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List of works by Petr Baldrian

A Short-Term Response of Soil Microbial Communities to Cadmium and Organic Substrate Amendment in Long-Term Contaminated Soil by Toxic Elements

article

A conceptual framework for understanding the biogeochemistry of dry riverbeds through the lens of soil science

scientific article published in 2019

A meta-analysis of global fungal distribution reveals climate-driven patterns

scientific article published on 13 November 2019

Active and total microbial communities in forest soil are largely different and highly stratified during decomposition

scientific article

Aerobic bacterial catabolism of persistent organic pollutants - potential impact of biotic and abiotic interaction.

scientific article published on 4 February 2016

Alien ectomycorrhizal plants differ in their ability to interact with co-introduced and native ectomycorrhizal fungi in novel sites

scientific article published on 04 June 2020

Analysis of soil fungal communities by amplicon pyrosequencing: current approaches to data analysis and the introduction of the pipeline SEED

article

Author Correction: GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

scientific article published on 15 September 2020

BTW – Bioinformatics Through Windows: an easy-to-install package to analyze marker gene data

article

BTW-Bioinformatics Through Windows: an easy-to-install package to analyze marker gene data

article

Back to the Future of Soil Metagenomics

scientific article

Bacteria associated with decomposing dead wood in a natural temperate forest

scientific article

Bacteria from the endosphere and rhizosphere of Quercus spp. use mainly cell wall-associated enzymes to decompose organic matter

scientific article published on 25 March 2019

Bacterial communities in tetrachloroethene-polluted groundwaters: A case study ⬇️

scientific article published on April 9, 2013

Bacterial succession on decomposing leaf litter exhibits a specific occurrence pattern of cellulolytic taxa and potential decomposers of fungal mycelia.

scientific article published on 18 August 2016

Biodegradation and detoxification of olive mill wastewater by selected strains of the mushroom genera Ganoderma and Pleurotus

scientific article

Biotic interactions mediate soil microbial feedbacks to climate change

scientific article

Cellulase-Hemicellulase Activities and Bacterial Community Composition of Different Soils from Algerian Ecosystems

scientific article published on 12 September 2018

Cellulose and hemicellulose decomposition by forest soil bacteria proceeds by the action of structurally variable enzymatic systems

scientific article published on 29 April 2016

Cellulose utilization in forest litter and soil: identification of bacterial and fungal decomposers

scientific article published on 27 March 2012

Changes in Functional Response of Soil Microbial Community along Chronosequence of Spontaneous Succession on Post Mining Forest Sites Evaluated by Biolog and SIR Methods

Changes in oxidative enzyme activity during interspecific mycelial interactions involving the white-rot fungus Trametes versicolor

scientific article published on 03 April 2010

Clearcutting alters decomposition processes and initiates complex restructuring of fungal communities in soil and tree roots.

scientific article published on 15 January 2018

Climate fails to predict wood decomposition at regional scales

article

Climate-driven shifts in plant and fungal communities can lead to topsoil carbon loss in alpine ecosystems

scientific article published in 2023

Community-level physiological profiling analyses show potential to identify the copiotrophic bacteria present in soil environments

scientific article published on 07 February 2017

Comparative assessment of fungal augmentation treatments of a fine-textured and historically oil-contaminated soil.

scientific article

Composition and functioning of the soil microbiome in the highest altitudes of the Italian Alps and potential effects of climate change

scientific article published in 2022

Composition of fungal and bacterial communities in forest litter and soil is largely determined by dominant trees

scientific article published on 23 February 2015

Composition of soil bacterial and fungal communities in relation to vegetation composition and soil characteristics along an altitudinal gradient

scientific article published on 06 October 2020

Copper and cadmium increase laccase activity inPleurotus ostreatus ⬇️

scientific article published on 01 January 2002

Copper-ligand complex for the decolorization of synthetic dyes

scientific article published in December 2004

Correction to: FungalTraits: a user friendly traits database of fungi and fungus-like stramenopiles

scientific article published in 2021

Dead fungal mycelium in forest soil represents a decomposition hotspot and a habitat for a specific microbial community

scientific article published on 02 February 2016

Dead-wood addition promotes non-saproxylic epigeal arthropods but effects are mediated by canopy openness

scientific article published on 19 October 2016

Deadwood-Inhabiting Bacteria Show Adaptations to Changing Carbon and Nitrogen Availability During Decomposition

scientific article published on 17 June 2021

Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199

scientific article

Decolorization of structurally different synthetic dyes using cobalt(II)/ascorbic acid/hydrogen peroxide system

scientific article published in March 2003

Decolorization of synthetic dyes using a copper complex with glucaric acid.

scientific article published in January 2004

Decomposer food web in a deciduous forest shows high share of generalist microorganisms and importance of microbial biomass recycling.

scientific article published on 28 February 2018

Decomposition in forest ecosystems: after decades of research still novel findings

scientific article published in 2011

Defending Earth’s terrestrial microbiome

scientific article published on 3 October 2022

Degradation of cellulose and hemicelluloses by the brown rot fungus Piptoporus betulinus--production of extracellular enzymes and characterization of the major cellulases

scientific article

Degradation of cellulose by basidiomycetous fungi

scientific article published on 26 March 2008

Degradation of lignocellulose by Pleurotus ostreatus in the presence of copper, manganese, lead and zinc

scientific article published on 12 April 2005

Development of bacterial community during spontaneous succession on spoil heaps after brown coal mining

scientific article

Different twig litter (Salix caprea) diameter does affect microbial community activity and composition but not decay rate

scientific article published on 01 September 2018

Differential degradation of oak (Quercus petraea) leaf litter by litter-decomposing basidiomycetes

scientific article

Differential sensitivity of total and active soil microbial communities to drought and forest management

scientific article

Distinct environmental variables drive the community composition of mycorrhizal and saprotrophic fungi at the alpine treeline ecotone

scientific article published in 2017

Distribution of Soil Extracellular Enzymatic, Microbial, and Biological Functions in the C and N-Cycle Pathways Along a Forest Altitudinal Gradient

scientific article published on 04 September 2021

Diversity of foliar endophytes in wind-fallen Picea abies trees

scientific article published on 28 July 2011

Diversity of fungi and bacteria in species-rich grasslands increases with plant diversity in shoots but not in roots and soil

article

Dominant herbaceous plants contribute to the spatial heterogeneity of beech and riparian forest soils by influencing fungal and bacterial diversity

scientific article published in March 2024

Dominant trees affect microbial community composition and activity in post-mining afforested soils

article

Draft Genome Sequence of Burkholderia sordidicola S170, a Potential Plant Growth Promoter Isolated from Coniferous Forest Soil in the Czech Republic

scientific article published on 14 August 2014

Drivers of microbial community structure in forest soils

scientific article published on 30 March 2018

Drivers of yeast community composition in the litter and soil of a temperate forest

scientific article published on 27 October 2016

Early successional ectomycorrhizal fungi are more likely to naturalize outside their native range than other ectomycorrhizal fungi

scientific article published on 26 March 2020

Ecological Divergence Within the Enterobacterial Genus <i>Sodalis</i>: From Insect Symbionts to Inhabitants of Decomposing Deadwood

scientific article published on 11 June 2021

Ecological succession reveals potential signatures of marine-terrestrial transition in salt marsh fungal communities

scientific article published on 29 January 2016

Ecology and metagenomics of soil microorganisms

scientific article published on 30 August 2011

Ecology of coarse wood decomposition by the saprotrophic fungus Fomes fomentarius ⬇️

scientific article published on July 29, 2010

Ectomycorrhizal fungi and their enzymes in soils: is there enough evidence for their role as facultative soil saprotrophs?

scientific article

Editorial: Special thematic issue on the ecology of soil microorganisms

scientific article published on 2 December 2016

Editorial: special issue on the ecology of soil microorganisms

scientific article published on 01 December 2019

Effect of forest fire prevention treatments on bacterial communities associated with productive Boletus edulis sites

scientific article published on 15 April 2019

Effect of long-term preservation of basidiomycetes on perlite in liquid nitrogen on their growth, morphological, enzymatic and genetic characteristics

scientific article published on September 17, 2010

Effects of the soil microbial community on mobile proportions and speciation of mercury (Hg) in contaminated soil.

scientific article published on 13 January 2016

Efficient screening of potential cellulases and hemicellulases produced by Bosea sp. FBZP-16 using the combination of enzyme assays and genome analysis

scientific article published on 5 January 2017

Enzyme activities and microbial biomass in topsoil layer during spontaneous succession in spoil heaps after brown coal mining

Enzyme activities of fungi associated with Picea abies needles

scientific article published on 19 June 2011

Estimation of bound and free fractions of lignocellulose-degrading enzymes of wood-rotting fungi Pleurotus ostreatus, Trametes versicolor and Piptoporus betulinus

scientific article published on 8 August 2005

Evaluating the role of biotic and chemical components of plant-soil feedback of primary successional plants

scientific article published on 20 December 2019

Explorative Meta-Analysis of 377 Extant Fungal Genomes Predicted a Total Mycobiome Functionality of 42.4 Million KEGG Functions

scientific article published on 06 February 2020

Extracellular Enzymes of the White-Rot Fungus Fomes fomentarius and Purification of 1,4-β-Glucosidase ⬇️

scientific article published on November 14, 2012

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

scientific article published on 18 September 2017

Feeding on fungi: Genomic and proteomic analysis of the enzymatic machinery of bacteria decomposing fungal biomass

scientific article published on 02 August 2020

Forest Microhabitat Affects Succession of Fungal Communities on Decomposing Fine Tree Roots

scientific article published in 2021

Forest Soil Bacteria: Diversity, Involvement in Ecosystem Processes, and Response to Global Change

scientific article

Forest microbiome: diversity, complexity and dynamics.

scientific article

Fungal Communities in Soils: Soil Organic Matter Degradation

scientific article published on January 2016

Fungal Community Development in Decomposing Fine Deadwood Is Largely Affected by Microclimate

scientific article published on 13 April 2022

Fungal bioremediation of the creosote-contaminated soil: influence of Pleurotus ostreatus and Irpex lacteus on polycyclic aromatic hydrocarbons removal and soil microbial community composition in the laboratory-scale study

scientific article

Fungal community on decomposing leaf litter undergoes rapid successional changes ⬇️

scientific article published on October 11, 2012

Fungal diversity living in the root and sporophore of the endemic Korean fern Mankyua chejuense

scientific article published in 2021

Fungal laccases - occurrence and properties

scientific article

Fungal succession in the needle litter of a montane Picea abies forest investigated through strain isolation and molecular fingerprinting

scientific article published on 09 November 2014

FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles

scientific article published in November 2020

GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

scientific article published on 13 July 2020

Great differences in performance and outcome of high-throughput sequencing data analysis platforms for fungal metabarcoding

scientific article published in 2018

High-Throughput Sequencing Analysis of the Bacterial Community in Stone Fruit Phloem Tissues Infected by "Candidatus Phytoplasma prunorum"

scientific article published on 07 September 2018

ICP-MS determination of heavy metals in submerged cultures of wood-rotting fungi

scientific article published on 01 February 2004

Increase of laccase activity during interspecific interactions of white-rot fungi

scientific article published in November 2004

Independent effects of host and environment on the diversity of wood-inhabiting fungi

scientific article published in 2018

Influence of dimethyl sulfoxide on extracellular enzyme production by Pleurotus ostreatus

scientific article published on 01 May 2006

Influence of iron and copper nanoparticle powder on the production of lignocellulose degrading enzymes in the fungus Trametes versicolor

scientific article published on 04 February 2010

Inter-laboratory testing of the effect of DNA blocking reagent G2 on DNA extraction from low-biomass clay samples.

scientific article published on 9 April 2018

Interactions of saprotrophic fungi with tree roots: can we observe the emergence of novel ectomycorrhizal fungi?

scientific article published on 01 July 2017

Intraspecific variability in growth response to cadmium of the wood-rotting fungus Piptoporus betulinus

scientific article published on 01 May 2002

Investigation of the response of wood-rotting fungi to copper stress by size-exclusion chromatography and capillary zone electrophoresis with ICP MS detection

scientific article published on 21 December 2001

Is the effect of trees on soil properties mediated by soil fauna? A case study from post-mining sites

article published in 2013

Laccase activity in soils: Considerations for the measurement of enzyme activity ⬇️

scientific article published on 02 April 2012

Laccase-catalysed oxidations of naturally occurring phenols: from in vivo biosynthetic pathways to green synthetic applications

scientific article published on 26 July 2011

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

scientific article published on 12 October 2020

Libkindia masarykiana gen. et sp. nov., Yurkovia mendeliana gen. et sp. nov. and Leucosporidium krtinense f.a. sp. nov., isolated from temperate forest soils

scientific article

Ligninolytic Enzyme Production and Decolorization Capacity of Synthetic Dyes by Saprotrophic White Rot, Brown Rot, and Litter Decomposing Basidiomycetes

scientific article published on 19 November 2020

Lignocellulolytic systems of soil bacteria: A vast and diverse toolbox for biotechnological conversion processes

scientific article published on 22 March 2019

Lignocellulose degradation by Pleurotus ostreatus in the presence of cadmium

scientific article published on 01 March 2003

Litter decomposition along a primary post-mining chronosequence

Long-term decomposition of litter in the montane forest and the definition of fungal traits in the successional space

scientific article published on 26 February 2020

Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood

publication published on 03 August 2021

Microbial activity and the dynamics of ecosystem processes in forest soils

scientific article

Microbial activity in alpine soils under climate change

scientific article published in 2021

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

scientific article published on 19 August 2015

Microbial communities in local and transplanted soils along a latitudinal gradient

Microbial genomics, transcriptomics and proteomics: new discoveries in decomposition research using complementary methods

scientific article published on 3 January 2014

Moss biocrust accelerates the recovery and resilience of soil microbial communities in fire-affected semi-arid Mediterranean soils

scientific article published in 2022

Mycobiome diversity: high-throughput sequencing and identification of fungi

scientific article published on 01 January 2019

Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach

scientific article published on 09 February 2021

Olive mill wastewater biodegradation potential of white-rot fungi--Mode of action of fungal culture extracts and effects of ligninolytic enzymes

scientific article

Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle

scientific article published on 12 November 2018

Phylogenetic composition and properties of bacteria coexisting with the fungus Hypholoma fasciculare in decaying wood

scientific article published on 11 June 2009

Plant effects on microbiome composition are constrained by environmental conditions in a successional grassland

scientific article published on 24 January 2024

Plant–soil feedbacks in a diverse grassland: Soil remembers, but not too much

scientific article published on 13 April 2023

Polycyclic aromatic hydrocarbons degradation and microbial community shifts during co-composting of creosote-treated wood.

scientific article

Potential of cometabolic transformation of polysaccharides and lignin in lignocellulose by soil Actinobacteria

scientific article

Predictors of soil fungal biomass and community composition in temperate mountainous forests in Central Europe

scientific article published in 2021

Primary determinants of communities in deadwood vary among taxa but are regionally consistent

scientific article published on 14 July 2020

Production of Fungal Mycelia in a Temperate Coniferous Forest Shows Distinct Seasonal Patterns

scientific article published on 26 September 2020

Purification of a new manganese peroxidase of the white-rot fungus Irpex lacteus, and degradation of polycyclic aromatic hydrocarbons by the enzyme

scientific article published on 20 September 2005

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

scientific article published on 3 December 2021

Recommendations for connecting molecular sequence and biodiversity research infrastructures through ELIXIR

scientific article published in 2022

Reply to Veresoglou: Overdependence on "significance" testing in biology

scientific article published on 25 August 2015

SEED 2: a user-friendly platform for amplicon high-throughput sequencing data analyses

scientific article published on 14 February 2018

Saprotrophic basidiomycete mycelia and their interspecific interactions affect the spatial distribution of extracellular enzymes in soil

scientific article published on 26 May 2011

Scaling Down the Analysis of Environmental Processes: Monitoring Enzyme Activity in Natural Substrates on a Millimeter Resolution Scale ⬇️

scientific article published on March 2, 2012

Seasonal dynamics of fungal communities in a temperate oak forest soil.

scientific article

Silvibacterium bohemicum gen. nov. sp. nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park

scientific article

Small-scale spatial heterogeneity of ecosystem properties, microbial community composition and microbial activities in a temperate mountain forest soil

scientific article published on 7 September 2016

Snags, logs, stumps, and microclimate as tools optimizing deadwood enrichment for forest biodiversity

scientific article published in 2022

Soil Microflora Development in Post-mining Sites

article

Soil food web changes during spontaneous succession at post mining sites: a possible ecosystem engineering effect on food web organization?

scientific article

Specialisation events of fungal metacommunities exposed to a persistent organic pollutant are suggestive of augmented pathogenic potential

scientific article published in 2018

Specific utilization of biopolymers of plant and fungal origin reveals the existence of substrate-specific guilds for bacteria in temperate forest soils

scientific article published in 2022

Stand age affects fungal community composition in a Central European temperate forest

scientific article published on 06 October 2020

Statistical test for tolerability of effects of an antifungal biocontrol strain on fungal communities in three arable soils

scientific article published on 23 January 2017

Successional development of wood-inhabiting fungi associated with dominant tree species in a natural temperate floodplain forest

scientific article published in 2022

Symbiotic status alters fungal eco‐evolutionary offspring trajectories

scientific article published in 2023

Synthesis of zirconia-immobilized copper chelates for catalytic decomposition of hydrogen peroxide and the oxidation of polycyclic aromatic hydrocarbons

scientific article published on 13 June 2008

Temporal turnover of the soil microbiome composition is guild‐specific

scientific article

Termites are associated with external species-specific bacterial communities

scientific article published on 23 October 2020

Terracidiphilus gabretensis gen. nov., sp. nov., an Abundant and Active Forest Soil Acidobacterium Important in Organic Matter Transformation.

scientific article published on 6 November 2015

The Effect of Microbial Diversity and Biomass on Microbial Respiration in Two Soils along the Soil Chronosequence

scientific article published in 2022

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses ⬇️

scientific article published on February 27, 2013

The active microbial diversity drives ecosystem multifunctionality and is physiologically related to carbon availability in Mediterranean semi-arid soils.

scientific article published on 2 August 2016

The concept of operational taxonomic units revisited: genomes of bacteria that are regarded as closely related are often highly dissimilar

scientific article published on 21 June 2018

The contribution of insects to global forest deadwood decomposition

scientific article

The era of reference genomes in conservation genomics

scientific article published in March 2022

The known and the unknown in soil microbial ecology

scientific article published on 01 February 2019

The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities

scientific article published on 19 August 2015

Thousands of small, novel genes predicted in global phage genomes

scientific article published in 2022

Top-down control of soil fungal community composition by a globally distributed keystone consumer

scientific article published in November 2013

Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition

scientific article

When the forest dies: the response of forest soil fungi to a bark beetle-induced tree dieback

scientific article

Wood resource and not fungi attract early-successional saproxylic species ofHeteroptera -an experimental approach

Mikroorganismy v lesních ekosystémech: diverzita, dynamika a funkce

book edition published in 2017

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