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List of works by Joshua Levin

A comprehensive fitness landscape model reveals the evolutionary history and future evolvability of eukaryotic cis-regulatory DNA sequences

scientific article

A gene encoding an RNase D exonuclease-like protein is required for post-transcriptional silencing in Arabidopsis

scientific article published on 01 August 2003

A genetic screen for modifiers of UFO meristem activity identifies three novel FUSED FLORAL ORGANS genes required for early flower development in Arabidopsis.

scientific article

Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

scientific article (publication date: May 2010)

Arabidopsis genes essential for seedling viability: isolation of insertional mutants and molecular cloning.

scientific article

Arabidopsis hapless mutations define essential gametophytic functions.

scientific article

Author Correction: Comprehensive comparative analysis of 5'-end RNA-sequencing methods

scientific article published on 01 December 2018

Author Correction: Systematic comparison of single-cell and single-nucleus RNA-sequencing methods

scientific article published on 27 April 2020

Benchmarking single-cell RNA-sequencing protocols for cell atlas projects

scientific article published on 06 April 2020

Chemoproteomic discovery of cysteine-containing human short open reading frames.

scientific article published on 25 October 2013

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

scientific article

Comparative functional genomics of the fission yeasts

scientific article

Complete viral RNA genome sequencing of ultra-low copy samples by sequence-independent amplification ⬇️

scientific article published on September 8, 2012

Distinct subnetworks of the thalamic reticular nucleus

scientific article published on 22 July 2020

Effects of 3D culturing conditions on the transcriptomic profile of stem-cell-derived neurons

article

Expression of herpes simplex virus type 1 glycoprotein D deletion mutants in mammalian cells

scientific article published on June 1988

Full-length transcriptome assembly from RNA-Seq data without a reference genome

scientific article

Genome Sequences of Three Phytopathogenic Species of the Magnaporthaceae Family of Fungi.

scientific article

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

scientific article published on 22 February 2016

Highly Sensitive and Specific Detection of Rare Variants in Mixed Viral Populations from Massively Parallel Sequence Data ⬇️

scientific article published on March 15, 2012

In vivo Perturb-Seq reveals neuronal and glial abnormalities associated with autism risk genes

scientific article published on 01 November 2020

Individual brain organoids reproducibly form cell diversity of the human cerebral cortex

scientific article published on 05 June 2019

Insertional Mutagenesis of Genes Required for Seed Development in Arabidopsis thaliana ⬇️

scientific article published on December 1, 2001

Knock-out of the genes coding for the Rieske protein and the ATP-synthase delta-subunit of Arabidopsis. Effects on photosynthesis, thylakoid protein composition, and nuclear chloroplast gene expression.

scientific article published in September 2003

Metabolic labeling of RNA uncovers principles of RNA production and degradation dynamics in mammalian cells

scientific article

Methods of double-stranded RNA-mediated gene inactivation in Arabidopsis and their use to define an essential gene in methionine biosynthesis

scientific article published on 01 December 2000

Microsporidian genome analysis reveals evolutionary strategies for obligate intracellular growth.

scientific article

Peptidomic discovery of short open reading frame-encoded peptides in human cells.

scientific article

Proper acquisition of cell class identity in organoids allows definition of fate specification programs of the human cerebral cortex

scientific article published in 2022

RIPK1 mediates a disease-associated microglial response in Alzheimer's disease

scientific article published on 13 September 2017

Single-cell transcriptomic profiling of the aging mouse brain

scientific article published on 24 September 2019

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

scientific article (publication date: 13 June 2013)

Systematic comparison of single-cell and single-nucleus RNA-sequencing methods

scientific article published on 06 April 2020

TBK1 Suppresses RIPK1-Driven Apoptosis and Inflammation during Development and in Aging

scientific article published on 23 August 2018

The African coelacanth genome provides insights into tetrapod evolution

scientific article

The CLAVATA and SHOOT MERISTEMLESS loci competitively regulate meristem activity in Arabidopsis.

scientific article

The Caenorhabditis elegans unc-93 gene encodes a putative transmembrane protein that regulates muscle contraction.

scientific article

Three new classes of mutations in the Caenorhabditis elegans muscle gene sup-9.

scientific article published on September 1993

Tic40, a membrane-anchored co-chaperone homolog in the chloroplast protein translocon

scientific article

sup-9, sup-10, and unc-93 may encode components of a two-pore K+ channel that coordinates muscle contraction in Caenorhabditis elegans.

scientific article published in October 2003

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