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List of works by Oliver A. Ryder

A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population

scientific article published in 2022

A High-Quality, Long-Read De Novo Genome Assembly to Aid Conservation of Hawaii's Last Remaining Crow Species

article

A chromosomal inversion unique to the northern white-cheeked gibbon

scientific article

A comprehensive genomic history of extinct and living elephants

scientific article published on 26 February 2018

A draft genome assembly of spotted hyena, Crocuta crocuta

scientific article published on 28 April 2020

A high density SNP array for the domestic horse and extant Perissodactyla: utility for association mapping, genetic diversity, and phylogeny studies

scientific article

A high-resolution, chromosome-assigned Komodo dragon genome reveals adaptations in the cardiovascular, muscular, and chemosensory systems of monitor lizards

scientific article published on 15 February 2019

A massively parallel sequencing approach uncovers ancient origins and high genetic variability of endangered Przewalski's horses

scientific article (publication date: 2011)

A mobile element based phylogeny of Old World monkeys

scientific article published on 3 June 2005

A near-chromosome-scale genome assembly of the gemsbok (Oryx gazella): an iconic antelope of the Kalahari desert

scientific article published on 01 February 2019

A prevalent POLG CAG microsatellite length allele in humans and African great apes.

scientific article

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y

scientific article published on 2 March 2016

Alu insertion loci and platyrrhine primate phylogeny

scientific article published on 18 January 2005

Ampliconic genes on the great ape Y chromosomes: Rapid evolution of copy number but conservation of expression levels

scientific article published on 06 May 2020

An Annotated Draft Genome for the Andean Bear, Tremarctos ornatus

scientific article published on 01 July 2021

An integrated chromosome-scale genome assembly of the Masai giraffe (Giraffa camelopardalis tippelskirchi)

scientific article published on 01 August 2019

Analysis of complete mitochondrial genome sequences increases phylogenetic resolution of bears (Ursidae), a mammalian family that experienced rapid speciation

scientific article (publication date: 24 October 2007)

Ancient and modern genomes unravel the evolutionary history of the rhinoceros family

scientific article

Applying SNP-Derived Molecular Coancestry Estimates to Captive Breeding Programs

scientific article

Assessing possible hybridization among managed Nubian ibex in North America

scientific article published on 13 December 2019

Author Correction: Comparative and demographic analysis of orang-utan genomes

correction of a scholarly article

Author Correction: Dense sampling of bird diversity increases power of comparative genomics

Broad Host Range of SARS-CoV-2 Predicted by Comparative and Structural Analysis of ACE2 in Vertebrates

scientific article published on 18 April 2020

Broad host range of SARS-CoV-2 predicted by comparative and structural analysis of ACE2 in vertebrates

scientific article published on 21 August 2020

Characterization of Prdm9 in Equids and Sterility in Mules ⬇️

scientific article published on April 22, 2013

Chromosomal variation and perinatal mortality in San Diego zoo Soemmerring's gazelles

scientific article

Chromosome painting in Tragulidae facilitates the reconstruction of Ruminantia ancestral karyotype

scientific article published on 29 March 2011

Chromosome-length genome assembly and karyotype of the endangered black-footed ferret (<i>Mustela nigripes</i>)

scientific article published on 30 May 2023

Comparative analysis of gene-expression patterns in human and African great ape cultured fibroblasts

scientific article

Comparative and demographic analysis of orang-utan genomes

scientific article

Comparative genomics of Balto, a famous historic dog, captures lost diversity of 1920s sled dogs ⬇️

Comparative genomics reveals insights into avian genome evolution and adaptation

scientific article

Conservation genomics of threatened animal species

scientific article

Construction of a California condor BAC library and first-generation chicken-condor comparative physical map as an endangered species conservation genomics resource

scientific article published in August 2006

Contrasting evolutionary history, anthropogenic declines and genetic contact in the northern and southern white rhinoceros (Ceratotherium simum)

scientific article published on 07 November 2018

Copy number variation analysis in the great apes reveals species-specific patterns of structural variation

scientific article

Darwinian genomics and diversity in the tree of life

scientific article published on 18 January 2022

Data gaps and opportunities for comparative and conservation biology

scientific article published on 19 April 2019

Dense sampling of bird diversity increases power of comparative genomics

scientific article published on 11 November 2020

Diverse Phylogenomic Datasets Uncover a Concordant Scenario of Laurasiatherian Interordinal Relationships

scientific article published on 30 December 2020

Erratum: The sequence and de novo assembly of the giant panda genome

scientific article published in Nature

Evaluating recovery potential of the northern white rhinoceros from cryopreserved somatic cells.

scientific article published on 24 May 2018

Evolution of gene regulation in ruminants differs between evolutionary breakpoint regions and homologous synteny blocks

scientific article published on 13 February 2019

Evolution of the tandem repeats in thymidylate synthase enhancer region (TSER) in primates

scientific article

Evolutionary Genomics and Conservation of the Endangered Przewalski's Horse

scientific article published on 22 September 2015

Evolutionary and functional novelty of pancreatic ribonuclease: a study of Musteloidea (order Carnivora).

scientific article

Evolutionary constraint and innovation across hundreds of placental mammals

scientific article published on 28 April 2023

Fitness costs associated with ancestry to isolated populations of an endangered species

scientific article published on 02 April 2020

Gallus GBrowse: a unified genomic database for the chicken

scientific article

Generation of Induced Pluripotent Stem Cells from Mammalian Endangered Species

scientific article

Genetic Structure and Diversity Among Historic and Modern Populations of the Sumatran Rhinoceros (Dicerorhinus sumatrensis)

scholarly article by Jessica R Brandt published in May 2018

Genetic diversity and conservation of endangered animal species

article

Genome of the Komodo dragon reveals adaptations in the cardiovascular and chemosensory systems of monitor lizards

scientific article published on 29 July 2019

Genome-wide characterization of centromeric satellites from multiple mammalian genomes

scientific article (publication date: 2011)

Genome-wide diversity in the California condor tracks its prehistoric abundance and decline

Genomic analysis of snub-nosed monkeys (Rhinopithecus) identifies genes and processes related to high-altitude adaptation

scientific article published on 11 July 2016

Genomic insights into the conservation status of the world's last remaining Sumatran rhinoceros populations

scientific article published on 26 April 2021

Great ape genetic diversity and population history

scientific article published on 03 July 2013

Historical population declines prompted significant genomic erosion in the northern and southern white rhinoceros (Ceratotherium simum)

scientific article published in 2021

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

scientific article published on 19 February 2018

Horse domestication and conservation genetics of Przewalski's horse inferred from sex chromosomal and autosomal sequences

scientific article

How to make a rodent giant: Genomic basis and tradeoffs of gigantism in the capybara, the world's largest rodent

How to make a rodent giant: Genomic basis and tradeoffs of gigantism in the capybara, the world's largest rodent

scientific article published on 10 November 2020

Impacts of the Cretaceous Terrestrial Revolution and KPg extinction on mammal diversification

scientific article

Incorporating indels as phylogenetic characters: Impact for interfamilial relationships within Arctoidea (Mammalia: Carnivora) ⬇️

scientific article published on November 10, 2012

Induced pluripotent stem cells from highly endangered species

scientific article

Inference of gorilla demographic and selective history from whole-genome sequence data.

scientific article

Insights into hominid evolution from the gorilla genome sequence

scientific article

Insights into mammalian TE diversity through the curation of 248 genome assemblies ⬇️

Integrating gene annotation with orthology inference at scale ⬇️

scientific article published on 28 April 2023

Intended consequences statement

scientific article published in 2021

Interspecific gene flow and the evolution of specialisation in black and white rhinoceros

scientific article published on 25 June 2020

Isolation and characterization of 23 polymorphic microsatellite loci for a West Indian iguana (Cyclura pinguis) from the British Virgin Islands ⬇️

scientific article published on May 18, 2009

Karyotype Evolution in 10 Pinniped Species: Variability of Heterochromatin versus High Conservatism of Euchromatin as Revealed by Comparative Molecular Cytogenetics

scientific article published on 10 December 2020

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

scientific article published on 21 June 2019

Macroevolutionary dynamics and historical biogeography of primate diversification inferred from a species supermatrix

scientific article published in 2012

Mitochondrial Control Region and Population Genetic Patterns of Nycticebus bengalensis and N. pygmaeus

article published in 2007

Molecular Phylogeny of Nycticebus Inferred from Mitochondrial Genes

article

Molecular decay of the tooth gene Enamelin (ENAM) mirrors the loss of enamel in the fossil record of placental mammals

scientific article (publication date: September 2009)

Molecular phylogeny and chromosomal evolution of Alcelaphini (Antilopinae).

scientific article published on 10 February 2014

Molecular phylogeny of extant equids and effects of ancestral polymorphism in resolving species-level phylogenies

scientific article published on July 28, 2012

New insights into the evolution of intronic sequences of the beta-fibrinogen gene and their application in reconstructing mustelid phylogeny

scientific article published in June 2008

On the phylogeny of Mustelidae subfamilies: analysis of seventeen nuclear non-coding loci and mitochondrial complete genomes

scientific article (publication date: 10 April 2011)

Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers ⬇️

scientific article published on April 30, 2012

Phylogenetic Utility of Nuclear Introns in Interfamilial Relationships of Caniformia (Order Carnivora) ⬇️

scientific article published on January 20, 2011

Phylogenomics of the World's Otters: Evolutionary Insights from Whole-Genome Sequences

scientific article published in 2022

Phylogenomics of the world’s otters

scientific article published in 2022

Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements

scientific article (publication date: 15 December 2009)

Platypus and echidna genomes reveal mammalian biology and evolution

scientific article published on 06 January 2021

Pre-extinction Demographic Stability and Genomic Signatures of Adaptation in the Woolly Rhinoceros

scientific article published on 30 July 2020

Precision nomenclature for the new genomics

scientific article published on 01 August 2019

Primate TNF promoters reveal markers of phylogeny and evolution of innate immunity ⬇️

scientific article (publication date: 18 July 2007)

Publisher Correction: The tuatara genome reveals ancient features of amniote evolution

scientific article published on 18 August 2020

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

scientific article

Reference genome and demographic history of the most endangered marine mammal, the vaquita

scientific article published on 22 October 2020

Reference genomes for conservation

scientific article published on 22 July 2022

Refined genome-wide comparative map of the domestic horse, donkey and human based on cross-species chromosome painting: insight into the occasional fertility of mules

scientific article published on January 2004

Resolution of the early placental mammal radiation using Bayesian phylogenetics ⬇️

scientific article (publication date: 14 December 2001)

Rewinding extinction in the northern white rhinoceros: Genetically diverse induced pluripotent stem cell bank for genetic rescue

scientific article published on 06 January 2021

Rewinding the process of mammalian extinction

scientific article

Sequencing primate genomes: what have we learned?

scientific article published on January 2009

Species identification and chromosome variation of captive two‐toed sloths ⬇️

scientific article published on November 8, 2010

The Case of X and Y Localization of Nucleolus Organizer Regions (NORs) in Tragulus javanicus (Cetartiodactyla, Mammalia).

scientific article published on 20 June 2018

The Complete Sequence and Comparative Analysis of Ape Sex Chromosomes

preprint article published in December 2023

The Earth BioGenome Project 2020: Starting the clock

scientific article published on 25 January 2022

The Use of Genomics in Conservation Management of the Endangered Visayan Warty Pig (Sus cebifrons).

scientific article published on 16 March 2016

The birds of Genome10K

scientific article

The complete sequence and comparative analysis of ape sex chromosomes

scholarly article published in June 2024

The contribution of historical processes to contemporary extinction risk in placental mammals ⬇️

The fishes of Genome 10K.

scientific article

The functional and evolutionary impacts of human-specific deletions in conserved elements ⬇️

The sequence and de novo assembly of the giant panda genome

scientific article

The tuatara genome reveals ancient features of amniote evolution

scientific article published on 5 August 2020

The tuatara genome: insights into vertebrate evolution from the sole survivor of an ancient reptilian order

scientific article published on 8 December 2019

The value of avian genomics to the conservation of wildlife

scientific article (publication date: 14 July 2009)

Three-dimensional genome rewiring in loci with human accelerated regions ⬇️

scientific article published on 28 April 2023

Tissue sampling methods and standards for vertebrate genomics

scientific article (publication date: 12 July 2012)

Towards complete and error-free genome assemblies of all vertebrate species

scientific article

Using genome-wide measures of coancestry to maintain diversity and fitness in endangered and domestic pig populations

scientific article published on 10 June 2015

Whole Genome Sequencing and Re-sequencing of the Sable Antelope (Hippotragus niger): A Resource for Monitoring Diversity in ex Situ and in Situ Populations

scientific article published on 05 June 2019

Whole-genome analyses resolve early branches in the tree of life of modern birds

scientific article

Why sequence all eukaryotes?

scientific article published on 01 January 2022

X Chromosome Evolution in Cetartiodactyla

scientific article published on 31 August 2017

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