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List of works by Christophe Zimmer

A Dual Protein-mRNA Localization Screen Reveals Compartmentalized Translation and Widespread Co-translational RNA Targeting

scientific article published on 04 August 2020

A Predictive Computational Model of the Dynamic 3D Interphase Yeast Nucleus

article

A computational framework to study sub-cellular RNA localization

scientific article published in Nature Communications

A single-molecule view of transcription reveals convoys of RNA polymerases and multi-scale bursting

scientific article

Chromatin mobility upon DNA damage: state of the art and remaining questions

article

Chromatin organization at the nuclear pore favours HIV replication

scientific article

Chromatin stiffening underlies enhanced locus mobility after DNA damage in budding yeast

scientific article published on 10 July 2017

Chromosome arm length and nuclear constraints determine the dynamic relationship of yeast subtelomeres

scientific article

Clustering and reverse transcription of HIV-1 genomes in nuclear niches of macrophages

scientific article published on 03 December 2020

Deep learning massively accelerates super-resolution localization microscopy

scientific article published on 16 April 2018

Effect of nuclear architecture on the efficiency of double-strand break repair

scientific article

EhPAK, a member of the p21-activated kinase family, is involved in the control of Entamoeba histolytica migration and phagocytosis

scientific article published on 01 January 2003

Evidence for a dual role of actin in regulating chromosome organization and dynamics in yeast

scientific article published on 13 January 2016

FISH-quant v2: a scalable and modular tool for smFISH image analysis

scientific article published on 28 March 2022

FISH-quant: automatic counting of transcripts in 3D FISH images

scientific article published on 01 April 2013

Filling annotation gaps in yeast genomes using genome-wide contact maps

scientific article

FlAsH-PALM: super-resolution pointillist imaging with FlAsH-tetracysteine labeling

scientific article

From dynamic chromatin architecture to DNA damage repair and back.

scientific article published on 22 December 2017

Functional organization of cytoplasmic inclusion bodies in cells infected by respiratory syncytial virus

scientific article published on 15 September 2017

Hierarchies of host factor dynamics at the entry site of Shigella flexneri during host cell invasion

scientific article

High-quality genome (re)assembly using chromosomal contact data

scientific article

High-resolution statistical mapping reveals gene territories in live yeast

scientific article published on 2 November 2008

How to build a yeast nucleus.

scientific article published on 22 August 2013

Human tumor necrosis factor is a chemoattractant for the parasite Entamoeba histolytica

scientific article published on February 2006

ImJoy: an open-source computational platform for the deep learning era

scientific article published on 01 December 2019

Imaging movement of malaria parasites during transmission by Anopheles mosquitoes.

scientific article published in July 2004

Inferring the physical properties of yeast chromatin through Bayesian analysis of whole nucleus simulations.

scientific article published on 3 May 2017

Membrane-cytoskeleton interactions during the formation of the immunological synapse and subsequent T-cell activation

scientific article

Molecular organization and mechanics of single vimentin filaments revealed by super-resolution imaging

scientific article published on 25 February 2022

Myosin II and the Gal-GalNAc lectin play a crucial role in tissue invasion by Entamoeba histolytica

scientific article published in January 2005

Principles of chromosomal organization: lessons from yeast

scientific article

QuickPALM: 3D real-time photoactivation nanoscopy image processing in ImageJ

scientific article

Regulated vesicle fusion generates signaling nanoterritories that control T cell activation at the immunological synapse.

scientific article

Richardson-Lucy algorithm with total variation regularization for 3D confocal microscope deconvolution

scientific article

SAGA interacting factors confine sub-diffusion of transcribed genes to the nuclear envelope

scientific article

Segmentation and tracking of migrating cells in videomicroscopy with parametric active contours: a tool for cell-based drug testing

scientific article published in October 2002

Segmenting and tracking fluorescent cells in dynamic 3-D microscopy with coupled active surfaces.

scientific article published in September 2005

Sensitive visualization of SARS-CoV-2 RNA with CoronaFISH

scientific article

Sensitive visualization of SARS-CoV-2 RNA with CoronaFISH

Single-molecule localization super-resolution microscopy: deeper and faster.

scientific article

Super-resolution dynamic imaging of dendritic spines using a low-affinity photoconvertible actin probe

scientific article

Super-resolution visualization and modeling of human chromosomal regions reveals cohesin-dependent loop structures

scientific article published on 11 May 2021

Superresolution imaging of HIV in infected cells with FlAsH-PALM

scientific article

Systematic characterization of the conformation and dynamics of budding yeast chromosome XII.

scientific article

Transcription factors modulate c-Fos transcriptional bursts

scientific article

Visualization of arenavirus RNA species in individual cells by single-molecule fluorescence in situ hybridization (smFISH) suggests a model of cyclical infection and clearance during persistence.

scientific article published on 11 April 2018

ZOLA-3D allows flexible 3D localization microscopy over an adjustable axial range.

scientific article

instaGRAAL: chromosome-level quality scaffolding of genomes using a proximity ligation-based scaffolder

scientific article published on 18 June 2020

smiFISH and FISH-quant - a flexible single RNA detection approach with super-resolution capability

scientific article

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