List of works by W. John Wilbur

A Study of the Morpho-Semantic Relationship in Medline

scientific article

A strategy for assigning new concepts in the MEDLINE database.

scientific article

A thematic analysis of the AIDS literature.

scientific article

A theoretical basis for large coefficient of variation and bimodality in neuronal interspike interval distributions.

scientific article published in November 1983

A theory of information with special application to search problems

scientific article

Abbreviation definition identification based on automatic precision estimates

scientific article

An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

scientific article published on 17 January 2013

Analysis of biomedical text for chemical names: a comparison of three methods

scientific article

Assisting manual literature curation for protein-protein interactions using BioQRator

scientific article

Author name disambiguation for PubMed

scientific article

Automatic MeSH term assignment and quality assessment

scientific article

Automatic extraction of gene and protein synonyms from MEDLINE and journal articles

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Automatically identifying gene/protein terms in MEDLINE abstracts.

scientific article published in October 2002

BioC implementations in Go, Perl, Python and Ruby

scientific article

BioC viewer: a web-based tool for displaying and merging annotations in BioC

scientific article

BioC: a minimalist approach to interoperability for biomedical text processing

scientific article

BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.

scientific article published in September 2016

BioCreative-2012 virtual issue

scientific article published on 5 December 2012

BioCreative-IV virtual issue

scientific article published on 22 May 2014

Boosting naïve Bayesian learning on a large subset of MEDLINE.

scientific article

Bridging the gap: Incorporating a semantic similarity measure for effectively mapping PubMed queries to documents

scientific article published on 3 October 2017

Classifying protein-protein interaction articles using word and syntactic features

scientific article

Codon equilibrium II: Its use in estimating silent-substitution rates.

scientific article published in January 1984

Comparison of Two Methods for Finding Biomedical Categories in Medline

Corpus-based statistical screening for phrase identification

scientific article

DNA splice site detection: a comparison of specific and general methods.

scientific article

Database resources of the National Center for Biotechnology Information

scientific article (published 2012-01-01)

Database resources of the National Center for Biotechnology Information

scientific article

Database resources of the National Center for Biotechnology Information

scientific article (published 2010-01-01)

Evaluating relevance ranking strategies for MEDLINE retrieval

scientific article

Evaluation of Query Expansion Using MeSH in PubMed

scientific article

Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach

scientific article published on 19 March 2015

Extraction of data deposition statements from the literature: a method for automatically tracking research results

scientific article

Features generated for computational splice-site prediction correspond to functional elements

scientific article

Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora

scientific article

Finding biomedical categories in Medline®.

scientific article

Finding query suggestions for PubMed

scientific article

Finding related sentence pairs in MEDLINE.

scientific article

GENETAG: a tagged corpus for gene/protein named entity recognition

scientific article

GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data

scientific article

Generation of a large gene/protein lexicon by morphological pattern analysis.

scientific article published in January 2004

Genes, themes and microarrays: using information retrieval for large-scale gene analysis.

scientific article published in January 2000

How to Interpret PubMed Queries and Why It Matters

scientific article published on 6 November 2008

How to get the most out of your curation effort

scientific article

Identification of related gene/protein names based on an HMM of name variations

scientific article

Identifying named entities from PubMed for enriching semantic categories

scientific article

Identifying related journals through log analysis

scientific article

Identifying well-formed biomedical phrases in MEDLINE® text

scientific article

Improving a gold standard: treating human relevance judgments of MEDLINE document pairs

scientific article

Improving accuracy for identifying related PubMed queries by an integrated approach

scientific article

Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE

scientific article

LitSense: making sense of biomedical literature at sentence level

scientific article published on 01 July 2019

Machine learning with naturally labeled data for identifying abbreviation definitions

scientific article

MedPost: a part-of-speech tagger for bioMedical text

scientific article published on 08 April 2004

Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms

scientific article

Modeling Actions of PubMed Users with N-Gram Language Models

scientific article published on September 2008

Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users

scientific article published on 20 August 2008

Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus

scientific article

New directions in biomedical text annotation: definitions, guidelines and corpus construction

scientific article

Optimal training sets for Bayesian prediction of MeSH assignment

scientific article

Optimizing graph-based patterns to extract biomedical events from the literature

scientific article published on 30 October 2015

Overview of BioCreative II gene mention recognition

scientific article published on September 2008

Overview of the BioCreative III Workshop

scientific article

PIE the search: searching PubMed literature for protein interaction information

scientific article

Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information

scientific article

PubMed Phrases, an open set of coherent phrases for searching biomedical literature.

scientific article

PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database

scientific article published on 01 January 2019

PubMed related articles: a probabilistic topic-based model for content similarity

scientific article

Rapid similarity searches of nucleic acid and protein data banks

scientific article

Retro: concept-based clustering of biomedical topical sets

scientific article

SPELLING CORRECTION IN THE PUBMED SEARCH ENGINE

scientific article

SemCat: semantically categorized entities for genomics.

scientific article published on January 2006

SplicePort--an interactive splice-site analysis tool

scientific article published on 18 June 2007

Stochastic Gradient Descent and the Prediction of MeSH for PubMed Records

scientific article published on 14 November 2014

Structural footprinting in protein structure comparison: the impact of structural fragments.

scientific article

Tagging gene and protein names in biomedical text

scientific article

The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions

scientific article

The Ineffectiveness of Within - Document Term Frequency in Text Classification

scientific article

The NLM Indexing Initiative

scientific article

The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text

scientific article

The Synergy Between PAV and AdaBoost

scientific article

The dimensions of indexing.

scientific article

The gene normalization task in BioCreative III

scientific article (publication date: 3 October 2011)

The value of parsing as feature generation for gene mention recognition

scientific article published on 02 April 2009

Thematic clustering of text documents using an EM-based approach

scientific article

Using MEDLINE as a knowledge source for disambiguating abbreviations and acronyms in full-text biomedical journal articles.

scientific article

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