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List of works by Ichizo Kobayashi

A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex.

scientific article

A Novel Approach to Helicobacter pylori Pan-Genome Analysis for Identification of Genomic Islands.

scientific article

A new type of illegitimate recombination is dependent on restriction and homologous interaction.

scientific article published on September 1997

A novel, 11 nucleotide variant of chi, chi*: one of a class of sequences defining the Escherichia coli recombination hotspot chi.

scientific article published on July 2000

A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI)

scientific article

A reaction-diffusion model for interference in meiotic crossing over.

scientific article published on May 2002

A sequence-specific DNA glycosylase mediates restriction-modification in Pyrococcus abyssi

scientific article published on 01 January 2014

Accumulation of large non-circular forms of the chromosome in recombination-defective mutants of Escherichia coli ⬇️

scientific article published on April 28, 2003

Activation of Chi, a recombinator, by the action of an endonuclease at a distant site.

scientific article published on April 1983

Alterations in rRNA-mRNA interaction during plastid evolution

scientific article

An Escherichia coli strain, BJ5183, that shows highly efficient conservative (two-progeny) DNA double-strand break repair of restriction breaks.

scientific article published in January 2003

Antisense RNA associated with biological regulation of a restriction–modification system ⬇️

scientific article published on March 31, 2011

Asymmetric random walk in a reaction intermediate of homologous recombination

scientific article published on 01 February 2003

Birth and death of genes linked to chromosomal inversion.

scientific article

Cell-free protein synthesis for structure determination by X-ray crystallography.

scientific article published in January 2010

Chi-stimulated recombination between phage lambda and the plasmid lambda dv.

scientific article

Cleavage of a model DNA replication fork by a Type I restriction endonuclease.

scientific article

Cleavage of a model DNA replication fork by a methyl-specific endonuclease.

scientific article published on 26 March 2011

Clustering of chi sequence in Escherichia coli genome.

scientific article

Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction-modification genes with large genome polymorphisms

scientific article published on 01 December 2000

Conflicts targeting epigenetic systems and their resolution by cell death: novel concepts for methyl-specific and other restriction systems

scientific article

Contribution of RecFOR machinery of homologous recombination to cell survival after loss of a restriction-modification gene complex.

scientific article published on 23 April 2009

Corrigendum: Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori

scientific article published on 22 September 2020

Coupling with packaging explains apparent nonreciprocality of Chi-stimulated recombination of bacteriophage lambda by RecA and RecBC functions ⬇️

scientific article published on December 1, 1984

Dependence of frequency of homologous recombination on the homology length.

scientific article

Distance from cohesive end site cos determines the replication requirement for recombination in phage lambda.

scientific article

Domain movement within a gene: a novel evolutionary mechanism for protein diversification.

scientific article

Double holliday structure: A possible in vivo intermediate form of general recombination in Escherichia coli ⬇️

scientific article published on January 1, 1983

Double-stranded gap repair of DNA by gene conversion in Escherichia coli

scientific article

Effects of chemical animalization and cell dissociation on RNA synthesis in sea urchin embryos

scientific article published on February 1, 1976

Evidence for conservative (two-progeny) DNA double-strand break repair.

scientific article published on January 1995

Evidence for the double-strand break repair model of bacteriophage lambda recombination.

scientific article published on April 1990

Evolution of DNA double-strand break repair by gene conversion: coevolution between a phage and a restriction-modification system

scientific article published on 3 April 2007

Evolution of paralogous genes: Reconstruction of genome rearrangements through comparison of multiple genomes within Staphylococcus aureus

scientific article published on 06 April 2006

Evolution of sequence recognition by restriction-modification enzymes: selective pressure for specificity decrease

scientific article published on 01 November 2000

Evolutionary genome engineering using a restriction–modification system ⬇️

scientific article published on July 23, 2011

Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer.

scientific article

Experimental genome evolution: large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex

scientific article published on 01 May 2001

Formation of recombinant DNA of bacteriophage lambda by recA function of Escherichia coli without duplication, transcription, translation, and maturation ⬇️

scientific article published on June 24, 1977

From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction-modification gene complex.

scientific article published on 20 March 2009

Genetic addiction: selfish gene's strategy for symbiosis in the genome

scientific article

Genetic analysis of double-strand break repair in Escherichia coli

scientific article

Genetic recombination through double-strand break repair: shift from two-progeny mode to one-progeny mode by heterologous inserts.

scientific article

Genome comparison in silico in Neisseria suggests integration of filamentous bacteriophages by their own transposase

scientific article published on 01 January 2005

Genome-wide survey of codons under diversifying selection in a highly recombining bacterial species, Helicobacter pylori

scientific article published on 8 March 2016

Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species

scientific article

Homologous recombination and sex as a strategy against selfish genes attacking the genome

scientific article published on 01 May 1999

Homologous recombination in a mammalian plasmid.

scientific article

Homology-associated nonhomologous recombination in mammalian gene targeting.

scientific article published on August 1994

How genomes rearrange: genome comparison within bacteria Neisseria suggests roles for mobile elements in formation of complex genome polymorphisms.

scientific article published on 28 July 2006

IS-linked movement of a restriction-modification system.

scientific article

Identification in Methicillin-Susceptible Staphylococcus hominis of an Active Primordial Mobile Genetic Element for the Staphylococcal Cassette Chromosome mec of Methicillin-Resistant Staphylococcus aureus ⬇️

scientific article published on May 1, 2003

Improved in vitro packaging of coliphage lambda DNA: a one-strain system free from endogenous phage

scientific article published on 01 January 1985

In phage lambda, cos is a recombinator in the red pathway

scientific article published on 01 January 1985

Insertion with long target duplication: a mechanism for gene mobility suggested from comparison of two related bacterial genomes

scientific article published on 01 December 2000

Involvement of DNA-dependent RNA polymerase in a recA-independent pathway of genetic recombination in Escheria coli ⬇️

scientific article published on September 1, 1977

Involvement of RecE exonuclease and RecT annealing protein in DNA double-strand break repair by homologous recombination.

scientific article

Large variations in bacterial ribosomal RNA genes.

scientific article

Methylome diversification through changes in DNA methyltransferase sequence specificity.

scientific article

Microevolution of Virulence-Related Genes in Helicobacter pylori Familial Infection

scientific article published on 15 May 2015

Mismatch-stimulated destruction of intermediates as an explanation for map expansion in genetic recombination

scientific article published on 01 December 1997

Molecular determinants responsible for recognition of the single-stranded DNA regulatory sequence, χ, by RecBCD enzyme

scientific article

Movement of DNA sequence recognition domains between non-orthologous proteins.

scientific article

Multiplication of a restriction-modification gene complex.

scientific article

Negative regulation of the EcoRI restriction enzyme gene is associated with intragenic reverse promoters

scientific article

Networking and Specificity-Changing DNA Methyltransferases in Helicobacter pylori

scientific article published on 17 July 2020

Nonconservative recombination in Escherichia coli.

scientific article published on July 1992

Novel protein fold discovered in the PabI family of restriction enzymes

scientific article published in 2007

On the role of recA gene product in genetic recombination: An analysis by in vitro packaging of recombinant DNA molecules formed in the absence of protein synthesis ⬇️

scientific article published on October 25, 1978

Orientation of cohesive end site cos determines the active orientation of chi sequence in stimulating recA . recBC-mediated recombination in phage lambda lytic infections ⬇️

scientific article published on October 1, 1982

Population Evolution of Helicobacter pylori through Diversification in DNA Methylation and Interstrain Sequence Homogenization.

scientific article published on 7 September 2016

Post-segregational killing by restriction modification gene complexes: observations of individual cell deaths

scientific article published on 01 August 1999

Random-walk mechanism in the genetic recombination.

scientific article published on January 2010

Random-walk model of homologous recombination

scientific article published on 01 December 1995

Regulation of the EcoRI restriction-modification system: Identification of ecoRIM gene promoters and their upstream negative regulators in the ecoRIR gene.

scientific article published on 14 June 2007

Restriction glycosylases: involvement of endonuclease activities in the restriction process

scientific article

Restriction-modification gene complexes as selfish gene entities: Roles of a regulatory system in their establishment, maintenance, and apoptotic mutual exclusion ⬇️

scientific article published on May 26, 1998

Restriction-modification system with methyl-inhibited base excision and abasic-site cleavage activities

scientific article

Restriction-modification systems as genomic parasites in competition for specific sequences

scientific article

Selfish Restriction Modification Genes: Resistance of a Resident R/M Plasmid to Displacement by an Incompatible Plasmid Mediated by Host Killing ⬇️

scientific article published on April 1, 1998

Selfishness and death: raison d'être of restriction, recombination and mitochondria ⬇️

scientific article published on September 1, 1998

Separate sites for binding and nicking of bacteriophage lambda DNA by terminase ⬇️

scientific article published on February 1, 1983

Shaping the genome--restriction-modification systems as mobile genetic elements.

scientific article

Stability of EcoRI restriction-modification enzymes in vivo differentiates the EcoRI restriction-modification system from other postsegregational cell killing systems.

scientific article

Success of a suicidal defense strategy against infection in a structured habitat ⬇️

scientific article published on January 30, 2012

The Landscape of Realized Homologous Recombination in Pathogenic Bacteria.

scientific article published on 29 October 2015

The mechanism of the chi-cos interaction in RecA-RecBC-mediated recombination in phage lambda

scientific article published on 01 January 1984

Transmission of the PabI family of restriction DNA glycosylase genes: mobility and long-term inheritance

scientific article published on 19 October 2015

Type I restriction enzyme with RecA protein promotes illegitimate recombination.

scientific article

recA-Mediated Recombination of Bacteriophage : Structure of Recombinant and Intermediate DNA Molecules and Their Packaging In Vitro ⬇️

scientific article published on January 1, 1979

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