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List of works by Martin Ryberg

A Comprehensive, Automatically Updated Fungal ITS Sequence Dataset for Reference-Based Chimera Control in Environmental Sequencing Efforts

scientific article published on 19 March 2015

A software pipeline for processing and identification of fungal ITS sequences

scientific article published on 15 January 2009

An evolutionary perspective on morphological and ecological characters in the mushroom family Inocybaceae (Agaricomycotina, Fungi).

scientific article

An open source chimera checker for the fungal ITS region

scientific article published on November 2010

An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology

scholarly article by Henrik Nilsson et al published November 2010 in Fungal Ecology

An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity

scientific article

Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden)

scientific article (publication date: 26 September 2016)

Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi

scientific article

Asynchronous origins of ectomycorrhizal clades of Agaricales ⬇️

scientific article (publication date: 22 May 2012)

Complex effects of mammalian grazing on extramatrical mycelial biomass in the Scandes forest-tundra ecotone

scientific article

Correction to: FungalTraits: a user friendly traits database of fungi and fungus-like stramenopiles

scientific article published in 2021

Dating the emergence of truffle-like fungi in Australia, by using an augmented meta-analysis

article

Dealing with incomplete taxon sampling and diversification of a large clade of mushroom-forming fungi ⬇️

scientific article published on March 25, 2011

DivBayes and SubT: exploring species diversification using Bayesian statistics

scientific article

Evolution of the toxins muscarine and psilocybin in a family of mushroom-forming fungi

scientific article published on 23 May 2013

Five simple guidelines for establishing basic authenticity and reliability of newly generated fungal ITS sequences

scientific article

Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi

scientific article published on 30 November 2020

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

scientific article published in November 2020

Global Multilocus Sequence Type Analysis of Chlamydia trachomatis Strains from 16 Countries

scientific article published on 29 April 2015

Global biogeography of the ectomycorrhizal /sebacina lineage (Fungi, Sebacinales) as revealed from comparative phylogenetic analyses

scientific article

High-level classification of the Fungi and a tool for evolutionary ecological analyses

scientific article published on 16 May 2018

Host genetic variation strongly influences the microbiome structure and function in fungal fruiting-bodies

scientific article published on 14 February 2018

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

article

Improving ITS sequence data for identification of plant pathogenic fungi

article

Into and out of the tropics: global diversification patterns in a hyperdiverse clade of ectomycorrhizal fungi

scientific article published on 7 December 2015

Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.

scientific article published on 26 May 2008

Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota).

scientific article

Molecular operational taxonomic units as approximations of species in the light of evolutionary models and empirical data from Fungi

scientific article

Molecular phylogenetics and taxonomy in Psathyrellaceae (Agaricales) with focus on psathyrelloid species: introduction of three new genera and 18 new species

scholarly article by Leif Örstadius et al published 11 April 2015 in Mycological Progress

Multigene phylogeny and taxonomic revision of Atheliales s.l.: Reinstatement of three families and one new family, Lobuliciaceae fam. nov.

scientific article published in 2021

New light on names and naming of dark taxa.

scientific article published on 23 February 2018

Paxilloboletus gen. nov., a new lamellate bolete genus from tropical Africa ⬇️

scientific article published in January 2022

Pseudolagarobasidium (Basidiomycota): on the reinstatement of a genus of parasitic, saprophytic, and endophytic resupinate fungi

scientific article published in 2008

Rethinking taxon sampling in the light of environmental sequencing

article by Henrik Nilsson et al published 25 August 2010 in Cladistics

Structure and function of the global topsoil microbiome

scientific article published in Nature

Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

scientific article published in 2006

The ITS region as a target for characterization of fungal communities using emerging sequencing technologies

scientific article

The genome and microbiome of a dikaryotic fungus (Inocybe terrigena, Inocybaceae) revealed by metagenomics

scientific article published on 12 January 2018

The genus Catathelasma (Catathelasmataceae, Basidiomycota) in China

scientific article published on 3 February 2020

Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi

scientific article

Towards global patterns in the diversity and community structure of ectomycorrhizal fungi

scientific article

Two new African siblings of Pulveroboletus ravenelii (Boletaceae)

scientific article published on 12 December 2018

Weak habitat specificity in ectomycorrhizal communities associated with Salix herbacea and Salix polaris in alpine tundra

scientific article published on 3 August 2010

When mycologists describe new species, not all relevant information is provided (clearly enough)

scientific article published on 10 September 2020

The curse of the uncultured fungus ⬇️

scholarly article published in 2022

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