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List of works by Matthew W Hahn

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Evolution of genes and genomes on the Drosophila phylogeny

scientific article
Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

scientific article
The evolution of transcriptional regulation in eukaryotes

scientific article (publication date: September 2003)
Genomic islands of speciation in Anopheles gambiae

scientific article
Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans

scientific article
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures

scientific article
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

scientific article published on June 17, 2014
Sex determination: why so many ways of doing it?

scientific article
Comparative and demographic analysis of orang-utan genomes

scientific article
Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

scientific article published on 22 December 2004
Mosquito genomics. Highly evolvable malaria vectors: the genomes of 16 Anopheles mosquitoes

scientific article published on 27 November 2014
Gene family evolution across 12 Drosophila genomes

scientific article
Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics

scientific article
Distinguishing among evolutionary models for the maintenance of gene duplicates

scientific article
Genomic variation in natural populations of Drosophila melanogaster

scientific article published on 5 June 2012
The evolution of mammalian gene families

scientific article published in 2006
Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

scientific article published on May 24, 2013
Estimating the tempo and mode of gene family evolution from comparative genomic data

scientific article
Gibbon genome and the fast karyotype evolution of small apes

scientific article
How reticulated are species?

scientific article published on 28 December 2015
Convergent evolution of the genomes of marine mammals

scientific article published on 26 January 2015
The life and death of gene families

scientific article
Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication

scientific article
Disentangling the effects of demography and selection in human history

scientific article
Adaptive evolution of young gene duplicates in mammals.

scientific article published on May 2009
Ancient and recent positive selection transformed opioid cis-regulation in humans

scientific article
Extensive Error in the Number of Genes Inferred from Draft Genome Assemblies

scientific article published on December 4, 2014
Random drift and culture change

article
Toward a selection theory of molecular evolution

scientific article
Testing the Ortholog Conjecture with Comparative Functional Genomic Data from Mammals

scientific article published on June 9, 2011
Positive Selection on a Human-Specific Transcription Factor Binding Site Regulating IL4 Expression

scientific article published on 01 December 2003
Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

scientific article
Rates and Genomic Consequences of Spontaneous Mutational Events inDrosophila melanogaster

scientific article published on 03 June 2013
Ecological genomics of Anopheles gambiae along a latitudinal cline: a population-resequencing approach

scientific article published on 29 December 2011
Gene copy-number polymorphism in nature

scientific article published on 30 June 2010
Molecular evolution in large genetic networks: does connectivity equal constraint?

scientific article published in February 2004
"Reverse ecology" and the power of population genomics

scientific article
Pervasive Multinucleotide Mutational Events in Eukaryotes

scientific article published on June 21, 2011
Accelerated rate of gene gain and loss in primates

scientific article
Genomic islands of speciation or genomic islands and speciation?

scientific article published in March 2010
Localization of candidate regions maintaining a common polymorphic inversion (2La) in Anopheles gambiae

scientific article
Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution

scientific article published on January 2007
Revisiting classic clines in Drosophila melanogaster in the age of genomics

scientific article published on June 10, 2015
Female-biased gene expression in the malaria mosquito Anopheles gambiae

scientific article published in March 2005
Very Few RNA and DNA Sequence Differences in the Human Transcriptome

scientific article published on October 12, 2011
Gain and loss of phosphorylation sites in human cancer

scientific article published in August 2008
Irrational exuberance for resolved species trees

scientific article published on 7 December 2015
A complex suite of forces drives gene traffic from Drosophila X chromosomes.

scientific article
Locus- and population-specific selection and differentiation between incipient species of Anopheles gambiae

scientific article published on 17 July 2007
Determining the Null Model for Detecting Adaptive Convergence from Genomic Data: A Case Study using Echolocating Mammals

scientific article published on January 27, 2015

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