the use of human samples in ancient DNA studies ⬇️

doctoral thesis by Marcus Thomas Pius Gilbert

An expanded mammal mitogenome dataset from Southeast Asia

scientific article

An improved PCR method for endogenous DNA retrieval in contaminated Neandertal samples based on the use of blocking primers

An invertebrate stomach's view on vertebrate ecology: certain invertebrates could be used as "vertebrate samplers" and deliver DNA-based information on many aspects of vertebrate ecology

scientific article

An ‛Aukward' Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks

scientific article

Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution

scientific article (publication date: 11 May 2009)

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

scientific article (publication date: 23 March 2010)

Ancient DNA analysis of Scandinavian medieval drinking horns and the horn of the last aurochs bull

scholarly article by Maiken Hemme Bro-Jørgensen et al published November 2018 in Journal of Archaeological Science

Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?

scientific article

Ancient DNA reveals lack of continuity between neolithic hunter-gatherers and contemporary Scandinavians

scientific article

Ancient DNA reveals late survival of mammoth and horse in interior Alaska

scholarly article

Ancient DNA reveals that bowhead whale lineages survived Late Pleistocene climate change and habitat shifts

scientific article

Ancient DNA reveals the timing and persistence of organellar genetic bottlenecks over 3,000 years of sunflower domestication and improvement

Ancient DNA reveals traces of Iberian Neolithic and Bronze Age lineages in modern Iberian horses

scientific article

Ancient DNA sequences point to a large loss of mitochondrial genetic diversity in the saiga antelope (Saiga tatarica) since the Pleistocene

scientific article

Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia

scientific article published on 16 December 2019

Ancient DNA unravels the truth behind the controversial GUS Greenlandic Norse fur samples: the bison was a horse, and the muskox and bears were goats

article by Mikkel-Holger S Sinding et al published January 2015 in Journal of Archaeological Science

Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival

scholarly article published 11 February 2019

Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival

scientific article published on 30 July 2019

Ancient and historical DNA in conservation policy

scientific article published in 2022

Ancient and modern environmental DNA

scientific article

Ancient bacteria show evidence of DNA repair

scientific article

Ancient biomolecules from deep ice cores reveal a forested southern Greenland

scientific article

Ancient genomes from Iceland reveal the making of a human population

scientific article published in Science

Ancient genomics

scientific article

Ancient human genome sequence of an extinct Palaeo-Eskimo

scientific article

Ancient human mtDNA genotypes from England reveal lost variation over the last millennium

scientific article published on October 2007

Ancient mitochondrial DNA from hair

scientific article published in June 2004

Ancient mitochondrial DNA from the northern fringe of the Neolithic farming expansion in Europe sheds light on the dispersion process

scientific article

Ancient mitogenomics

scientific article published on 27 September 2009

Ancient pigs reveal a near-complete genomic turnover following their introduction to Europe

scientific article published on 12 August 2019

Application and comparison of large-scale solution-based DNA capture-enrichment methods on ancient DNA.

scientific article

Applied Hologenomics: Feasibility and Potential in Aquaculture.

scientific article published on 29 January 2018

Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic

scientific article published on 10 May 2022

Arctic-adapted dogs emerged at the Pleistocene-Holocene transition

scientific article published on 01 June 2020

Assembly-free and alignment-free sample identification using genome skims

Assessing ancient DNA studies

scientific article (publication date: October 2005)

Assessing the fidelity of ancient DNA sequences amplified from nuclear genes

scientific article (publication date: February 2006)

Authenticity in ancient DNA studies.

scientific article published in January 2006

Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype

scientific article published on 01 August 2019

Avian genomes. A flock of genomes. Introduction

scientific article

Avianbase: a community resource for bird genomics

scientific article

Barking up the wrong tree: modern northern European dogs fail to explain their origin

scientific article

Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level Genomes for all Living Bat Species

scientific article

Beringian paleoecology inferred from permafrost-preserved fungal DNA

scientific article (publication date: February 2005)

Beyond DNA barcoding: The unrealised potential of genome skim data in sample identification

scientific article published on 16 June 2020

Biochemical and physical correlates of DNA contamination in archaeological human bones and teeth excavated at Matera, Italy

article

Biochemistry. Unlocking ancient protein palimpsests

scientific article

Biological adaptations in the Arctic cervid, the reindeer (Rangifer tarandus)

scientific article published on 21 June 2019

Bone Marrow and Bone as a Source for Postmortem RNA*

article published in 2011

Bone biodeterioration-The effect of marine and terrestrial depositional environments on early diagenesis and bone bacterial community

scientific article published on 15 October 2020

Bone-associated gene evolution and the origin of flight in birds

scientific article

Characterisation of insect and plant origins using DNA extracted from small volumes of bee honey

article

Characterising the potential of sheep wool for ancient DNA analyses

Characterization of genetic miscoding lesions caused by postmortem damage

scientific article

Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes

scientific article

Choosing the best plant for the job: a cost-effective assay to prescreen ancient plant remains destined for shotgun sequencing

scientific article (publication date: 2012)

Clarification of the taxonomic relationship of the extant and extinct ovibovids, Ovibos, Praeovibos, Euceratherium and Bootherium

scholarly article

Clovis age Western Stemmed projectile points and human coprolites at the Paisley Caves

scientific article

Comment on "Protein sequences from mastodon and Tyrannosaurus rex revealed by mass spectrometry"

scientific article (publication date: 4 January 2008)

Comparative genomic data of the Avian Phylogenomics Project

scientific article

Comparative genomics reveals insights into avian genome evolution and adaptation

scientific article

Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

scientific article

Comparative performance of two whole-genome capture methodologies on ancient DNA Illumina libraries

scientific article published in 2015

Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species

scientific article (publication date: July 2010)

Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation

scientific article

Complex evolutionary trajectories of sex chromosomes across bird taxa

scientific article published on 11 December 2014

Complexity of avian evolution revealed by family-level genomes

scientific article published in April 2024

Connecting Earth observation to high-throughput biodiversity data

article by Alex Bush et al published 22 June 2017 in Nature Ecology and Evolution

Contrasting population-level responses to Pleistocene climatic oscillations in an alpine bat revealed by complete mitochondrial genomes and evolutionary history inference

article

Convergent evolution of the genomes of marine mammals

scientific article published on 26 January 2015

Convergent transcriptional specializations in the brains of humans and song-learning birds

scientific article

Correction to: High-coverage genomes to elucidate the evolution of penguins

scientific article published on 1 March 2020

Correction: Historical Mammal Extinction on Christmas Island (Indian Ocean) Correlates with Introduced Infectious Disease.

scientific article published on 5 January 2009

Corrigendum

article published in 2014

Critical review of host specificity and its coevolutionary implications in the fig/fig-wasp mutualism

scientific article

Current perspectives and the future of domestication studies

scientific article (publication date: 22 April 2014)

DAMe: a toolkit for the initial processing of datasets with PCR replicates of double-tagged amplicons for DNA metabarcoding analyses.

scientific article

DNA Extraction from Keratin and Chitin

scientific article published on 01 January 2019

DNA extraction from dry museum beetles without conferring external morphological damage

scientific article

DNA extraction from formalin-fixed material

scientific article

DNA extraction from keratin and chitin

scientific article

DNA from keratinous tissue. Part I: hair and nail

scientific article

DNA from keratinous tissue. Part II: feather

scientific article

DNA from pre-Clovis human coprolites in Oregon, North America

scientific article

DNA from soil mirrors plant taxonomic and growth form diversity

scientific article

DNA in ancient bone - where is it located and how should we extract it?

scientific article

DNA metabarcoding and spatial modelling link diet diversification with distribution homogeneity in European bats

scientific article published on 02 March 2020

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

scientific article published on 29 April 2019

Darwin's Fancy Revised: An Updated Understanding of the Genomic Constitution of Pigeon Breeds

scientific article published on 13 February 2020

Debugging diversity - a pan-continental exploration of the potential of terrestrial blood-feeding leeches as a vertebrate monitoring tool

scientific article published on 05 July 2018

Deep sequencing of RNA from ancient maize kernels

scientific article

Demographic reconstruction from ancient DNA supports rapid extinction of the great auk

scientific article published on 26 November 2019

Dense sampling of bird diversity increases power of comparative genomics

scientific article published on 11 November 2020

Diabetic cats have decreased gut microbial diversity and a lack of butyrate producing bacteria

scientific article published on 18 March 2019

Dire wolves were the last of an ancient New World canid lineage

scientific article

Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960

scientific article

Direct evidence of milk consumption from ancient human dental calculus

scientific article

Distribution patterns of postmortem damage in human mitochondrial DNA.

scientific article

Diverse plant and animal genetic records from Holocene and Pleistocene sediments

scientific article (publication date: 2 May 2003)

Do Vertebrate Gut Metagenomes Confer Rapid Ecological Adaptation?

scientific article

Documenting DNA in the dust

scientific article published in February 2017

Draft genome of the fungus-growing termite pathogenic fungus Ophiocordyceps bispora (Ophiocordycipitaceae, Hypocreales, Ascomycota)

scientific article

Dynamic evolution of the alpha (α) and beta (β) keratins has accompanied integument diversification and the adaptation of birds into novel lifestyles

scientific article

Early Pleistocene enamel proteome from Dmanisi resolves Stephanorhinus phylogeny

scientific article published on 11 September 2019

Early Pleistocene enamel proteome sequences from Dmanisi resolve Stephanorhinus phylogeny

scholarly article published 10 September 2018

Early allelic selection in maize as revealed by ancient DNA.

scientific article published in November 2003

Earth BioGenome Project: Sequencing life for the future of life

scientific article published on 23 April 2018

Ecological, morphological and genetic divergence of sympatric North Atlantic killer whale populations

scientific article

Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell

scientific article

Environmental DNA for wildlife biology and biodiversity monitoring

scientific article

Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses

scientific article

Erratum to: Comparative performance of the BGISEQ-500 vs Illumina HiSeq2500 sequencing platforms for palaeogenomic sequencing

scholarly article published in GigaScience

Erratum: Corrigendum: The microbiome of New World vultures

scientific article published in Nature Communications

Erratum: Environmental DNA for wildlife biology and biodiversity monitoring

scholarly article published in Trends in Ecology & Evolution

Erratum: The origin and evolution of maize in the Southwestern United States

scholarly article published in Nature Plants

Evaluating Neanderthal Genetics and Phylogeny

scientific article

Evaluating the Y chromosomal timescale in human demographic and lineage dating

scientific article

Evidence for a single loss of mineralized teeth in the common avian ancestor

scientific article published on 11 December 2014

Evolutionary History of Saber-Toothed Cats Based on Ancient Mitogenomics

scientific article published on 18 October 2017

Evolutionary History, Genomic Adaptation to Toxic Diet, and Extinction of the Carolina Parakeet

scientific article published on 12 December 2019

Evolutionary genomics and adaptive evolution of the Hedgehog gene family (Shh, Ihh and Dhh) in vertebrates

scientific article

Extended survival of Pleistocene Siberian wolves into the early 20th century on the island of Honshū

scientific article published on 08 December 2020

Extinct New Zealand megafauna were not in decline before human colonization

scientific article (publication date: April 2014)

Feasibility of applying shotgun metagenomic analyses to grapevine leaf, rhizosphere and soil microbiome characterisation

scientific article published on 21 June 2021

Fellow travellers: a concordance of colonization patterns between mice and men in the North Atlantic region

scientific article

Fifty thousand years of Arctic vegetation and megafaunal diet

scientific article (publication date: 6 February 2014)

Finding the founder of Stockholm - a kinship study based on Y-chromosomal, autosomal and mitochondrial DNA

scientific article published on 5 April 2011

Fossil avian eggshell preserves ancient DNA

scientific article (publication date: 7 July 2010)

Functional roles of Aves class-specific cis-regulatory elements on macroevolution of bird-specific features

scientific article

Further evidence of Chelonid herpesvirus 5 (ChHV5) latency: high levels of ChHV5 DNA detected in clinically healthy marine turtles

scientific article

Future-proofing environmental DNA and trait-based predictions of food webs

scientific article published in November 2023

GC bias affects genomic and metagenomic reconstructions, underrepresenting GC-poor organisms

scientific article published on 01 February 2020

Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds

scientific article

Genetic affinities of an eradicated European Plasmodium falciparum strain

scientific article published on 20 August 2019

Genetic differentiation among North Atlantic killer whale populations

scientific article published on 11 December 2010

Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain

scientific article

Genetic evidence for patrilocal mating behavior among Neandertal groups

scientific article (publication date: 4 January 2011)

Genome Sequence of Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse

scientific article

Genome Sequence of a 5,310-Year-Old Maize Cob Provides Insights into the Early Stages of Maize Domestication

scientific article

Genome sequences of two stress-tolerant Campylobacter jejuni poultry strains, 305 and DFVF1099.

scientific article published on October 2011

Genome-culture coevolution promotes rapid divergence of killer whale ecotypes

scientific article

Genome-resolved metagenomics suggests a mutualistic relationship between Mycoplasma and salmonid hosts

scientific article published on 14 May 2021

Genome-wide Ancestry and Demographic History of African-Descendant Maroon Communities from French Guiana and Suriname.

scientific article published in November 2017

Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean

scientific article

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

scientific article (publication date: March 2014)

Genomes of Pleistocene Siberian Wolves Uncover Multiple Extinct Wolf Lineages

scientific article published on 27 October 2020

Genomic Adaptations and Evolutionary History of the Extinct Scimitar-Toothed Cat, Homotherium latidens

scientific article published on 09 October 2020

Genomic Characterization of a South American Phytophthora Hybrid Mandates Reassessment of the Geographic Origins of Phytophthora infestans

scientific article (publication date: February 2016)

Genomic affinities of two 7,000-year-old Iberian hunter-gatherers

scientific article

Genomic diversity and evolution of the head crest in the rock pigeon

scientific article

Genomic evidence refutes the hypothesis that the Bornean banteng is a distinct species

scientific article published in 2022

Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

scientific article published on 26 April 2021

Genomic population structure of freshwater-resident and anadromous ide (Leuciscus idus) in north-western Europe

scientific article

Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species

scientific article

Genomics: Bird sequencing project takes off.

scientific article published in June 2015

Geographic and temporal dynamics of a global radiation and diversification in the killer whale

scientific article published on 19 June 2015

Glacial survival of boreal trees in northern Scandinavia

scientific article published in March 2012

Global distribution of Chelonid fibropapilloma-associated herpesvirus among clinically healthy sea turtles.

scientific article

Greenland sled dogs at risk of extinction

scientific article published in Science

Grey wolf genomic history reveals a dual ancestry of dogs

scientific article published on 29 June 2022

HIV-2 down, HIV-1 to go? Understanding the possibilities of treatment as prevention

scientific article

Herbarium specimens reveal a historical shift in phylogeographic structure of common ragweed during native range disturbance

scientific article published on 04 March 2014

Hi-C chromosome conformation capture sequencing of avian genomes using the BGISEQ-500 platform

scientific article published on 01 August 2020

High-coverage genomes to elucidate the evolution of penguins

scientific article published on 01 September 2019

High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens

article

High-throughput sequencing of core STR loci for forensic genetic investigations using the Roche Genome Sequencer FLX platform

scientific article

Histological correlates of post mortem mitochondrial DNA damage in degraded hair.

scientific article published in January 2006

Historical isolation facilitates species radiation by sexual selection: Insights from Chorthippus grasshoppers

scientific article published on 16 October 2020

Historical mammal extinction on Christmas Island (Indian Ocean) correlates with introduced infectious disease

scientific article published in 2008

Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

scientific article published in 2021

Holo-Omics: Integrated Host-Microbiota Multi-omics for Basic and Applied Biological Research

scientific article published on 25 July 2020

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

scientific article published on 19 February 2018

Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

article

Host‐derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin

article

Hybridization capture using short PCR products enriches small genomes by capturing flanking sequences (CapFlank)

scientific article

Identification of microsatellites from an extinct moa species using high-throughput (454) sequence data.

scientific article

Identification of transcription factor genes involved in anthocyanin biosynthesis in carrot (Daucus carota L.) using RNA-Seq

article

Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia).

scientific article published on 8 March 2018

Insights into the processes behind the contamination of degraded human teeth and bone samples with exogenous sources of DNA

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

article

Interspecific Gene Flow Shaped the Evolution of the Genus Canis

scientific article published on 01 December 2019

Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes

scientific article (publication date: 17 June 2008)

Investigating the potential use of environmental DNA (eDNA) for genetic monitoring of marine mammals

scientific article

Islands in the ice: detecting past vegetation on Greenlandic nunataks using historical records and sedimentary ancient DNA meta-barcoding

scientific article

Killer whale genomes reveal a complex history of recurrent admixture and vicariance

scientific article published on 27 May 2019

Kouprey (<i>Bos sauveli</i>) genomes unveil polytomic origin of wild Asian <i>Bos</i>

scientific article published on 06 October 2021

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

scientific article published on 21 June 2019

Leech blood-meal invertebrate-derived DNA reveals differences in Bornean mammal diversity across habitats

scientific article published on 27 November 2020

Leeches as a source of mammalian viral DNA and RNA—a study in medicinal leeches

Long-term RNA persistence in postmortem contexts

scientific article

Long-term survival of ancient DNA in Egypt: response to Zink and Nerlich (2003).

scientific article published on September 2005

Low frequency of paleoviral infiltration across the avian phylogeny

scientific article

Macroevolution of complex retroviruses

scientific article published in September 2009

Marine turtle mitogenome phylogenetics and evolution

scientific article published on 26 June 2012

Meta-barcoding of 'dirt' DNA from soil reflects vertebrate biodiversity

scientific article

Millennia of genomic stability within the invasive Para C Lineage ofSalmonella enterica

article published in 2017

Mind the gut: genomic insights to population divergence and gut microbial composition of two marine keystone species.

scientific article published on 2 May 2018

Minimally destructive DNA extraction from archaeological artefacts made from whale baleen

scholarly article by Mikkel-Holger S Sinding published in December 2012

Mitochondrial DNA from pre-Columbian Ciboneys from Cuba and the prehistoric colonization of the Caribbean

scientific article

Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain

scientific article

Mitochondrial genome diversity and population structure of the giant squid Architeuthis: genetics sheds new light on one of the most enigmatic marine species

scientific article (publication date: 22 May 2013)

Mitochondrial genomes of Danish vertebrate species generated for the national DNA reference database, DNAmark

scientific article published in 2020

Mitogenome sequencing reveals shallow evolutionary histories and recent divergence time between morphologically and ecologically distinct European whitefish (Coregonus spp.).

scientific article published on 17 April 2012

Mitogenomic analyses from ancient DNA.

scientific article

Mitogenomic evidence of close relationships between New Zealand’s extinct giant raptors and small-sized Australian sister-taxa

article

Mitogenomic insights into a recently described and rarely observed killer whale morphotype

article by Andrew D. Foote et al published 14 June 2013 in Polar Biology

Mitogenomic phylogenetic analyses of the Delphinidae with an emphasis on the Globicephalinae

scientific article (publication date: 10 March 2011)

Mitogenomics of the Extinct Cave Lion, Panthera spelaea (Goldfuss, 1810), Resolve its Position within the Panthera Cats

MobiSeq: De Novo SNP discovery in model and non-model species through sequencing the flanking region of transposable elements

article

MobiSeq: De novo SNP discovery in model and non‐model species through sequencing the flanking region of transposable elements

article

Modern Siberian dog ancestry was shaped by several thousand years of Eurasian-wide trade and human dispersal

scientific article published in 2021

Modern wolves trace their origin to a late Pleistocene expansion from Beringia

article published in 2018

Molecular clocks indicate turnover and diversification of modern coleoid cephalopods during the Mesozoic Marine Revolution

scientific article published in March 2017

Molecular diet analysis of two african free-tailed bats (molossidae) using high throughput sequencing

scientific article

Molecular parallelisms between pigmentation in the avian iris and the integument of ectothermic vertebrates

scientific article published on 23 February 2021

Monitoring endangered freshwater biodiversity using environmental DNA.

scientific article

More on contamination: the use of asymmetric molecular behavior to identify authentic ancient human DNA.

scientific article published on 25 January 2007

Most of the extant mtDNA boundaries in South and Southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans

scientific article (publication date: 4 August 2005)

Most of the extant mtDNA boundaries in south and southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans

scientific article

Multi-omic detection of Mycobacterium leprae in archaeological human dental calculus

scientific article published on 05 October 2020

Multi-omics and potential applications in wine production

scientific article published on 11 December 2018

Multidisciplinary medical identification of a French king's head (Henri IV).

scientific article

Multiplex PCR with minisequencing as an effective high-throughput SNP typing method for formalin-fixed tissue

scientific article published on July 2007

Multiproxy evidence highlights a complex evolutionary legacy of maize in South America

scientific article published in Science

Natural selection shaped the rise and fall of passenger pigeon genomic diversity.

scientific article

Near-Random Distribution of Chromosome-Derived Circular DNA in the Condensed Genome of Pigeons and the Larger, More Repeat-Rich Human Genome

scientific article published on 01 January 2020

Near-complete genome sequencing of swine vesicular disease virus using the Roche GS FLX sequencing platform

scientific article

New insights on single-stranded versus double-stranded DNA library preparation for ancient DNA.

scientific article published in December 2015

No longer locally extinct? Tracing the origins of a lion (Panthera leo) living in Gabon

scientific article published on 01 February 2018

No proof that typhoid caused the Plague of Athens (a reply to Papagrigorakis et al.).

scientific article published on 26 May 2006

Non-destructive sampling of ancient insect DNA

scientific article published in 2009

Non-invasive surveys of mammalian viruses using environmental DNA

scientific article published on 29 March 2020

Non‐invasive surveys of mammalian viruses using environmental DNA

scientific article published in 2021

Odintifier--A computational method for identifying insertions of organellar origin from modern and ancient high-throughput sequencing data based on haplotype phasing

scientific article

Olfactory Receptor Subgenomes Linked with Broad Ecological Adaptations in Sauropsida

scientific article published on 28 July 2015

One Hundred Twenty Years of Koala Retrovirus Evolution Determined from Museum Skins

scientific article published in 2013

One hundred twenty years of koala retrovirus evolution determined from museum skins

scientific article

Optimization of DNA recovery and amplification from non-carbonized archaeobotanical remains

scientific article published on 27 January 2014

Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe

scientific article

Out of the Pacific and back again: insights into the matrilineal history of Pacific killer whale ecotypes

scientific article published in 2011

PALEOBOTANY | Ancient Plant DNA

article

Palaeogenomic insights into the origins of French grapevine diversity

scientific article published on 10 June 2019

Paleo-Eskimo mtDNA genome reveals matrilineal discontinuity in Greenland

scientific article published on 29 May 2008

Paleogenomics Using the 454 Sequencing Platform

Paleogenomics of Archaic Hominins ⬇️

scientific article published on December 20, 2011

Paleovirology reveals the macroevolution of complex retroviruses

scientific article published on 24 September 2009

Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia

scientific article published on 19 July 2018

Parallel adaptation of rabbit populations to myxoma virus

scientific article published on 14 February 2019

Partial genetic turnover in neandertals: continuity in the East and population replacement in the West

scientific article published on 23 February 2012

Pathogens and host immunity in the ancient human oral cavity

scientific article (publication date: April 2014)

Penile density and globally used chemicals in Canadian and Greenland polar bears

scientific article

Persistence of the mitochondrial lineage responsible for the Irish potato famine in extant new world phytophthora infestans

scientific article published on 27 February 2014

Phylogenomic analyses data of the avian phylogenomics project

scientific article

Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children

scientific article

Plasmodium vivax Malaria Viewed through the Lens of an Eradicated European Strain

scientific article published on 01 March 2020

Population genomics of grey wolves and wolf-like canids in North America

scientific article published on 12 November 2018

Population genomics of the Viking world

scientific article published on 16 September 2020

Positive selection on the killer whale mitogenome

scientific article published in September 2010

Post-mortem DNA damage hotspots in Bison (Bison bison) provide evidence for both damage and mutational hotspots in human mitochondrial DNA

article

Postglacial Colonization of Northern Coastal Habitat by Bottlenose Dolphins: A Marine Leading-Edge Expansion?

scientific article published on 01 October 2019

Pre-Clovis Mastodon Hunting 13,800 Years Ago at the Manis Site, Washington

scientific article (publication date: 20 October 2011)

Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros

scientific article published on 30 July 2020

Prehistoric genomes reveal the genetic foundation and cost of horse domestication

scientific article

Probable transmission of coxsackie B3 virus from human to chimpanzee, Denmark

scientific article

Probing the genomic limits of de-extinction in the Christmas Island rat

publication published on 09 March 2022

Profiling the dead: generating microsatellite data from fossil bones of extinct megafauna--protocols, problems, and prospects

scientific article (publication date: 31 January 2011)

Promises and pitfalls of using high-throughput sequencing for diet analysis

scientific article published on 22 November 2018

Protective role of the vulture facial and gut microbiomes aid adaptation to scavenging

Protective role of the vulture facial skin and gut microbiomes aid adaptation to scavenging

Proteomic Analysis of a Pleistocene Mammoth Femur Reveals More than One Hundred Ancient Bone Proteins

scientific article (publication date: 3 February 2012)

Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries

scientific article (publication date: 7 November 2013)

Quantifying Temporal Genomic Erosion in Endangered Species

scientific article published on 27 December 2017

Rare mtDNA haplogroups and genetic differences in rich and poor Danish Iron-Age villages

scientific article

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

scientific article

Recent Asian origin of chytrid fungi causing global amphibian declines.

scientific article

Recent diversification of a marine genus (Tursiops spp.) tracks habitat preference and environmental change

scientific article

Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis

scientific article (publication date: 2007)

Reconsidering domestication from a process archaeology perspective

scientific article published in January 2021

Reconstructing ancient genomes and epigenomes

scientific article published on 9 June 2015

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

scientific article

Recovery of DNA from archaeological insect remains: first results, problems and potential

scholarly article by Gary A. King published in May 2009

Relative performance of two DNA extraction and library preparation methods on archaeological human teeth samples

scientific article published in January 2017

Reply to Pape et al.: the phylogeography of HIV-1 group M subtype B.

scholarly article

Reply to Vigilant and Langergraber: Patrilocality in Neandertals is still the most plausible explanation

scientific article

Rescuing ancient DNA

scientific article

Resistance of degraded hair shafts to contaminant DNA.

scientific article published on 26 April 2005

Resolution of the type material of the Asian elephant, Elephas maximus Linnaeus, 1758 (Proboscidea, Elephantidae)

article

Resolution of the type material of the Asian elephant,Elephas maximusLinnaeus, 1758 (Proboscidea, Elephantidae)

article

Resolving a clinical tuberculosis outbreak using palaeogenomic genome reconstruction methodologies

scientific article published on 23 September 2019

Response to Comment by Goldberg et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"

scientific article published in Science

Response to Comment by Poinar et al. on "DNA from Pre-Clovis Human Coprolites in Oregon, North America"

scientific article published in Science

Response to Comment on "Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts"

scientific article published in Science

Response to Comment on "Whole-genome analyses resolve early branches in the tree of life of modern birds".

scientific article published on September 2015

Response to Drancourt and Raoult

article

Rise and fall of the Beringian steppe bison

scientific article (publication date: 26 November 2004)

Salmon gut microbiota correlates with disease infection status: potential for monitoring health in farmed animals

scientific article published on 20 April 2021

Screening mammal biodiversity using DNA from leeches

Screening mammal biodiversity using DNA from leeches

scientific article published on 01 April 2012

Scrutinizing key steps for reliable metabarcoding of environmental samples

scientific article published in 2017

Second generation sequencing and morphological faecal analysis reveal unexpected foraging behaviour by Myotis nattereri (Chiroptera, Vespertilionidae) in winter.

scientific article

Sequences of microvariant/“off-ladder” STR alleles

Skmer: assembly-free and alignment-free sample identification using genome skims

scientific article published on 13 February 2019

Specialized sledge dogs accompanied Inuit dispersal across the North American Arctic

scientific article published on 27 November 2019

Speciation and demographic history of Atlantic eels (Anguilla anguilla and A. rostrata) revealed by mitogenome sequencing

scientific article

Species-specific responses of Late Quaternary megafauna to climate and humans

scientific article (publication date: 2 November 2011)

Stable isotope and DNA evidence for ritual sequences in Inca child sacrifice

scholarly article

Statistical analysis of post mortem DNA damage-derived miscoding lesions in Neandertal mitochondrial DNA

scientific article

Statistical guidelines for detecting past population shifts using ancient DNA.

scientific article

Storytelling and story testing in domestication

scientific article (publication date: 29 April 2014)

Tag jumps illuminated--reducing sequence-to-sample misidentifications in metabarcoding studies

scientific article published on 5 March 2015

Taxonomic and Functional Characterization of the Microbial Community During Spontaneous Fermentation of Riesling Must

scientific article published on 09 April 2019

Testosterone in ancient hair from an extinct species

scientific article published in 2018

The 'relics of Joan of Arc': a forensic multidisciplinary analysis

scientific article published on 12 November 2009

The Australian dingo is an early offshoot of modern breed dogs

scientific article published on 22 April 2022

The Draft Genome of Extinct European Aurochs and its Implications for De-Extinction

article

The Genomic Footprints of the Fall and Recovery of the Crested Ibis

scientific article published on 10 January 2019

The Late Pleistocene distribution of vicuñas (Vicugna vicugna) and the “extinction” of the gracile llama (“Lama gracilis”): New molecular data

scholarly article

The discovery of Neotropical Lepidosira (Collembola, Entomobryidae) and its systematic position ⬇️

scientific article published on 21 July 2019

The effect of ancient DNA damage on inferences of demographic histories

scientific article published on 24 July 2008

The emergence of HIV/AIDS in the Americas and beyond

scientific article

The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae)

scientific article

The evolutionary history of dogs in the Americas

scientific article

The evolutionary history of extinct and living lions

scientific article published on 04 May 2020

The first complete mitochondrial genome data of Hippocampus kuda originating from Malaysia

scientific article published on 21 May 2020

The genetic impact of an Ebola outbreak on a wild gorilla population

scientific article published on 11 October 2021

The genetic origins of the Andaman Islanders

scientific article

The genetic prehistory of the New World Arctic

scientific article

The genome sequence of the grey wolf, Linnaeus 1758

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

scientific article (publication date: 7 December 2012)

The isolation of nucleic acids from fixed, paraffin-embedded tissues-which methods are useful when?

scientific article

The limits and potential of paleogenomic techniques for reconstructing grapevine domestication

The microbiome of New World vultures

scientific article

The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)

scientific article published in February 2009

The mummy returns… and sheds new light on old questions

scientific article

The origin and emergence of an HIV-1 epidemic: from introduction to endemicity

scientific article published on April 2014

The origin and evolution of maize in the American Southwest

The origin and evolution of maize in the Southwestern United States

scientific article

The population genomic basis of geographic differentiation in North American common ragweed (Ambrosia artemisiifolia L.). ⬇️

scientific article

The potential and pitfalls of de-extinction

scientific article published in 2016

The potential of aquatic bloodfeeding and nonbloodfeeding leeches as a tool for iDNA characterisation

scientific article published in 2022

The potential of aquatic haematophagous, liquidosomatophagous and macrophagous leeches as a tool for iDNA characterisation

The survival of PCR-amplifiable DNA in cow leather

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing

scientific article

The wolf reference genome sequence (Canis lupus lupus) and its implications for Canis spp. population genomics

scientific article

To bee, or not to bee? One leg is the question

scientific article published in 2022

Tracing the phylogeography of human populations in Britain based on 4th-11th century mtDNA genotypes

scientific article

Tracking down human contamination in ancient human teeth

scientific article published on 29 June 2006

Tracking niche variation over millennial timescales in sympatric killer whale lineages

scientific article (publication date: 7 October 2013)

Transcriptomes of the desiccation-tolerant resurrection plant Craterostigma plantagineum

scientific article published on 29 April 2010

Travel Tales of a Worldwide Weed: Genomic Signatures of L. Reveal Distinct Genotypic Groups With Links to Colonial Trade Routes

scientific article published in 2022

True single-molecule DNA sequencing of a pleistocene horse bone

scientific article (publication date: October 2011)

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

scientific article

Uncovering the genomic basis of an extraordinary plant invasion

scientific article published in 2022

Unravelling migrations in the steppe: mitochondrial DNA sequences from ancient central Asians

scientific article

Using DNA metabarcoding for simultaneous inference of common vampire bat diet and population structure.

scientific article published on 19 April 2018

Using in silico predicted ancestral genomes to improve the efficiency of paleogenome reconstruction

scientific article published on 28 October 2020

Using metabarcoding to compare the suitability of two blood-feeding leech species for sampling mammalian diversity in North Borneo

scientific article published on 16 October 2018

Using paleo-archives to safeguard biodiversity under climate change

scientific article

Validation of a sensitive PCR assay for the detection of Chelonid fibropapilloma-associated herpesvirus in latent turtle infections

scientific article

Viral meningitis epidemics and a single, recent, recombinant and anthroponotic origin of swine vesicular disease virus

scientific article published on 27 October 2015

Was the Black Death caused by Yersinia pestis?

scientific article published on February 2004

When bugs reveal biodiversity ⬇️

scientific article published on February 1, 2013

Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds

scientific article

Whole-Genome Sequencing of African Dogs Provides Insights into Adaptations against Tropical Parasites

scientific article

Whole-genome analyses resolve early branches in the tree of life of modern birds

scientific article

Whole-genome shotgun sequencing of mitochondria from ancient hair shafts

scientific article

Yersinia pestis: one pandemic, two pandemics, three pandemics, more?

scientific article

eDNA‐based biomonitoring at an experimental German vineyard to characterize how management regimes shape ecosystem diversity

scientific article published in 2020

hilldiv: an R package for the integral analysis of diversity based on Hill numbers

iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool - prospects, pitfalls and avenues to be developed

scientific article

mapDamage: testing for damage patterns in ancient DNA sequences

scientific article

mtDNA analysis of human remains from an early Danish Christian cemetery

scientific article (publication date: October 2005)

mtDNA from hair and nail clarifies the genetic relationship of the 15th century Qilakitsoq Inuit mummies

scientific article

‘The Farm Beneath the Sand’ – an archaeological case study on ancient ‘dirt’ DNA

scholarly article by Martin B. Hebsgaard published in June 2009

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