List of works - Xiuqing Zhang

A Comprehensive Analysis of the T and B Lymphocytes Repertoire Shaped by HIV Vaccines

article

A comparison of isolated circulating tumor cells and tissue biopsies using whole-genome sequencing in prostate cancer

scientific article

A comparison of rice chloroplast genomes

scientific article

A draft sequence of the rice (Oryza sativa ssp.indica) genome

A genome sequence of novel SARS-CoV isolates: the genotype, GD-Ins29, leads to a hypothesis of viral transmission in South China.

scientific article published on May 2003

A human gut microbial gene catalogue established by metagenomic sequencing

scientific article

A systematic analysis on DNA methylation and the expression of both mRNA and microRNA in bladder cancer

scientific article

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

scientific article (publication date: 14 August 2014)

An atlas of DNA methylomes in porcine adipose and muscle tissues

scientific article

An improved method for genome wide DNA methylation profiling correlated to transcription and genomic instability in two breast cancer cell lines

scientific article

Aseptic minimum volume vitrification technique for porcine parthenogenetically activated blastocyst

scientific article published on January 1, 2011

Building the sequence map of the human pan-genome

scientific article

Clinical outcome of preimplantation genetic diagnosis and screening using next generation sequencing

scientific article

Clustering of Cancer Cell Lines Using A Promoter- Targeted Liquid Hybridization Capture-Based Bisulfite Sequencing Approach

scientific article published on August 2015

Coexisting genomic aberrations associated with lymph node metastasis in breast cancer

scientific article published on 15 March 2018

Comparative mRNA and microRNA expression profiling of three genitourinary cancers reveals common hallmarks and cancer-specific molecular events

scientific article

Comparison of gene expression and genome-wide DNA methylation profiling between phenotypically normal cloned pigs and conventionally bred controls

scientific article

Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing

scientific article

Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx).

scientific article

Consistent deregulation of gene expression between human and murine MLL rearrangement leukemias

scientific article published on 20 January 2009

Corrigendum: A Comprehensive Analysis of the T and B Lymphocytes Repertoire Shaped by HIV Vaccines

article

DNA copy number aberrations in breast cancer by array comparative genomic hybridization

scientific article published on June 2009

De novo assembly of a haplotype-resolved human genome.

scientific article

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

scientific article

Detecting novel low-abundant transcripts in Drosophila

scientific article

Differential DNA methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis

scientific article

Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells

scientific article published on 7 January 2014

Discovery of biclonal origin and a novel oncogene SLC12A5 in colon cancer by single-cell sequencing

scientific article

Elevated NaCl concentration improves cryotolerance and developmental competence of porcine oocytes

scientific article published on March 2009

Erratum: The sequence and de novo assembly of the giant panda genome

scientific article published in Nature

Excess of rare variants in genes that are key epigenetic regulators of spermatogenesis in the patients with non-obstructive azoospermia

scientific article

Frequent alterations in cytoskeleton remodelling genes in primary and metastatic lung adenocarcinomas

scientific article

Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder

scientific article published on 07 August 2011

Frequent mutations of genes encoding ubiquitin-mediated proteolysis pathway components in clear cell renal cell carcinoma

scientific article

Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells

scientific article

Gene expression profiling in rice young panicle and vegetative organs and identification of panicle-specific genes through known gene functions

scientific article published on 7 October 2005

Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome

scientific article

Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques

scientific article published on 16 October 2011

Genome-wide patterns of genetic variation among elite maize inbred lines

scientific article

Genomic analyses reveal mutational signatures and frequently altered genes in esophageal squamous cell carcinoma

scientific article

Genomic organization, transcript variants and comparative analysis of the human nucleoporin 155 (NUP155) gene

scientific article (publication date: 17 April 2002)

HLA-A gene polymorphism defined by high-resolution sequence-based typing in 161 Northern Chinese Han people

scientific article published on November 2003

Haplotype-assisted accurate non-invasive fetal whole genome recovery through maternal plasma sequencing

scientific article published on 27 February 2013

High hydrostatic pressure treatment of porcine oocytes before handmade cloning improves developmental competence and cryosurvival

scientific article

High-resolution mapping of genotype-phenotype relationships in cri du chat syndrome using array comparative genomic hybridization

scientific article

Identification of genomic alterations in oesophageal squamous cell cancer

scientific article

Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation

scientific article

Integrated profiling of microRNAs and mRNAs: microRNAs located on Xq27.3 associate with clear cell renal cell carcinoma

scientific article

International network of cancer genome projects

scientific article

Molecular signatures of major depression

scientific article

Multilayered molecular profiling supported the monoclonal origin of metastatic renal cell carcinoma

scientific article

Novel Y-chromosomal microdeletions associated with non-obstructive azoospermia uncovered by high throughput sequencing of sequence-tagged sites (STSs).

scientific article published on 24 February 2016

Omics-based profiling of carcinoma of the breast and matched regional lymph node metastasis

article

PSSMHCpan: a novel PSSM-based software for predicting class I peptide-HLA binding affinity

scientific article

Piglets born from vitrified cloned blastocysts produced with a simplified method of delipation and nuclear transfer

scientific article published on January 2007

Preparing a re-sequencing DNA library of 2 cancer candidate genes using the ligation-by-amplification protocol by two PCR reactions

scientific article

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants

SOAPnuke: A MapReduce Acceleration supported Software for integrated Quality Control and Preprocessing of High-Throughput Sequencing Data

scientific article published on 4 December 2017

Sequencing of 50 human exomes reveals adaptation to high altitude

scientific article

Single-cell RNA sequencing reveals dynamic changes in A-to-I RNA editome during early human embryogenesis

scientific article

Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm

scientific article

Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor

scientific article

Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer

scientific article

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

scientific article

The DNA methylome of human peripheral blood mononuclear cells

scientific article

The DNA sequence, annotation and analysis of human chromosome 3

scientific article (publication date: 27 April 2006)

The YH database: the first Asian diploid genome database

scientific article published on January 2009

The diploid genome sequence of an Asian individual

scientific article

The genome of the cucumber, Cucumis sativus L

scientific article

The landscape of somatic mutation in sporadic Chinese colorectal cancer.

scientific article published on 8 June 2018

The sequence and de novo assembly of the giant panda genome

scientific article

WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update.

scientific article published in July 2018

Whole Exome Sequencing Identifies Frequent Somatic Mutations in Cell-Cell Adhesion Genes in Chinese Patients with Lung Squamous Cell Carcinoma

scientific article

Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation

scientific article published on 13 October 2013

List of works by Xiuqing Zhang

A Comprehensive Analysis of the T and B Lymphocytes Repertoire Shaped by HIV Vaccines

A comparison of isolated circulating tumor cells and tissue biopsies using whole-genome sequencing in prostate cancer

A comparison of rice chloroplast genomes

A draft sequence of the rice (Oryza sativa ssp.indica) genome

A genome sequence of novel SARS-CoV isolates: the genotype, GD-Ins29, leads to a hypothesis of viral transmission in South China.

A human gut microbial gene catalogue established by metagenomic sequencing

A systematic analysis on DNA methylation and the expression of both mRNA and microRNA in bladder cancer

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA

An atlas of DNA methylomes in porcine adipose and muscle tissues

An improved method for genome wide DNA methylation profiling correlated to transcription and genomic instability in two breast cancer cell lines

Aseptic minimum volume vitrification technique for porcine parthenogenetically activated blastocyst

Building the sequence map of the human pan-genome

Clinical outcome of preimplantation genetic diagnosis and screening using next generation sequencing

Clustering of Cancer Cell Lines Using A Promoter- Targeted Liquid Hybridization Capture-Based Bisulfite Sequencing Approach

Coexisting genomic aberrations associated with lymph node metastasis in breast cancer

Comparative mRNA and microRNA expression profiling of three genitourinary cancers reveals common hallmarks and cancer-specific molecular events

Comparison of gene expression and genome-wide DNA methylation profiling between phenotypically normal cloned pigs and conventionally bred controls

Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing

Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx).

Consistent deregulation of gene expression between human and murine MLL rearrangement leukemias

Corrigendum: A Comprehensive Analysis of the T and B Lymphocytes Repertoire Shaped by HIV Vaccines

DNA copy number aberrations in breast cancer by array comparative genomic hybridization

De novo assembly of a haplotype-resolved human genome.

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

Detecting novel low-abundant transcripts in Drosophila

Differential DNA methylation in discrete developmental stages of the parasitic nematode Trichinella spiralis

Direct ChIP-bisulfite sequencing reveals a role of H3K27me3 mediating aberrant hypermethylation of promoter CpG islands in cancer cells

Discovery of biclonal origin and a novel oncogene SLC12A5 in colon cancer by single-cell sequencing

Elevated NaCl concentration improves cryotolerance and developmental competence of porcine oocytes

Erratum: The sequence and de novo assembly of the giant panda genome

Excess of rare variants in genes that are key epigenetic regulators of spermatogenesis in the patients with non-obstructive azoospermia

Frequent alterations in cytoskeleton remodelling genes in primary and metastatic lung adenocarcinomas

Frequent mutations of chromatin remodeling genes in transitional cell carcinoma of the bladder

Frequent mutations of genes encoding ubiquitin-mediated proteolysis pathway components in clear cell renal cell carcinoma

Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells

Gene expression profiling in rice young panicle and vegetative organs and identification of panicle-specific genes through known gene functions

Gene identification and expression analysis of 86,136 Expressed Sequence Tags (EST) from the rice genome

Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques

Genome-wide patterns of genetic variation among elite maize inbred lines

Genomic analyses reveal mutational signatures and frequently altered genes in esophageal squamous cell carcinoma

Genomic organization, transcript variants and comparative analysis of the human nucleoporin 155 (NUP155) gene

HLA-A gene polymorphism defined by high-resolution sequence-based typing in 161 Northern Chinese Han people

Haplotype-assisted accurate non-invasive fetal whole genome recovery through maternal plasma sequencing

High hydrostatic pressure treatment of porcine oocytes before handmade cloning improves developmental competence and cryosurvival

High-resolution mapping of genotype-phenotype relationships in cri du chat syndrome using array comparative genomic hybridization

Identification of genomic alterations in oesophageal squamous cell cancer

Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation

Integrated profiling of microRNAs and mRNAs: microRNAs located on Xq27.3 associate with clear cell renal cell carcinoma

International network of cancer genome projects

Molecular signatures of major depression

Multilayered molecular profiling supported the monoclonal origin of metastatic renal cell carcinoma

Novel Y-chromosomal microdeletions associated with non-obstructive azoospermia uncovered by high throughput sequencing of sequence-tagged sites (STSs).

Omics-based profiling of carcinoma of the breast and matched regional lymph node metastasis

PSSMHCpan: a novel PSSM-based software for predicting class I peptide-HLA binding affinity

Piglets born from vitrified cloned blastocysts produced with a simplified method of delipation and nuclear transfer

Preparing a re-sequencing DNA library of 2 cancer candidate genes using the ligation-by-amplification protocol by two PCR reactions

Resequencing of 200 human exomes identifies an excess of low-frequency non-synonymous coding variants

SOAPnuke: A MapReduce Acceleration supported Software for integrated Quality Control and Preprocessing of High-Throughput Sequencing Data

Sequencing of 50 human exomes reveals adaptation to high altitude

Single-cell RNA sequencing reveals dynamic changes in A-to-I RNA editome during early human embryogenesis

Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm

Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor

Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer

Structural variation in two human genomes mapped at single-nucleotide resolution by whole genome de novo assembly

The DNA methylome of human peripheral blood mononuclear cells

The DNA sequence, annotation and analysis of human chromosome 3

The YH database: the first Asian diploid genome database

The diploid genome sequence of an Asian individual

The genome of the cucumber, Cucumis sativus L

The landscape of somatic mutation in sporadic Chinese colorectal cancer.

The sequence and de novo assembly of the giant panda genome

WEGO 2.0: a web tool for analyzing and plotting GO annotations, 2018 update.

Whole Exome Sequencing Identifies Frequent Somatic Mutations in Cell-Cell Adhesion Genes in Chinese Patients with Lung Squamous Cell Carcinoma

Whole-genome and whole-exome sequencing of bladder cancer identifies frequent alterations in genes involved in sister chromatid cohesion and segregation