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List of works by Aleksey V. Zimin

A High-Resolution SNP Array-Based Linkage Map Anchors a New Domestic Cat Draft Genome Assembly and Provides Detailed Patterns of Recombination

scientific article published on 30 March 2016

A Reference Genome Sequence for Giant Sequoia

scientific article published on 18 September 2020

A new rhesus macaque assembly and annotation for next-generation sequencing analyses.

scientific article

An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

scientific article

Assembly and annotation of an Ashkenazi human reference genome

scientific article published on 02 June 2020

Assembly reconciliation

scientific article published on 5 December 2007

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species ⬇️

scientific article (publication date: 16 May 2012)

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

scientific article

Erratum to: An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing

scientific article published on October 2017

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

GAGE: A critical evaluation of genome assemblies and assembly algorithms

scientific article published on 6 January 2012

Genome assembly and characterization of a complex zfBED-NLR gene-containing disease resistance locus in Carolina Gold Select rice with Nanopore sequencing

scientific article published on 27 January 2020

Genome sequence of the progenitor of the wheat D genome Aegilops tauschii

scientific article

High-quality chromosome-scale assembly of the walnut (Juglans regia L.) reference genome

scientific article published on 01 May 2020

High-quality genome and methylomes illustrate features underlying evolutionary success of oaks

scientific article published on 19 April 2022

Human contamination in bacterial genomes has created thousands of spurious proteins

scientific article published on 07 May 2019

Hybrid assembly of the large and highly repetitive genome of Aegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

scientific article published on 27 January 2017

Improving Phrap-based assembly of the rat using "reliable" overlaps

scientific article

MUMmer4: A fast and versatile genome alignment system

scientific article

Mis-assembled "segmental duplications" in two versions of the Bos taurus genome

scientific article

Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis

scientific article published in 2010

Next-generation sequencing strategies for characterizing the turkey genome

scientific article

Soybean aphid biotype 1 genome: Insights into the invasive biology and adaptive evolution of a major agricultural pest

scientific article published on 25 February 2020

The Douglas-Fir Genome Sequence Reveals Specialization of the Photosynthetic Apparatus in Pinaceae

scientific article published on 27 July 2017

The MaSuRCA genome assembler

scientific article published on 29 August 2013

The SAMBA tool uses long reads to improve the contiguity of genome assemblies

scientific article published on 04 February 2022

The channel catfish genome sequence provides insights into the evolution of scale formation in teleosts

scientific article

The first near-complete assembly of the hexaploid bread wheat genome, Triticum aestivum.

scientific article

The first near-complete assembly of the hexaploid bread wheat genome,Triticum aestivum

The genome polishing tool POLCA makes fast and accurate corrections in genome assemblies

scientific article published on 26 June 2020

Transcriptome assembly from long-read RNA-seq alignments with StringTie2

scientific article published on 16 December 2019

Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation

scientific article

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