List of works - Kimberly Glass

A network model for angiogenesis in ovarian cancer

scientific article published on 11 April 2015

A network-based approach to eQTL interpretation and SNP functional characterization

All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues

scientific article

Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets

scientific article published on 26 February 2014

Biomarker correlation network in colorectal carcinoma by tumor anatomic location

scientific article

COPD subtypes identified by network-based clustering of blood gene expression

scientific article published on 7 January 2016

Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis

scientific article

Combinatorial recruitment of CREB, C/EBPβ and c-Jun determines activation of promoters upon keratinocyte differentiation

scientific article

Comprehension of humor in children with nonverbal learning disabilities, reading disabilities, and without learning disabilities

scientific article published on 26 August 2008

Correction: Combinatorial Recruitment of CREB, C/EBPβ and c-Jun Determines Activation of Promoters upon Keratinocyte Differentiation.

scientific article published on 31 December 2013

CpG methylation of half-CRE sequences creates C/EBPα binding sites that activate some tissue-specific genes ⬇️

scientific article published on November 8, 2010

DNA methylation profiling in human lung tissue identifies genes associated with COPD.

scientific article published on 26 August 2016

Diet-induced weight loss leads to a switch in gene regulatory network control in the rectal mucosa

scientific article

Differential connectivity of gene regulatory networks distinguishes corticosteroid response in asthma

scientific article published on 20 July 2017

ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients

scientific article published on March 2013

Ensemble genomic analysis in human lung tissue identifies novel genes for chronic obstructive pulmonary disease

scientific article published on 15 January 2018

Estimating Gene Regulatory Networks with pandaR.

scientific article published on 11 March 2017

Estimating Sample-Specific Regulatory Networks

article

Estimating drivers of cell state transitions using gene regulatory network models

scientific article published on 13 December 2017

Exploring regulation in tissues with eQTL networks

scientific article published on 29 August 2017

Fabrication of duplex DNA microarrays incorporating methyl-5-cytosine ⬇️

scientific article published on December 5, 2011

Finding New Order in Biological Functions from the Network Structure of Gene Annotations

scientific article published on 20 November 2015

Functional interactors of three genome-wide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue

scientific article published on 13 March 2017

Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism

article

Haploinsufficiency of Hedgehog interacting protein causes increased emphysema induced by cigarette smoke through network rewiring

scientific article

Implications of functional similarity for gene regulatory interactions

scientific article published on February 2012

KDM4A lysine demethylase induces site-specific copy gain and rereplication of regions amplified in tumors

scientific article

Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice

scientific article published on 11 January 2016

Mitophagy-dependent necroptosis contributes to the pathogenesis of COPD

scientific article

Multi-scale chromatin state annotation using a hierarchical hidden Markov model

scientific article published on 7 April 2017

Network Medicine in the Age of Biomedical Big Data

article by Abhijeet R Sonawane et al published 2019 in Frontiers in Genetics

New Statistical Methods for Constructing Robust Differential Correlation Networks to characterize the interactions among microRNAs

Passing messages between biological networks to refine predicted interactions

scientific article

RNA-sequencing across three matched tissues reveals shared and tissue-specific gene expression and pathway signatures of COPD

article

Regulatory network changes between cell lines and their tissues of origin

scientific article published on 12 September 2017

Serotonin receptor 2B signaling with interstitial cell activation and leaflet remodeling in degenerative mitral regurgitation

scientific article published on 29 December 2017

Sex-Based Genetic Association Study Identifies CELSR1 as a Possible Chronic Obstructive Pulmonary Disease Risk Locus among Women.

scientific article

Sexual dimorphism in gene expression and regulatory networks across human tissues

article

Sexually-dimorphic targeting of functionally-related genes in COPD

scientific article

Suppression of the C/EBP family of transcription factors in adipose tissue causes lipodystrophy

scientific article

The relation of humor and child development: social, adaptive, and emotional aspects

scientific article published on 17 June 2010

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

scientific article published on 3 October 2017

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

scholarly article published 20 October 2016

Transcriptional landscape of cell lines and their tissues of origin

Transcriptomic Analysis of Lung Tissue from Cigarette Smoke-Induced Emphysema Murine Models and Human Chronic Obstructive Pulmonary Disease Show Shared and Distinct Pathways

scientific article published in March 2017

Understanding Tissue-Specific Gene Regulation

scientific article published in October 2017

Understanding Tissue-specific Gene Regulation

article

List of works by Kimberly Glass

A network model for angiogenesis in ovarian cancer

A network-based approach to eQTL interpretation and SNP functional characterization

All and only CpG containing sequences are enriched in promoters abundantly bound by RNA polymerase II in multiple tissues

Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets

Biomarker correlation network in colorectal carcinoma by tumor anatomic location

COPD subtypes identified by network-based clustering of blood gene expression

Combinatorial assembly of developmental stage-specific enhancers controls gene expression programs during human erythropoiesis

Combinatorial recruitment of CREB, C/EBPβ and c-Jun determines activation of promoters upon keratinocyte differentiation

Comprehension of humor in children with nonverbal learning disabilities, reading disabilities, and without learning disabilities

Correction: Combinatorial Recruitment of CREB, C/EBPβ and c-Jun Determines Activation of Promoters upon Keratinocyte Differentiation.

CpG methylation of half-CRE sequences creates C/EBPα binding sites that activate some tissue-specific genes ⬇️

DNA methylation profiling in human lung tissue identifies genes associated with COPD.

Diet-induced weight loss leads to a switch in gene regulatory network control in the rectal mucosa

Differential connectivity of gene regulatory networks distinguishes corticosteroid response in asthma

ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients

Ensemble genomic analysis in human lung tissue identifies novel genes for chronic obstructive pulmonary disease

Estimating Gene Regulatory Networks with pandaR.

Estimating Sample-Specific Regulatory Networks

Estimating drivers of cell state transitions using gene regulatory network models

Exploring regulation in tissues with eQTL networks

Fabrication of duplex DNA microarrays incorporating methyl-5-cytosine ⬇️

Finding New Order in Biological Functions from the Network Structure of Gene Annotations

Functional interactors of three genome-wide association study genes are differentially expressed in severe chronic obstructive pulmonary disease lung tissue

Gene Regulatory Network Analysis Identifies Sex-Linked Differences in Colon Cancer Drug Metabolism

Haploinsufficiency of Hedgehog interacting protein causes increased emphysema induced by cigarette smoke through network rewiring

Implications of functional similarity for gene regulatory interactions

KDM4A lysine demethylase induces site-specific copy gain and rereplication of regions amplified in tumors

Mitochondrial iron chelation ameliorates cigarette smoke-induced bronchitis and emphysema in mice

Mitophagy-dependent necroptosis contributes to the pathogenesis of COPD

Multi-scale chromatin state annotation using a hierarchical hidden Markov model

Network Medicine in the Age of Biomedical Big Data

New Statistical Methods for Constructing Robust Differential Correlation Networks to characterize the interactions among microRNAs

Passing messages between biological networks to refine predicted interactions

RNA-sequencing across three matched tissues reveals shared and tissue-specific gene expression and pathway signatures of COPD

Regulatory network changes between cell lines and their tissues of origin

Serotonin receptor 2B signaling with interstitial cell activation and leaflet remodeling in degenerative mitral regurgitation

Sex-Based Genetic Association Study Identifies CELSR1 as a Possible Chronic Obstructive Pulmonary Disease Risk Locus among Women.

Sexual dimorphism in gene expression and regulatory networks across human tissues

Sexually-dimorphic targeting of functionally-related genes in COPD

Suppression of the C/EBP family of transcription factors in adipose tissue causes lipodystrophy

The relation of humor and child development: social, adaptive, and emotional aspects

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

Tissue-aware RNA-Seq processing and normalization for heterogeneous and sparse data

Transcriptional landscape of cell lines and their tissues of origin

Transcriptomic Analysis of Lung Tissue from Cigarette Smoke-Induced Emphysema Murine Models and Human Chronic Obstructive Pulmonary Disease Show Shared and Distinct Pathways

Understanding Tissue-Specific Gene Regulation

Understanding Tissue-specific Gene Regulation

lionessR: single-sample network reconstruction in R