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List of works by Judy H. Cho

A Frameshift in CSF2RB Predominant Among Ashkenazi Jews Increases Risk for Crohn's Disease and Reduces Monocyte Signaling via GM-CSF.

scientific article published on July 2016

A Genome Scan in 260 Inflammatory Bowel Disease-Affected Relative Pairs

scientific article published on 01 January 2004

A Genome Scan in 260 Inflammatory Bowel Disease-Affected Relative Pairs

scientific article published on 01 September 2004

A New Approach for the Joint Analysis of Multiple Chip-Seq Libraries with Application to Histone Modification ⬇️

scientific article published on February 10, 2012

A Pleiotropic Missense Variant in SLC39A8 Is Associated With Crohn's Disease and Human Gut Microbiome Composition

scientific article

A brief history of human disease genetics

scientific article published on 08 January 2020

A common variant in PNPLA3 is associated with age at diagnosis of NAFLD in patients from a multi-ethnic biobank

scientific article published on 05 March 2020

A frameshift mutation in NOD2 associated with susceptibility to Crohn's disease

scientific article

A genome-wide association study identifies IL23R as an inflammatory bowel disease gene

scientific article

A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci

scientific journal article

A model for harmonizing flow cytometry in clinical trials

scientific article

A myeloid-stromal niche and gp130 rescue in NOD2-driven Crohn's disease

scientific article published on 31 March 2021

A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis

scientific article published on 09 August 2016

Acute Kidney Injury in Hospitalized Patients with COVID-19

scientific article published on 08 May 2020

Age and CD161 Expression Contribute to Inter-Individual Variation in Interleukin-23 Response in CD8+ Memory Human T Cells ⬇️

scientific article published on January 1, 2013

Analysis of keratin polypeptides 8 and 19 variants in inflammatory bowel disease.

scientific article published on 16 May 2007

Appendectomy does not decrease the risk of future colectomy in UC: results from a large cohort and meta-analysis

scientific article published on 13 April 2016

Assessment of DNA methylation at the interferon regulatory factor 5 (IRF5) promoter region in inflammatory bowel diseases ⬇️

scientific article published on 2 February 2010

Assessment of reliability and validity of IBD phenotyping within the National Institutes of Diabetes and Digestive and Kidney Diseases (NIDDK) IBD Genetics Consortium (IBDGC)

article

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations

scientific article published on 20 July 2015

Association of the V122I Hereditary Transthyretin Amyloidosis Genetic Variant With Heart Failure Among Individuals of African or Hispanic/Latino Ancestry

scientific article published on 01 December 2019

Augmented Intelligence with Natural Language Processing Applied to Electronic Health Records is Useful for Identifying Patients with Non-Alcoholic Fatty Liver Disease at Risk for Disease Progression

article

Blood and Intestine eQTLs from an Anti-TNF-Resistant Crohn's Disease Cohort Inform IBD Genetic Association Loci

scientific article published on 23 June 2016

Blood-Derived DNA Methylation Signatures of Crohn's Disease and Severity of Intestinal Inflammation

scientific article published on 16 February 2019

Bridging the gap between host immune response and intestinal dysbiosis in inflammatory bowel disease: does immunoglobulin A mark the spot?

scientific article published on 25 February 2015

Bugging of the intestinal mucosa

scientific article published in August 2007

COLLAGENOUS COLITIS IS ASSOCIATED WITH HLA SIGNATURE AND SHARES GENETIC RISKS WITH OTHER IMMUNE-MEDIATED DISEASES

scientific article published on 01 May 2020

Challenges in IBD Research: Precision Medicine

scientific article published on 01 May 2019

Characterization of genetic loci that affect susceptibility to inflammatory bowel diseases in African Americans

scientific article

Chronic stimulation of Nod2 mediates tolerance to bacterial products

scholarly article

Common and rare variant prediction and penetrance of IBD in a large, multi-ethnic, health system-based biobank cohort

scientific article published on 24 December 2020

Common variants at five new loci associated with early-onset inflammatory bowel disease

scientific article

Comparisons of multi-marker association methods to detect association between a candidate region and disease

scientific article

Contribution of higher risk genes and European admixture to Crohn's disease in African Americans

scientific article published on 12 March 2012

Correction: Insights into the genetic epidemiology of Crohn's and rare diseases in the Ashkenazi Jewish population

correction of a scientific article; published on 30 May 2019

Crohn's disease-associated NOD2 variants share a signaling defect in response to lipopolysaccharide and peptidoglycan

scientific article published on January 2003

Deep resequencing of GWAS loci identifies independent rare variants associated with inflammatory bowel disease

scientific article

Deep resequencing of GWAS loci identifies rare variants in CARD9, IL23R and RNF186 that are associated with ulcerative colitis

scientific article

Defects in NADPH Oxidase Genes NOX1 and DUOX2 in Very Early Onset Inflammatory Bowel Disease

scientific article

Defining complex contributions of NOD2/CARD15 gene mutations, age at onset, and tobacco use on Crohn's disease phenotypes

scientific article published on 01 September 2003

Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease

scientific article published on September 2008

Dense genotyping of immune-related disease regions identifies nine new risk loci for primary sclerosing cholangitis.

scientific article

Detecting Identity by Descent and Homozygosity Mapping in Whole-Exome Sequencing Data ⬇️

scientific article published on October 11, 2012

Different tissue phagocytes sample apoptotic cells to direct distinct homeostasis programs.

scientific article published on 9 November 2016

Dominant-negative TLR5 polymorphism reduces adaptive immune response to flagellin and negatively associates with Crohn's disease

article

Dysregulated LIGHT expression on T cells mediates intestinal inflammation and contributes to IgA nephropathy

scientific article published on March 2004

Earlier Anti-Tumor Necrosis Factor Therapy of Crohn's Disease Correlates with Slower Progression of Bowel Damage

scientific article published on 03 January 2019

Effector CD4+ T cell expression signatures and immune-mediated disease associated genes

scientific article

Emergent colectomy rates decreased while elective ileal pouch rates were stable over time: a nationwide inpatient sample study

scientific article published on 11 September 2019

Empirical Bayes Correction for the Winner's Curse in Genetic Association Studies ⬇️

scientific article published on September 25, 2012

Erratum: A protein-truncating R179X variant in RNF186 confers protection against ulcerative colitis

scientific article published on 13 September 2016

Erratum: Corrigendum: Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47

scholarly article published in Nature Genetics

Erratum: Corrigendum: Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study

scholarly article published in Nature Genetics

Erratum: Genome-wide association identifies multiple ulcerative colitis susceptibility loci

scholarly article published in Nature Genetics

Evaluation of ileal Crohn's disease response to TNF antagonists: Validation of MR enterography for assessing response. Initial results

scientific article published on 28 January 2020

Evidence for an inflammatory bowel disease locus on chromosome 3p26: linkage, transmission/disequilibrium and partitioning of linkage

article

Exome sequencing reveals a high prevalence of BRCA1 and BRCA2 founder variants in a diverse population-based biobank

scientific article published on 31 December 2019

Expanded genetic screening panel for the Ashkenazi Jewish population.

scientific article published on 3 September 2015

Finding the missing heritability of complex diseases

scientific article

Fine-mapping inflammatory bowel disease loci to single-variant resolution

scientific article

Functional annotation of a novel NFKB1 promoter polymorphism that increases risk for ulcerative colitis

scientific article

Functional consequences of NOD2 (CARD15) mutations

scientific article published on July 2006

Functional variants in the LRRK2 gene confer shared effects on risk for Crohn's disease and Parkinson's disease

scientific article published in January 2018

Genetic Predictors of Benign Course of Ulcerative Colitis-A North American Inflammatory Bowel Disease Genetics Consortium Study

scientific article

Genetic identification of a common collagen disease in puerto ricans via identity-by-descent mapping in a health system.

scientific article published on 12 September 2017

Genetics of Inflammatory Bowel Diseases

scientific article published on 06 August 2015

Genome-Wide Association Study Identifies African-Specific Susceptibility Loci in African Americans With Inflammatory Bowel Disease.

scientific article published on 28 September 2016

Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease

scientific article

Genome-wide association identifies multiple ulcerative colitis susceptibility loci

scientific article

Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis

scientific article

Genome-wide association study of N370S homozygous Gaucher disease reveals the candidacy of CLN8 gene as a genetic modifier contributing to extreme phenotypic variation

scientific journal article

Genome-wide meta-analysis increases to 71 the number of confirmed Crohn's disease susceptibility loci

scientific article

Genomics and the multifactorial nature of human autoimmune disease

scientific article published on October 2011

Granulocyte-macrophage colony-stimulating factor autoantibodies: a marker of aggressive Crohn's disease

scientific article published on July 2013

Gut microbiota density influences host physiology and is shaped by host and microbial factors

scientific article published on 22 January 2019

High-Throughput Characterization of Blood Serum Proteomics of IBD Patients with Respect to Aging and Genetic Factors.

scientific article

High-Throughput Identification of the Plasma Proteomic Signature of Inflammatory Bowel Disease

scientific article published on 01 March 2019

High-depth whole genome sequencing of a large population-specific reference panel: Enhancing sensitivity, accuracy, and imputation

High-depth whole genome sequencing of an Ashkenazi Jewish reference panel: enhancing sensitivity, accuracy, and imputation.

scientific article published on 28 April 2018

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease

scientific article

IL-23 and autoimmunity: new insights into the pathogenesis of inflammatory bowel disease

scientific article published on January 2009

Identification of association between disease and multiple markers via sparse partial least-squares regression ⬇️

scientific article published on June 15, 2011

Immunoglobulin A Targets a Unique Subset of the Microbiota in Inflammatory Bowel Disease

scientific article published on 31 December 2020

Immunoglobulin A coating identifies colitogenic bacteria in inflammatory bowel disease

scientific article

Improved integrative framework combining association data with gene expression features to prioritize Crohn's disease genes

scientific article

Improved risk prediction for Crohn's disease with a multi-locus approach ⬇️

scientific article published on March 22, 2011

Inducing intestinal growth

scientific article

Inflammatory bowel disease characteristics among African Americans, Hispanics, and non-Hispanic Whites: characterization of a large North American cohort

scientific article (publication date: May 2006)

Inflammatory bowel disease genetics: Nod2.

scientific article published on January 2007

Inherited determinants of Crohn's disease and ulcerative colitis phenotypes: a genetic association study

scientific article

Insights into the genetic epidemiology of Crohn's and rare diseases in the Ashkenazi Jewish population

preprint published 25 September 2016

Insights into the genetic epidemiology of Crohn's and rare diseases in the Ashkenazi Jewish population.

scientific article

Institutional profile: translational pharmacogenomics at the Icahn School of Medicine at Mount Sinai

scientific article

Interleukin-23/Th17 pathways and inflammatory bowel disease

scientific article published on July 2009

Intestinal inflammation modulates the expression of ACE2 and TMPRSS2 and potentially overlaps with the pathogenesis of SARS-CoV-2 related disease

scientific article published on 24 September 2020

Limitations of Contemporary Guidelines for Managing Patients at High Genetic Risk of Coronary Artery Disease

scientific article published on 01 June 2020

Luminal narrowing alone allows an accurate diagnosis of Crohn's disease small bowel strictures at cross-sectional imaging

scientific article published on 15 December 2020

Luminally-polarized mural and vascular remodeling in ileal strictures of Crohn's Disease

scientific article published on 16 March 2018

MDR1 Ala893 polymorphism is associated with inflammatory bowel disease

scientific article

Machine Learning to Predict Mortality and Critical Events in COVID-19 Positive New York City Patients

scientific article published on 28 April 2020

Machine Learning to Predict Mortality and Critical Events in COVID-19 Positive New York City Patients: A Cohort Study

scientific article published on 02 October 2020

Machine learning identifies novel blood protein predictors of penetrating and stricturing complications in newly diagnosed paediatric Crohn's disease

scientific article published on 01 November 2020

Magnetic resonance imaging predicts histopathologic composition of ileal Crohn's disease

scientific article published on 2 January 2018

Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47

scientific journal article

Microbial Engraftment and Efficacy of Fecal Microbiota Transplant for Clostridium Difficile in Patients With and Without Inflammatory Bowel Disease

scientific article published on 01 May 2019

NADPH oxidase complex and IBD candidate gene studies: identification of a rare variant in NCF2 that results in reduced binding to RAC2

scientific article (publication date: July 2012)

Natural language processing of electronic health records is superior to billing codes to identify symptom burden in hemodialysis patients

journal article published in 2020

Ocular Manifestations in Inflammatory Bowel Disease Are Associated with Other Extra-intestinal Manifestations, Gender, and Genes Implicated in Other Immune-related Traits.

scientific article published on 8 October 2015

Pathway analysis comparison using Crohn's disease genome wide association studies

scientific article

Pattern recognition receptor signaling in human dendritic cells is enhanced by ICOS ligand and modulated by the Crohn's disease ICOSLG risk allele.

scientific article

Pervasive sharing of genetic effects in autoimmune disease

scientific article

Phenotype-stratified genetic linkage study demonstrates that IBD2 is an extensive ulcerative colitis locus

scientific article

Phenotypic and genotypic characteristics of inflammatory bowel disease in French Canadians: comparison with a large North American repository

scientific article published on 09 June 2009

Practical issues in building risk-predicting models for complex diseases

scientific article published on March 2010

Prediction of complicated disease course for children newly diagnosed with Crohn's disease: a multicentre inception cohort study

scientific article published on March 2017

Predictors of Hospital Readmissions for Ulcerative Colitis in the United States: A National Database Study.

scientific article

Prevalence of CARD15/NOD2 mutations in Caucasian healthy people

scientific article

Prioritizing Crohn's disease genes by integrating association signals with gene expression implicates monocyte subsets.

scientific article published on 29 January 2019

Recent Insights Into the Genetics of Inflammatory Bowel Disease ⬇️

scientific article published on May 1, 2011

Refined genomic localization and ethnic differences observed for the IBD5 association with Crohn's disease

article

Regulation of IL-8 and IL-1beta expression in Crohn's disease associated NOD2/CARD15 mutations

scientific article

Relationship between proximal Crohn's disease location and disease behavior and surgery: a cross-sectional study of the IBD Genetics Consortium

scientific article

SUN-032 Exome Sequencing Reveals that Pathogenic RET Variants Occur at Higher Prevalence Than Previously Recognized: Data from a US Health System Biobank.

scientific article

Sequencing an Ashkenazi reference panel supports population-targeted personal genomics and illuminates Jewish and European origins

scientific article

Single nucleotide polymorphisms that increase expression of the guanosine triphosphatase RAC1 are associated with ulcerative colitis

scientific article published on 4 May 2011

Single-Cell Analysis of Crohn's Disease Lesions Identifies a Pathogenic Cellular Module Associated with Resistance to Anti-TNF Therapy

scientific article published on 29 August 2019

Smoking and inflammatory bowel disease

scientific article published on 01 May 2007

Su1921 - Clinical and Pathological Correlations Between Primary and Secondary Ileal Strictures in Crohns Disease

Su1936 - Hypertrophic and Constrictive Ileal Strictures in Crohn's Disease: A Histologic, Morphometric and Clinical Study

The IBD International Genetics Consortium Provides Further Evidence for Linkage to IBD4 and Shows Gene-Environment Interaction

article

The Influence of Depression on Quality of Life in Patients with Inflammatory Bowel Disease ⬇️

scientific article published on July 1, 2013

The genetics of inflammatory bowel disease

scientific article published on 01 February 2003

Transcriptional risk scores link GWAS to eQTLs and predict complications in Crohn's disease

scientific article published on 14 August 2017

Transethnic Transferability of a Genome-wide Polygenic Score for Coronary Artery Disease

scientific article published on 07 December 2020

Ulcerative colitis and ex-smoking: The later the diagnosis, the greater the burden

scholarly article by Jeffrey A. Tuvlin et al published April 2003 in Gastroenterology

Ulcerative colitis-risk loci on chromosomes 1p36 and 12q15 found by genome-wide association study

scientific article

Update on genetics of inflammatory bowel disease

scientific article published on 01 July 2002

Very Early Onset Inflammatory Bowel Disease: A Clinical Approach With a Focus on the Role of Genetics and Underlying Immune Deficiencies

scientific article published on 03 December 2019

Whole-exome Sequence Analysis Implicates Rare Il17REL Variants in Familial and Sporadic Inflammatory Bowel Disease.

scientific article

Zebrafish modeling of intestinal injury, bacterial exposures and medications defines epithelial in vivo responses relevant to human inflammatory bowel disease

scientific article published on 13 August 2019

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