List of works by Ruiqiang Li

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

scientific article

A human gut microbial gene catalogue established by metagenomic sequencing

scientific article

Ancient nuclear genomes enable repatriation of Indigenous human remains

scientific article published on 19 December 2018

Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases

scientific article (publication date: October 2008)

Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies

scientific article

De novo assembly of human genomes with massively parallel short read sequencing

scientific article

Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome

scientific article

Design of association studies with pooled or un-pooled next-generation sequencing data

scientific article

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Exome sequencing identifies ZNF644 mutations in high myopia

scientific article published in June 2011

Gene conversion in the rice genome.

scientific article

Genome sequence and analysis of the tuber crop potato

scientific article

Genomic Analyses Reveal Demographic History and Temperate Adaptation of the Newly Discovered Honey Bee Subspecies Apis mellifera sinisxinyuan n. ssp

scientific article

Mapping copy number variation by population-scale genome sequencing

scientific article

Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags

scientific article

Probing meiotic recombination and aneuploidy of single sperm cells by whole-genome sequencing

scientific article

ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun

scientific article

Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield

scientific article published on 07 May 2018

SOAP2: an improved ultrafast tool for short read alignment

scientific article (publication date: August 2009)

SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner

scientific article (publication date: 2013)

SOAP: short oligonucleotide alignment program

scientific article

Sequencing of 50 human exomes reveals adaptation to high altitude

scientific article

SilkDB v2.0: a platform for silkworm (Bombyx mori ) genome biology

scientific article

SilkDB: a knowledgebase for silkworm biology and genomics

scientific article

The DNA methylome of human peripheral blood mononuclear cells

scientific article

The Genomes of Oryza sativa: a history of duplications

scientific article

The analysis of large-scale gene expression correlated to the phase changes of the migratory locust

scientific article

The diploid genome sequence of an Asian individual

scientific article

The genetic basis of white tigers

scientific article

The genome of the cucumber, Cucumis sativus L

scientific article

The genome of the mesopolyploid crop species Brassica rapa

scientific article (publication date: 28 August 2011)

The sequence and de novo assembly of the giant panda genome

scientific article

TreeFam: 2008 Update

scientific article

TreeFam: a curated database of phylogenetic trees of animal gene families

scientific article

Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain.

scientific article

pBACode: a random-barcode-based high-throughput approach for BAC paired-end sequencing and physical clone mapping

scientific article

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