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List of works by David N. Arnosti

A two-scale mathematical model for DNA transcription.

scientific article published on 16 February 2012

Analysis and function of transcriptional regulatory elements: insights from Drosophila

scientific article

Boolean modeling of gene regulatory networks: Driesch redux ⬇️

scientific article published on November 6, 2012

Complex cis-regulatory landscape of the insulin receptor gene underlies the broad expression of a central signaling regulator.

scientific article published on October 2016

Conserved Catalytic and C-Terminal Regulatory Domains of the C-Terminal Binding Protein Corepressor Fine-Tune the Transcriptional Response in Development ⬇️

scientific article published on November 15, 2010

Cori meets Dobzhansky: Evolution and Gene Expression in St. Louis

article

CtBP contributes quantitatively to Knirps repression activity in an NAD binding-dependent manner

scientific article

Deciphering a transcriptional regulatory code: modeling short-range repression in the Drosophila embryo.

scientific article published on 19 January 2010

Developmental expression and phylogenetic conservation of alternatively spliced forms of the C-terminal binding protein corepressor

scientific article published on 21 November 2006

Distinct developmental expression of Drosophila retinoblastoma factors.

scientific article published in February 2005

Diversification of Retinoblastoma Protein Function Associated with Cis and Trans Adaptations

scientific article published on 01 December 2019

Dynamic reprogramming of chromatin: paradigmatic palimpsests and HES factors

scientific article published on 10 February 2015

Enhancer trafficking: free throws and three-pointers

scientific article published in January 2015

Evidence for autoregulation and cell signaling pathway regulation from genome-wide binding of the Drosophila retinoblastoma protein.

scientific article

Fine mapping of chromatin structure in Drosophila melanogaster embryos using micrococcal nuclease

scientific article published on July 2010

Functional interaction between the Drosophila knirps short range transcriptional repressor and RPD3 histone deacetylase

scientific article published on 26 September 2005

Functional similarity of Knirps CtBP-dependent and CtBP-independent transcriptional repressor activities

scientific article

Gene regulation: boundaries within limits

scientific article published in August 2008

Genome-Wide Analysis of Drosophila RBf2 Protein Highlights the Diversity of RB Family Targets and Possible Role in Regulation of Ribosome Biosynthesis

scientific article published on 20 May 2015

Genome-wide errant targeting by Hairy

scientific article

Global parameter estimation for thermodynamic models of transcriptional regulation.

scientific article published on 30 May 2013

Groucho corepressor functions as a cofactor for the Knirps short-range transcriptional repressor

scientific article published on 28 September 2009

Image processing and analysis for quantifying gene expression from early Drosophila embryos

scientific article

Information display by transcriptional enhancers

scientific article published on 01 December 2003

Integrated stability and activity control of the Drosophila Rbf1 retinoblastoma protein.

scientific article

Long- and Short-Range Transcriptional Repressors Induce Distinct Chromatin States on Repressed Genes ⬇️

scientific article published on February 25, 2011

Mathematical modeling of gene expression: a guide for the perplexed biologist ⬇️

scientific article published on April 1, 2011

Melatonin decreases estrogen receptor binding to estrogen response elements sites on the OCT4 gene in human breast cancer stem cells

scientific article published on May 2016

New tools, resources for gene regulatory analysis in Drosophila

scientific article published in March 2007

Nucleosome positioning: an essential component of the enhancer regulatory code?

scientific article published on 01 May 2010

Optimization of reporter gene architecture for quantitative measurements of gene expression in the Drosophila embryo ⬇️

scientific article published on January 1, 2011

Paradoxical Instability–Activity Relationship Defines a Novel Regulatory Pathway for Retinoblastoma Proteins ⬇️

scientific article published on September 22, 2010

Quantitative contributions of CtBP-dependent and -independent repression activities of Knirps

scientific article

Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo

scientific article published on 6 May 2016

Rbf1 degron dysfunction enhances cellular DNA replication

scientific article published on 16 August 2012

Regulation of cell polarity determinants by the Retinoblastoma tumor suppressor protein

scientific article published on 14 March 2016

Retinoblastoma protein regulation by the COP9 signalosome.

scientific article published on 24 January 2007

Role of Drosophila retinoblastoma protein instability element in cell growth and proliferation

scientific article

Role of NAD binding and catalytic residues in the C-terminal binding protein corepressor

scientific article published on 12 October 2007

Selective repression of the Drosophila cyclin B promoter by retinoblastoma and E2F proteins

scientific article published on 07 April 2020

Soft repression: Subtle transcriptional regulation with global impact

scientific article published on 20 November 2020

Spreading of a corepressor linked to action of long-range repressor hairy

scientific article published on 19 February 2008

TWO-LAYER MATHEMATICAL MODELING OF GENE EXPRESSION: INCORPORATING DNA-LEVEL INFORMATION AND SYSTEM DYNAMICS.

scientific article published on March 2013

The Evolutionarily Conserved C-terminal Domains in the Mammalian Retinoblastoma Tumor Suppressor Family Serve as Dual Regulators of Protein Stability and Transcriptional Potency.

scientific article published on 22 April 2015

The Wisdom of Crowds: Can Mathematical Models Crack the cis Regulatory Code?

scientific article published on 23 December 2015

Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects ⬇️

scientific article published on October 24, 2010

Transcriptional Enhancers in Drosophila

scientific article published on 01 September 2020

Transcriptional Regulation of INSR, the Insulin Receptor Gene

scientific article published on 29 November 2019

Transcriptional Repression: Conserved and Evolved Features ⬇️

scientific article published on September 14, 2010

Transcriptional Repressors: Shutting Off Gene Expression at the Source Affects Developmental Dynamics ⬇️

scientific article published on October 25, 2011

Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?

scientific article

Transcriptional perspectives from San Diego

scientific article published on 30 May 2008

Ubiquitination of Retinoblastoma Family Protein 1 Potentiates Gene-specific Repression Function ⬇️

scientific article published on October 18, 2012

cis-regulatory logic of short-range transcriptional repression in Drosophila melanogaster

scientific article published on May 2005

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