List of works - Abhinav Nellore

ASCOT identifies key regulators of neuronal subtype-specific splicing

scientific article published on 09 January 2020

CHANCE: comprehensive software for quality control and validation of ChIP-seq data

scientific article

Cloud computing for genomic data analysis and collaboration

scientific article published on 30 January 2018

Flexible expressed region analysis for RNA-seq with derfinder

scientific article published on 29 September 2016

Flexible expressed region analysis for RNA-seq with derfinder

scholarly article published 19 February 2015

Human leukocyte antigen susceptibility map for SARS-CoV-2

scientific article (preprint)

Human methylome variation across Infinium 450K data on the Gene Expression Omnibus

scientific article published on 22 April 2021

Human splicing diversity across the Sequence Read Archive

scientific article published on 29 January 2016

Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

scientific article

NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data

scientific article

Population-level distribution and putative immunogenicity of cancer neoepitopes

scientific article published on 13 April 2018

Rail-RNA: Scalable analysis of RNA-seq splicing and coverage

scientific article published on 7 May 2015

Rail-RNA: scalable analysis of RNA-seq splicing and coverage

scientific article

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

scientific article

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

scientific article published on 24 December 2015

Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples

scientific article published on September 2017

neoepiscope improves neoepitope prediction with multivariant phasing

scientific article published on 01 February 2020

qSVA framework for RNA quality correction in differential expression analysis

scientific article

recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor

scientific article published on 24 August 2017

List of works by Abhinav Nellore

ASCOT identifies key regulators of neuronal subtype-specific splicing

CHANCE: comprehensive software for quality control and validation of ChIP-seq data

Cloud computing for genomic data analysis and collaboration

Flexible expressed region analysis for RNA-seq with derfinder

Flexible expressed region analysis for RNA-seq with derfinder

Human leukocyte antigen susceptibility map for SARS-CoV-2

Human methylome variation across Infinium 450K data on the Gene Expression Omnibus

Human splicing diversity across the Sequence Read Archive

Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive

NSeq: a multithreaded Java application for finding positioned nucleosomes from sequencing data

Population-level distribution and putative immunogenicity of cancer neoepitopes

Rail-RNA: Scalable analysis of RNA-seq splicing and coverage

Rail-RNA: scalable analysis of RNA-seq splicing and coverage

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce

Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples

neoepiscope improves neoepitope prediction with multivariant phasing

qSVA framework for RNA quality correction in differential expression analysis

recount workflow: Accessing over 70,000 human RNA-seq samples with Bioconductor