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List of works by Tahsin Kurc

A COMPREHENSIVE FRAMEWORK FOR CLASSIFICATION OF NUCLEI IN DIGITAL MICROSCOPY IMAGING: AN APPLICATION TO DIFFUSE GLIOMAS.

scientific article published on March 2011

A Containerized Software System for Generation, Management, and Exploration of Features from Whole Slide Tissue Images

scientific article published in November 2017

A Run-time System for Efficient Execution of Scientific Workflows on Distributed Environments ⬇️

scientific article published on April 1, 2008

A Temporal Abstraction-based Extract, Transform and Load Process for Creating Registry Databases for Research ⬇️

scientific article published on March 7, 2011

A data model and database for high-resolution pathology analytical image informatics ⬇️

scientific article published on July 26, 2011

A high-performance spatial database based approach for pathology imaging algorithm evaluation

scientific article published on 14 March 2013

A roadmap for caGrid, an enterprise Grid architecture for biomedical research.

scientific article published on January 2008

An XML-based system for synthesis of data from disparate databases

scientific article (publication date: 2006)

An application of a service-oriented system to support array annotation in custom chip design for epigenomic analysis.

scientific article published on 10 April 2008

An imaging workflow for characterizing phenotypical change in large histological mouse model datasets

scientific article published on 07 April 2008

An informatics framework for testing data integrity and correctness of federated biomedical databases.

scientific article

Application Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs: A Case Study with Microscopy Image Analysis

scientific article published on 27 July 2015

Application of Grid-enabled technologies for solving optimization problems in data-driven reservoir studies

Cancer Digital Slide Archive: an informatics resource to support integrated in silico analysis of TCGA pathology data

scientific article

Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU: A Case Study from Microscopy Image Analysis

scientific article

Cooperative and out-of-core execution of the irregular wavefront propagation pattern on hybrid machines with Intel Xeon Phi™

Detection of Conflicts and Inconsistencies in Taxonomy-based Authorization Policies

scientific article

Distributed processing of very large datasets with DataCutter

Efficient Execution of Microscopy Image Analysis on CPU, GPU, and MIC Equipped Cluster Systems

scientific article published on October 2014

Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines

scientific article published on April 2013

Efficient irregular wavefront propagation algorithms on Intel(®) Xeon Phi(™).

scientific article published on October 2015

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research

scientific article

Evaluation of nucleus segmentation in digital pathology images through large scale image synthesis

scholarly article by Naiyun Zhou et al published February 2017 in Proceedings of SPIE

Feature-based Analysis of Large-scale Spatio-Temporal Sensor Data on Hybrid Architectures

scientific article

GridIMAGE: a novel use of grid computing to support interactive human and computer-assisted detection decision support

scientific article published in June 2007

HPC AND GRID COMPUTING FOR INTEGRATIVE BIOMEDICAL RESEARCH

scientific article (publication date: August 2009)

Hierarchical nucleus segmentation in digital pathology images

scientific article published on February 2016

High-Performance Computational Analysis of Glioblastoma Pathology Images with Database Support Identifies Molecular and Survival Correlates

scientific article published on December 2013

ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology ⬇️

scientific article published on May 23, 2011

In silico analysis of nuclei in glioblastoma using large-scale microscopy images improves prediction of treatment response ⬇️

scientific article published on January 1, 2011

Integrated morphologic analysis for the identification and characterization of disease subtypes

scientific article published on 24 January 2012

Large-scale biomedical image analysis in grid environments

scientific article published on March 2008

MORPHOLOGICAL SIGNATURES AND GENOMIC CORRELATES IN GLIOBLASTOMA

scientific article published on March 2011

Malignant-lesion segmentation using 4D co-occurrence texture analysis applied to dynamic contrast-enhanced magnetic resonance breast image data

scientific article

Managing and Querying Whole Slide Images ⬇️

scientific article (publication date: 16 February 2012)

Methods for Segmentation and Classification of Digital Microscopy Tissue Images

Multi-scale learning based segmentation of glands in digital colonrectal pathology images

scientific article

OpenHealth Platform for Interactive Contextualization of Population Health Open Data

scientific article

Parallel and Efficient Sensitivity Analysis of Microscopy Image Segmentation Workflows in Hybrid Systems

Parallel content-based sub-image retrieval using hierarchical searching

scientific article

Parameterized Specification, Configuration and Execution of Data-Intensive Scientific Workflows

scientific article

Redactable and auditable data access for bioinformatics research

scientific article

Region Templates: Data Representation and Management for High-Throughput Image Analysis

scientific article

Safe "cloudification" of large images through picker APIs

scientific article published on January 2016

Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies

scientific article

Semantically Interoperable XML Data

scientific article

Sensitivity analysis in digital pathology: Handling large number of parameters with compute expensive workflows

scientific article published on 13 March 2019

Sharing data and analytical resources securely in a biomedical research Grid environment

scientific article (publication date: 2008)

SparkGIS: Resource Aware Efficient In-Memory Spatial Query Processing

article

Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images.

scientific article

Temporal abstraction-based clinical phenotyping with Eureka!

scientific article

The Analytic Information Warehouse (AIW): a platform for analytics using electronic health record data

scientific article

The Cancer Biomedical Informatics Grid (caBIG) Security Infrastructure.

scientific article published on 11 October 2007

The proneural molecular signature is enriched in oligodendrogliomas and predicts improved survival among diffuse gliomas

scientific article

The tumor microenvironment strongly impacts master transcriptional regulators and gene expression class of glioblastoma

scientific article

The virtual microscope

scientific article published in December 2003

Towards Generation, Management, and Exploration of Combined Radiomics and Pathomics Datasets for Cancer Research

scientific article

Towards building computerized image analysis framework for nucleus discrimination in microscopy images of diffuse glioma ⬇️

scientific article published on January 1, 2011

VirtualPACS--a federating gateway to access remote image data resources over the grid

scientific article (publication date: March 2009)

Visualization and Analysis for Near-Real-Time Decision Making in Distributed Workflows

scholarly article published May 2016

caGrid 1.0: a Grid enterprise architecture for cancer research.

scientific article published on 11 October 2007

caGrid 1.0: an enterprise Grid infrastructure for biomedical research

scientific article published on 20 December 2007

caGrid: design and implementation of the core architecture of the cancer biomedical informatics grid

scientific article published on 09 June 2006

e-Science, caGrid, and Translational Biomedical Research

scientific article

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