List of works by Michael Hawrylycz

A community-based transcriptomics classification and nomenclature of neocortical cell types

scientific article published on 24 August 2020

A comprehensive transcriptional map of primate brain development.

scientific article published on 13 July 2016

A guide to the BRAIN Initiative Cell Census Network data ecosystem

A high-resolution spatiotemporal atlas of gene expression of the developing mouse brain

scientific article published on 19 June 2014

A mesoscale connectome of the mouse brain

scientific article

A multimodal cell census and atlas of the mammalian primary motor cortex

scientific article

A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale

scientific article (publication date: March 2009)

A taxonomy of transcriptomic cell types across the isocortex and hippocampal formation

scientific article published on 17 May 2021

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

scientific article

Adaptive Image Enhancement for Tracing 3D Morphologies of Neurons and Brain Vasculatures

scientific article published in April 2015

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics

scientific article

Aerobic glycolysis in the human brain is associated with development and neotenous gene expression

scientific article

Allen Brain Atlas: an integrated spatio-temporal portal for exploring the central nervous system

scientific article

An anatomic gene expression atlas of the adult mouse brain

scientific article published on 15 February 2009

An anatomic transcriptional atlas of human glioblastoma.

scientific article

An anatomically comprehensive atlas of the adult human brain transcriptome

scientific article (publication date: 20 September 2012)

Author Correction: Human neocortical expansion involves glutamatergic neuron diversification

scientific article published in 2022

Automatic Tracing of Ultra-Volume of Neuronal Images

Automatic tracing of ultra-volumes of neuronal images

scientific article published in March 2017

BigNeuron: Large-Scale 3D Neuron Reconstruction from Optical Microscopy Images

scientific article

BlastNeuron for Automated Comparison, Retrieval and Clustering of 3D Neuron Morphologies

scientific article

Canonical genetic signatures of the adult human brain

scientific article

Cell-type-based model explaining coexpression patterns of genes in the brain

scientific article published on 25 March 2014

Cell-type-specific consequences of Reelin deficiency in the mouse neocortex, hippocampus, and amygdala

scientific journal article

Cell-type-specific neuroanatomy of cliques of autism-related genes in the mouse brain

scientific article published on 29 May 2015

Cellular anatomy of the mouse primary motor cortex

scientific article

Classification of electrophysiological and morphological neuron types in the mouse visual cortex

scientific article published on 17 June 2019

Clustering of spatial gene expression patterns in the mouse brain and comparison with classical neuroanatomy

scientific article published on 3 September 2009

Common Cell type Nomenclature for the mammalian brain: A systematic, extensible convention ⬇️

journal article from 'arXiv:2006.05406 [q-bio]' published in 2020

Common cell type nomenclature for the mammalian brain

scientific article published on 29 December 2020

Comparative cellular analysis of motor cortex in human, marmoset and mouse

scientific article published on 06 October 2021

Comprehensive cellular-resolution atlas of the adult human brain

scientific article published on 15 July 2016

Comprehensive cellular-resolution atlas of the adult human brain

Comprehensive cellular-resolution atlas of the adult human brain.

scientific article published in February 2017

Conserved cell types with divergent features in human versus mouse cortex

scientific article published in 2019 in Nature

Conserved molecular signatures of neurogenesis in the hippocampal subgranular zone of rodents and primates

scientific article

Correction: Digital Atlasing and Standardization in the Mouse Brain.

scientific article published on 11 February 2011

Cross-modal coherent registration of whole mouse brains

scientific article published in 2021

Digital atlasing and standardization in the mouse brain

scientific article

Discovery of functional noncoding elements by digital analysis of chromatin structure

scholarly article

Divergent and nonuniform gene expression patterns in mouse brain

scientific article

Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse

scientific article published in April 2020

Exploration and visualization of connectivity in the adult mouse brain.

scientific article published on 27 January 2015

From Maxwell's equations to the theory of current-source density analysis

scientific article

Generalized leaky integrate-and-fire models classify multiple neuron types

scientific article published on 19 February 2018

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays

scientific article published in July 2006

Genome-wide atlas of gene expression in the adult mouse brain

scientific article

Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries

scientific article

Genomic anatomy of the hippocampus.

scientific article published in December 2008

Global exploratory analysis of massive neuroimaging collections using Microsoft Silverlight PivotViewer

High-throughput localization of functional elements by quantitative chromatin profiling

scientific article

Human neocortical expansion involves glutamatergic neuron diversification

scientific article

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

scientific article published in June 2007

Identification of genetic markers for cortical areas using a Random Forest classification routine and the Allen Mouse Brain Atlas

scientific article published on 04 September 2019

Inferring cortical function in the mouse visual system through large-scale systems neuroscience

scientific article

Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells ⬇️

scientific article published on 01 November 2020

Integration of evidence across human and model organism studies: A meeting report

scientific article published on 24 April 2021

Integration of transcriptomic and cytoarchitectonic data implicates a role for MAOA and TAC1 in the limbic-cortical network.

scientific article published on 24 February 2018

Integrative functional genomic analysis of human brain development and neuropsychiatric risks

scientific article published on 01 December 2018

Large-scale cellular-resolution gene profiling in human neocortex reveals species-specific molecular signatures

scientific article published in April 2012

Large-scale neuroinformatics for in situ hybridization data in the mouse brain.

scientific article

Mapping social behavior-induced brain activation at cellular resolution in the mouse

scientific article

Molecular and anatomical signatures of sleep deprivation in the mouse brain ⬇️

scientific article published on October 21, 2010

Morphological diversity of single neurons in molecularly defined cell types

scientific article

Multi-scale correlation structure of gene expression in the brain

scientific article published on 25 June 2011

NeuroBlast: a 3D spatial homology search tool for gene expression.

scientific article

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas

scientific article

New light on cortical neuropeptides and synaptic network plasticity

scientific article published on 14 July 2020

Publisher Correction: A community-based transcriptomics classification and nomenclature of neocortical cell types

scientific article published on 04 December 2020

Quantitative methods for genome-scale analysis of in situ hybridization and correlation with microarray data

scientific article

Reconstructing the brain: from image stacks to neuron synthesis

scientific article

Shared and distinct transcriptomic cell types across neocortical areas

scientific article published in Nature

Single-cell transcriptomic evidence for dense intracortical neuropeptide networks

scientific article published on 11 November 2019

SmartScope2: Simultaneous Imaging and Reconstruction of Neuronal Morphology.

scientific article published on 24 August 2017

Surface-based mapping of gene expression and probabilistic expression maps in the mouse cortex

scientific article published on 8 October 2009

Systematic generation of biophysically detailed models for diverse cortical neuron types

scientific article published on 19 February 2018

TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain

scientific article published on 02 August 2019

The Allen Mouse Brain Common Coordinate Framework: A 3D Reference Atlas

scientific article published on 30 April 2020

Transcriptional architecture of the primate neocortex

scientific article published on 21 March 2012

Transcriptional landscape of the prenatal human brain

scientific article

Transcriptomic Perspectives on Neocortical Structure, Development, Evolution, and Disease

scientific article published on 29 June 2017

Transcriptomic evidence for dense peptidergic neuromodulation networks in mouse cortex

Transcripts with in silico predicted RNA structure are enriched everywhere in the mouse brain

scientific article

Virtual finger boosts three-dimensional imaging and microsurgery as well as terabyte volume image visualization and analysis

scientific article

Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings

scientific article published on 16 October 2014

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