List of works - Mohammed AlQuraishi

A multiscale statistical mechanical framework integrates biophysical and genomic data to assemble cancer networks

scientific article

A watershed moment for protein structure prediction

scientific article published on 01 January 2020

AlphaFold at CASP13

scientific article published on 01 November 2019

An affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system

scientific article published on 19 November 2015

Biophysical prediction of protein-peptide interactions and signaling networks using machine learning

scientific article published on 06 January 2020

Differentiable biology: using deep learning for biophysics-based and data-driven modeling of molecular mechanisms

scientific article published on 04 October 2021

Direct inference of protein–DNA interactions using compressed sensing methods ⬇️

scientific article published on August 8, 2011

End-to-End Differentiable Learning of Protein Structure

scientific article published on 17 April 2019

OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization

scientific article published on 14 May 2024

Parallelized Natural Extension Reference Frame: Parallelized Conversion from Internal to Cartesian Coordinates

scientific article published on 07 January 2019

Protein structure prediction by AlphaFold2: are attention and symmetries all you need?

ProteinNet

a standardized data set for machine learning of protein structure

ProteinNet: a standardized data set for machine learning of protein structure.

scientific article published on 11 June 2019

Recombination and lineage-specific mutations led to the emergence of SARS-CoV-2

scientific article

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2

scientific article published on 06 August 2021

Reproducibility will only come with data liberation

scientific article

Three enhancements to the inference of statistical protein‐DNA potentials ⬇️

scientific article published on November 12, 2012

Unified rational protein engineering with sequence-based deep representation learning

scientific article published on 21 October 2019

List of works by Mohammed AlQuraishi

A multiscale statistical mechanical framework integrates biophysical and genomic data to assemble cancer networks

A watershed moment for protein structure prediction

AlphaFold at CASP13

An affinity-structure database of helix-turn-helix: DNA complexes with a universal coordinate system

Biophysical prediction of protein-peptide interactions and signaling networks using machine learning

Differentiable biology: using deep learning for biophysics-based and data-driven modeling of molecular mechanisms

Direct inference of protein–DNA interactions using compressed sensing methods ⬇️

End-to-End Differentiable Learning of Protein Structure

OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization

Parallelized Natural Extension Reference Frame: Parallelized Conversion from Internal to Cartesian Coordinates

Protein structure prediction by AlphaFold2: are attention and symmetries all you need?

ProteinNet

ProteinNet: a standardized data set for machine learning of protein structure.

Recombination and lineage-specific mutations led to the emergence of SARS-CoV-2

Recombination and lineage-specific mutations linked to the emergence of SARS-CoV-2

Reproducibility will only come with data liberation

Three enhancements to the inference of statistical protein‐DNA potentials ⬇️

Unified rational protein engineering with sequence-based deep representation learning