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List of works by Piotr Zielenkiewicz

3-Methyladenine-DNA glycosylase I from Escherichia coli-computer modeling and supporting experimental evidence

scientific article published in February 2000

A Specialized Histone H1 Variant Is Required for Adaptive Responses to Complex Abiotic Stress and Related DNA Methylation in Arabidopsis

scientific article (publication date: November 2015)

A TIP on malaria (genomics).

scientific article published in July 2003

A comprehensive, quantitative, and genome-wide model of translation

scientific article

A kinetic model of the evolution of a protein interaction network

scientific article

Arteriovenous oscillations of the redox potential: Is the redox state influencing blood flow?

scientific article

Biochemical kinetics in changing volumes

scientific article published in January 2004

Co-regulation of translation in protein complexes

scientific article published on 25 April 2015

DeCAF-Discrimination, Comparison, Alignment Tool for 2D PHarmacophores

scientific article published on 06 July 2017

Detection of Plant miRNAs Abundance in Human Breast Milk

scientific article published on 23 December 2017

DiSCuS: an open platform for (not only) virtual screening results management

scientific article published on 3 January 2014

Discovery of novel potent ΔF508-CFTR correctors that target the nucleotide binding domain

scientific article

Discovery of two novel, small-molecule inhibitors of DNA methylation

scientific article published in January 2006

Dominance from the perspective of gene-gene and gene-chemical interactions

scientific article published on 27 November 2015

Double selective synthetic approach to the N-functionalized 1,4,7-triazacyclononane derivatives: chelating compounds for controllable protein orientation

scientific article published in March 2010

EU-OPENSCREEN: A Novel Collaborative Approach to Facilitate Chemical Biology

scientific article published on 07 January 2019

Electrostatic potential of B-DNA: effect of interionic correlations

scientific article published on December 1998

Epigenetic reactivation of tumor suppressor genes by a novel small-molecule inhibitor of human DNA methyltransferases.

scientific article published in July 2005

Establishment and functional validation of a structural homology model for human DNA methyltransferase 1.

scientific article

Evidence for rapid association-dissociation of ribonuclease T1 from a recombinant strain of Escherichia coli.

scientific article published in September 1989

FEDMA--a simple algorithm for theoretical modeling of linear metabolic pathways: from fuzzy data sets to prediction and experiment.

scientific article

High-throughput sequencing identification of novel and conserved miRNAs in the Brassica oleracea leaves

scientific article

Host microRNA analysis in cyprinid Herpesvirus-3 (CyHV-3) infected common carp

Hypophosphatemia and sudden infant death syndrome (SIDS)--is ATP the link?

scientific article published on 23 October 2013

In silico identification of plant miRNAs in mammalian breast milk exosomes--a small step forward?

scientific article

Influence of macromolecular crowding on protein-protein association rates--a Brownian dynamics study

scientific article published on 29 August 2008

Lattice simulations of protein crystal formation

scientific article published in March 1999

MOFOID--not only the protein modeling server

scientific article published in 2005

Mapping Protein-Protein Interactions of the Resistance-Related Bacterial Zeta Toxin-Epsilon Antitoxin Complex (ε₂ζ₂) with High Affinity Peptide Ligands Using Fluorescence Polarization

scientific article published on 16 July 2016

Methods of molecular modelling of protein-protein interactions

scientific article

Microscopic model of protein crystal growth

scientific article published in September 2000

Molecular dynamics simulation of the hydration shell of a B-DNA decamer reveals two main types of minor-groove hydration depending on groove width

scientific article published on January 1991

Molecular modelling approaches for cystic fibrosis transmembrane conductance regulator studies

scientific article published on 13 April 2014

Novel calcineurin A (PPP3CA) variant associated with epilepsy, constitutive enzyme activation and downregulation of protein expression

scientific article published on 25 September 2018

Open Drug Discovery Toolkit (ODDT): a new open-source player in the drug discovery field

scientific article (publication date: 2015)

Plant MicroRNAs-Novel Players in Natural Medicine?

scientific article

Proteins contribute insignificantly to the intrinsic buffering capacity of yeast cytoplasm

scientific article published in December 2012

Rattlesnake Phospholipase A2 Increases CFTR-Chloride Channel Current and Corrects ∆F508CFTR Dysfunction: Impact in Cystic Fibrosis

scientific article published on 27 May 2016

Residue solvent accessibilities in the unfolded polypeptide chain

scientific article published on December 1992

Self-association of bovine pancreatic trypsin inhibitor: Specific or nonspecific? ⬇️

scientific article published on 01 October 1991

Simulations of nucleation and early growth stages of protein crystals

scientific article published on August 1997

Structural models of CFTR-AMPK and CFTR-PKA interactions: R-domain flexibility is a key factor in CFTR regulation

scientific article published on April 2011

Structurally conserved water molecules in ribonuclease T1.

scientific article published in March 1991

The High Throughput Sequence Annotation Service (HT-SAS) - the shortcut from sequence to true Medline words

scientific article published on 16 May 2009

The clinical response to vemurafenib in a patient with a rare BRAFV600DK601del mutation-positive melanoma

scientific article

The effect of transcription and translation initiation frequencies on the stochastic fluctuations in prokaryotic gene expression

scientific article published on 2 November 2000

The evolutionary rate of antibacterial drug targets

scientific article published in 2013

The quantum casimir effect may be a universal force organizing the bilayer structure of the cell membrane

scientific article published on 24 April 2013

The specific guanine binding site of the ribonuclease T1 family enzymes and of G-proteins is modeled in the cocrystal formed by 7-methylguanosine-5'-phosphate and phenylalanine.

scientific article published in August 1989

Theoretical model explaining the relationship between the molecular mass and the activation energy of the enzyme revealed by a large-scale analysis of bioinformatics data

scientific article

Theoretical model of reticulocyte to erythrocyte shape transformation

scientific article published on 20 June 2006

Three-dimensional model of the potyviral genome-linked protein

scientific article published on October 1996

Tools4miRs - one place to gather all the tools for miRNA analysis

scientific article

Transimulation - protein biosynthesis web service

scientific article

Why similar protein sequences encode similar three-dimensional structures?

scientific article (publication date: 23 October 2009)

e-LiSe--an online tool for finding needles in the '(Medline) haystack'.

scientific article published on 5 March 2008

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