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List of works by Susan E. Celniker

A Drosophila full-length cDNA resource

scientific article

A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome

scientific article

A protein complex network of Drosophila melanogaster

scientific article published in October 2011

A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm

scientific article published in April 2008

Amplification of PVT1 contributes to the pathophysiology of ovarian and breast cancer.

scientific article

An extracellular interactome of immunoglobulin and LRR proteins reveals receptor-ligand networks.

scientific article

An important class of intron retention events in human erythroblasts is regulated by cryptic exons proposed to function as splicing decoys

scientific article published on 29 June 2018

An integrated host-microbiome response to atrazine exposure mediates toxicity in Drosophila

scientific article published on 24 November 2021

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review

scientific article

Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome

scientific article

Automated protein-DNA interaction screening of Drosophila regulatory elements

scientific article

Benchmarking tools for the alignment of functional noncoding DNA

scientific article

Characterization of MtnE, the fifth metallothionein member in Drosophila

scientific article published on 26 August 2011

Chromatin looping mediates boundary element promoter interactions

scientific article

Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs

article

Comparative analysis of the transcriptome across distant species

scientific article

Comparative validation of the D. melanogaster modENCODE transcriptome annotation.

scientific article

Complete Genome Sequence of Acetobacter pomorum Oregon-R-modENCODE Strain BDGP5, an Acetic Acid Bacterium Found in the Drosophila melanogaster Gut.

scientific article published on 30 November 2017

Complete Genome Sequence of Acetobacter tropicalis Oregon-R-modENCODE Strain BDGP1, an Acetic Acid Bacterium Found in the Drosophila melanogaster Gut.

scientific article published on 16 November 2017

Complete Genome Sequence of Agrobacterium sp. Strain 33MFTa1.1, Isolated from Thlaspi arvense Roots

scientific article published on 12 September 2019

Complete Genome Sequence of Bacillus kochii Oregon-R-modENCODE Strain BDGP4, Isolated from Drosophila melanogaster Gut

scientific article published on 5 October 2017

Complete Genome Sequence of Enterococcus durans Oregon-R-modENCODE Strain BDGP3, a Lactic Acid Bacterium Found in the Drosophila melanogaster Gut.

scientific article published on 5 October 2017

Complete Genome Sequence of Lactobacillus plantarum Oregon-R-modENCODE Strain BDGP2 Isolated from Drosophila melanogaster Gut.

scientific article published on 12 October 2017

Complete Genome Sequence of the Citrobacter freundii Type Strain

scientific article published on 07 May 2020

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura

scientific article

Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy

scientific article (publication date: 2013)

Correction to: DNA copy number evolution in Drosophila cell lines

scientific article published on 11 March 2019

Correction to: Genetic and metabolic links between the murine microbiome and memory

scientific article published on 28 May 2020

Correction: Quantitative Analysis of the Drosophila Segmentation Regulatory Network Using Pattern Generating Potentials

article by Majid Kazemian et al published 24 October 2013 in PLOS Biology

Correction: Transcription Factors Bind Thousands of Active and Inactive Regions in the Drosophila Blastoderm

scientific article published on 29 July 2008

Creation of a minimal tiling path of genomic clones for Drosophila: provision of a common resource

scientific article

DNA copy number evolution in Drosophila cell lines

scientific article

DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila

scientific article published on 10 December 2012

Determination of gene expression patterns using high-throughput RNA in situ hybridization to whole-mount Drosophila embryos

scientific article published on January 2009

Development of Expression-Ready Constructs for Generation of Proteomic Libraries ⬇️

scientific article published on January 1, 2011

Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

scientific article

Diverse hormone response networks in 41 independent Drosophila cell lines

scientific article published on 15 January 2016

Diverse tumour susceptibility in Collaborative Cross mice: identification of a new mouse model for human gastric tumourigenesis

scientific article published on 06 March 2019

Diversity and dynamics of the Drosophila transcriptome

scientific article

Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.

scientific article published on 30 November 2004

Drosophila Histone Demethylase KDM5 Regulates Social Behavior through Immune Control and Gut Microbiota Maintenance

scientific article published on 19 March 2019

Drosophila by the dozen

scientific article published in January 2007

Drosophila telomeric retrotransposons derived from an ancestral element that was recruited to replace telomerase

scientific article

Dynamic reprogramming of chromatin accessibility during Drosophila embryo development

scientific article published on 11 May 2011

Evolution of genes and genomes on the Drosophila phylogeny

scientific article

Evolution of the homeobox complex in the Diptera

scientific article published in August 2003

Exploiting position effects and the gypsy retrovirus insulator to engineer precisely expressed transgenes

scientific article published on 2 March 2008

Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy

article published in the Proceedings of the National Academy of Sciences of the United States of America

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

scientific article

Extensive cross-regulation of post-transcriptional regulatory networks in Drosophila

scientific article

Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence

scientific article

Functional evolution of cis-regulatory modules at a homeotic gene in Drosophila

scientific article

Genetic and metabolic links between the murine microbiome and memory

scientific article published on 17 April 2020

Genome-guided transcript assembly by integrative analysis of RNA sequence data.

scientific article

Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation

scientific article

Genome-wide analysis of promoter architecture in Drosophila melanogaster.

scientific article

Genome-wide identification of zero nucleotide recursive splicing in Drosophila

scientific article published on 13 May 2015

Genomic organization of the Drosophila telomere retrotransposable elements

scientific article

Global Patterns of Tissue-Specific Alternative Polyadenylation in Drosophila

scientific article published in March 2013

Global analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants

scientific article

Global analysis of patterns of gene expression during Drosophila embryogenesis

scientific article published on January 2007

Global patterns of tissue-specific alternative polyadenylation in Drosophila

scientific article

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

scientific article

High-throughput plasmid cDNA library screening

scientific article

Identification and analysis of U5 snRNA variants in Drosophila

scientific article published in October 2005

Identification of genetic factors that modify motor performance and body weight using Collaborative Cross mice

scientific article

Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster

scientific article

Improved mosquito genome points to population-control strategies

scientific article published in Nature

Improved repeat identification and masking in Dipterans

scientific article

In memoriam: Edward B. Lewis (1918-2004).

scientific article

Influence of early life exposure, host genetics and diet on the mouse gut microbiome and metabolome.

scientific article

Lessons from modENCODE.

scientific article published on 26 June 2015

Long-read, whole-genome shotgun sequence data for five model organisms

scientific article

Navigating and mining modENCODE data

scientific article

No difference in 4-nitroquinoline induced tumorigenesis between germ-free and colonized mice

scientific article published on 22 January 2019

OpenHiCAMM: High-Content Screening Software for Complex Microscope Imaging Workflows

scientific article published on 01 April 2018

Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron

scientific article

Posterior patterning genes and the identification of a unique body region in the brine shrimp Artemia franciscana

scientific article published on 15 October 2003

Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials

scientific article

RNA editing in Drosophila melanogaster: New targets and functional consequences

scientific article

Rapid and efficient cDNA library screening by self-ligation of inverse PCR products (SLIP).

scientific article

Regulation of alternative splicing in Drosophila by 56 RNA binding proteins

scientific article

Regulation of early endosomal entry by the Drosophila tumor suppressors Rabenosyn and Vps45.

scientific article published on 6 August 2008

Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes

scientific article

Sequence finishing and mapping of Drosophila melanogaster heterochromatin

scientific article

Spatial expression of transcription factors in Drosophila embryonic organ development

scientific article

Stability-driven nonnegative matrix factorization to interpret spatial gene expression and build local gene networks

scientific article

Susan Celniker: Foundational Resources To Study a Dynamic Genome

scientific article published on November 2016

Systematic determination of patterns of gene expression during Drosophila embryogenesis

scientific article

Systematic image-driven analysis of the spatial Drosophila embryonic expression landscape

scientific article

The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes

scientific article

The Drosophila melanogaster genome

scientific article

The Release 6 reference sequence of the Drosophila melanogaster genome.

scientific article

The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors

scientific article published on 28 December 2017

The transcriptional diversity of 25 Drosophila cell lines

scientific article

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

scientific article

Tools for neuroanatomy and neurogenetics in Drosophila

scholarly article

Transcription factor networks in Drosophila melanogaster

scientific article

Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm

scientific article

Unlocking the secrets of the genome

scientific article

Y chromosome and other heterochromatic sequences of the Drosophila melanogaster genome: how far can we go?

scientific article

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