List of works - Naohiro Kobayashi

(1)H, (13)C, and (15)N resonance assignments of the dsRBDs of mouse RNA helicase A.

scientific article

(1)H, (15)N and (13)C resonance assignments of the conserved region in the middle domain of S. pombe Sin1 protein.

scientific article published on 8 March 2014

A TAF4-homology domain from the corepressor ETO is a docking platform for positive and negative regulators of transcription

scientific article

An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database

scientific article

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

scientific article

Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists

scientific article

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

scientific article

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

scientific article

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

scientific article (publication date: March 2017)

Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA.

scientific article published on 12 February 2018

Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins

scientific article

RBFOX and SUP-12 sandwich a G base to cooperatively regulate tissue-specific splicing

scientific article

Solution Structure of Vanabin2, a Vanadium(IV)-Binding Protein from the Vanadium-Rich AscidianAscidiasydneiensis samea

scholarly article by Toshiyuki Hamada et al published March 2005 in Journal of the American Chemical Society

Solution structure of the GUCT domain from human RNA helicase II/Gu beta reveals the RRM fold, but implausible RNA interactions

scientific article

Solution structure of the RNA binding domain in the human muscleblind-like protein 2

scientific article

Solution structure of the RWD domain of the mouse GCN2 protein

scientific article published on August 2004

Solution structure of the cysteine-rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily

scientific article

Solution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment

scientific article (publication date: February 2017)

Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.

scientific article

Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode

scientific article

Solution structure of the splicing factor motif of the human Prp18 protein

scholarly article by Fahu He published in December 2011

Solution structures of the double-stranded RNA-binding domains from RNA helicase A

scientific article

Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA.

scientific article published on 19 July 2017

Structural and functional characterization of the NHR1 domain of the Drosophila neuralized E3 ligase in the notch signaling pathway

scientific article

Structural basis for inhibition of the MDM2:p53 interaction by an optimized MDM2-binding peptide selected with mRNA display

scientific article

Structural basis for the dual RNA-recognition modes of human Tra2- RRM

scientific article

Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3

scientific article

Structural insight into the interaction of ADP-ribose with the PARP WWE domains

scientific article published on 22 September 2012

Structural insight into the zinc finger CW domain as a histone modification reader

scientific article

Structure and real-time monitoring of the enzymatic reaction of APOBEC3G which is involved in anti-HIV activity

scientific article published in January 2009

Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions

scientific article

Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

scientific article

Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

scientific article published on January 2011

The C113D mutation in human Pin1 causes allosteric structural changes in the phosphate binding pocket of the PPIase domain through the tug of war in the dual-histidine motif

scientific article

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

scientific article

Validation of Structures in the Protein Data Bank

scientific article published on 21 November 2017

nmrML: a community supported open data standard for the description, storage, and exchange of NMR data

scientific article published on 16 October 2017

List of works by Naohiro Kobayashi

(1)H, (13)C, and (15)N resonance assignments of the dsRBDs of mouse RNA helicase A.

(1)H, (15)N and (13)C resonance assignments of the conserved region in the middle domain of S. pombe Sin1 protein.

A TAF4-homology domain from the corepressor ETO is a docking platform for positive and negative regulators of transcription

An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database

KUJIRA, a package of integrated modules for systematic and interactive analysis of NMR data directed to high-throughput NMR structure studies.

Modern Technologies of Solution Nuclear Magnetic Resonance Spectroscopy for Three-dimensional Structure Determination of Proteins Open Avenues for Life Scientists

NMR Exchange Format: a unified and open standard for representation of NMR restraint data

Novel RNA recognition motif domain in the cytoplasmic polyadenylation element binding protein 3

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

Plastic roles of phenylalanine and tyrosine residues of TLS/FUS in complex formation with the G-quadruplexes of telomeric DNA and TERRA.

Publication of nuclear magnetic resonance experimental data with semantic web technology and the application thereof to biomedical research of proteins

RBFOX and SUP-12 sandwich a G base to cooperatively regulate tissue-specific splicing

Solution Structure of Vanabin2, a Vanadium(IV)-Binding Protein from the Vanadium-Rich AscidianAscidiasydneiensis samea

Solution structure of the GUCT domain from human RNA helicase II/Gu beta reveals the RRM fold, but implausible RNA interactions

Solution structure of the RNA binding domain in the human muscleblind-like protein 2

Solution structure of the RWD domain of the mouse GCN2 protein

Solution structure of the cysteine-rich domain in Fn14, a member of the tumor necrosis factor receptor superfamily

Solution structure of the first RNA recognition motif domain of human spliceosomal protein SF3b49 and its mode of interaction with a SF3b145 fragment

Solution structure of the kinase-associated domain 1 of mouse microtubule-associated protein/microtubule affinity-regulating kinase 3.

Solution structure of the second RNA recognition motif (RRM) domain of murine T cell intracellular antigen-1 (TIA-1) and its RNA recognition mode

Solution structure of the splicing factor motif of the human Prp18 protein

Solution structures of the double-stranded RNA-binding domains from RNA helicase A

Structural Insight into the Recognition of r(UAG) by Musashi-1 RBD2, and Construction of a Model of Musashi-1 RBD1-2 Bound to the Minimum Target RNA.

Structural and functional characterization of the NHR1 domain of the Drosophila neuralized E3 ligase in the notch signaling pathway

Structural basis for inhibition of the MDM2:p53 interaction by an optimized MDM2-binding peptide selected with mRNA display

Structural basis for the dual RNA-recognition modes of human Tra2- RRM

Structural basis for the sequence-specific RNA-recognition mechanism of human CUG-BP1 RRM3

Structural insight into the interaction of ADP-ribose with the PARP WWE domains

Structural insight into the zinc finger CW domain as a histone modification reader

Structure and real-time monitoring of the enzymatic reaction of APOBEC3G which is involved in anti-HIV activity

Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions

Structure, interaction and real-time monitoring of the enzymatic reaction of wild-type APOBEC3G

Structures of the first and second double-stranded RNA-binding domains of human TAR RNA-binding protein

The C113D mutation in human Pin1 causes allosteric structural changes in the phosphate binding pocket of the PPIase domain through the tug of war in the dual-histidine motif

The RRM domain of poly(A)-specific ribonuclease has a noncanonical binding site for mRNA cap analog recognition

Validation of Structures in the Protein Data Bank

nmrML: a community supported open data standard for the description, storage, and exchange of NMR data