List of works by Arthur L. Delcher

A comparison of whole-genome shotgun-derived mouse chromosome 16 and the human genome

scientific article

A preliminary comparison of the mouse and human genomes

A preprocessor for shotgun assembly of large genomes

scientific article

A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes

scientific article published on 21 July 2007

Aggressive assembly of pyrosequencing reads with mates

scientific article published on 24 October 2008

Assembly of large genomes using second-generation sequencing

scientific article published on 27 May 2010

Comparative genome assembly.

scientific article published in September 2004

Comparative genomics of trypanosomatid parasitic protozoa

scientific article (publication date: 15 July 2005)

Core gene set as the basis of multilocus sequence analysis of the subclass Actinobacteridae

scientific article

Correction: Serendipitous discovery of Wolbachia genomes in multiple Drosophila species

scientific article

DAGchainer: a tool for mining segmental genome duplications and synteny

scientific article published on 9 July 2004

Draft genome of the filarial nematode parasite Brugia malayi

scientific article

Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis

scientific article

Efficient decoding algorithms for generalized hidden Markov model gene finders

scientific article

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Fast algorithms for large-scale genome alignment and comparison ⬇️

scientific article

GAGE: A critical evaluation of genome assemblies and assembly algorithms

scientific article published on 6 January 2012

Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering

scientific article

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

article

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.

scientific article

Genome sequence of the dioxin-mineralizing bacterium Sphingomonas wittichii RW1

scientific article

Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies

scientific article published on 23 December 2011

High-throughput sequence alignment using Graphics Processing Units

scientific article

Human, mouse, and rat genome large-scale rearrangements: stability versus speciation

scientific article published on 13 September 2004

Identifying bacterial genes and endosymbiont DNA with Glimmer

scientific article

Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

scientific article (publication date: October 2003)

MUMmer4: A fast and versatile genome alignment system

scientific article

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote

scientific article

Minimus: a fast, lightweight genome assembler

scientific article

New var reconstruction algorithm exposes high var sequence diversity in a single geographic location in Mali

scientific article

PROBEmer: A web-based software tool for selecting optimal DNA oligos

scientific article

Serendipitous discovery of Wolbachia genomes in multiple Drosophila species

scientific article

Sim4cc: a cross-species spliced alignment program

scientific article published on 08 May 2009

The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease

scientific article

The Sequence of the Human Genome

scientific article

The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion

scientific article published on 2 November 2005

The dog genome: survey sequencing and comparative analysis

scientific article

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

scientific article

The genome of woodland strawberry (Fragaria vesca)

scientific article

Triplet repeat length bias and variation in the human transcriptome

scientific article published on 17 September 2009

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

scientific article

Using MUMmer to identify similar regions in large sequence sets.

scientific article published in February 2003

Versatile and open software for comparing large genomes

scientific article

Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains

scientific article

Whole-genome shotgun assembly and comparison of human genome assemblies

scientific article

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