List of works - Diego Mauricio Riaño Pachón

A Reductionist Approach Using Primary and Metastatic Cell-Derived Extracellular Vesicles Reveals Hub Proteins Associated with Oral Cancer Prognosis

scientific article published on 27 June 2021

A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements from Arabidopsis thaliana

scientific article

Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition

scientific article published on 23 December 2019

Analysis of Sensitive CO2 Pathways and Genes Related to Carbon Uptake and Accumulation in Chlamydomonas reinhardtii through Genomic Scale Modeling and Experimental Validation

scientific article

Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales.

scientific article

Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane

scientific article published on 07 May 2022

Chromosome 10 in the tomato plant carries clusters of genes responsible for field resistance/defence to Phytophthora infestans.

scientific article published on 9 February 2013

Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.

scientific article

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

scientific article

Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

scientific article

Correction: Genome-Wide Identification of Regulatory Elements and Reconstruction of Gene Regulatory Networks of the Green Alga Chlamydomonas reinhardtii under Carbon Deprivation.

scientific article published on 6 January 2014

Draft Genome Sequence of Komagataeibacter intermedius Strain AF2, a Producer of Cellulose, Isolated from Kombucha Tea.

scientific article published on 3 December 2015

Draft Genome Sequence of Komagataeibacter rhaeticus Strain AF1, a High Producer of Cellulose, Isolated from Kombucha Tea.

scientific article

Draft Genome Sequence of Pseudozyma brasiliensis sp. nov. Strain GHG001, a High Producer of Endo-1,4-Xylanase Isolated from an Insect Pest of Sugarcane.

scientific article

Draft Genome Sequence of Saccharomyces cerevisiae Barra Grande (BG-1), a Brazilian Industrial Bioethanol-Producing Strain

scientific article published on 30 March 2017

Draft Genome Sequence of the Thermophile Thermus filiformis ATCC 43280, Producer of Carotenoid-(Di)glucoside-Branched Fatty Acid (Di)esters and Source of Hyperthermostable Enzymes of Biotechnological Interest.

scientific article published on 14 May 2015

Draft genome sequence of Wickerhamomyces anomalus LBCM1105, isolated from cachaça fermentation

scientific article published on 08 June 2020

Draft genome sequences of clostridium strains native to Colombia with the potential to produce solvents

scientific article published on 21 May 2015

Draft genome sequencing of the sugarcane hybrid SP80-3280.

scientific article published on 9 June 2017

Editorial: Advances in Microalgae Biology and Sustainable Applications.

scientific article published on 21 September 2016

Evolutionary history of the group formerly known as protists using a phylogenomics approach

GabiPD: the GABI primary database--a plant integrative 'omics' database.

scientific article published on 23 September 2008

Gene Co-expression Network Reveals Potential New Genes Related to Sugarcane Bagasse Degradation in RUT-30

article

Gene regulatory networks on transfer entropy (GRNTE): a novel approach to reconstruct gene regulatory interactions applied to a case study for the plant pathogen Phytophthora infestans

scientific article published on 09 April 2019

Genome sequence of the H2-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant

article

Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice

scientific article

Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation.

scientific article

Genome-wide transcriptome analysis of Aspergillus fumigatus exposed to osmotic stress reveals regulators of osmotic and cell wall stresses that are SakAHOG1 and MpkC dependent.

scientific article published on 05 October 2016

Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids

scientific article published in 2021

Green transcription factors: a chlamydomonas overview.

scientific article published on May 2008

Identification of transcription factor genes and their correlation with the high diversity of stramenopiles

scientific article

Identification, classification and transcriptional profiles of dirigent domain-containing proteins in sugarcane.

scientific article

Insights into immune responses in oral cancer through proteomic analysis of saliva and salivary extracellular vesicles.

scientific article

Molecular Evolution of Slow and Quick Anion Channels (SLACs and QUACs/ALMTs).

scientific article

On and Under the Skin: Emerging Basidiomycetous Yeast Infections Caused by Trichosporon Species

scientific article (publication date: July 2015)

Orphan transcripts in Arabidopsis thaliana: identification of several hundred previously unrecognized genes

scientific article published on 01 July 2005

Overexpression of a Sugarcane BAHD Acyltransferase Alters Hydroxycinnamate Content in Maize Cell Wall

scientific article published on 21 April 2021

Phylogenetic analysis of k(+) transporters in bryophytes, lycophytes, and flowering plants indicates a specialization of vascular plants.

scientific article published on 2 August 2012

Physiological and transcriptional analyses of developmental stages along sugarcane leaf

scientific article published on 29 December 2015

PlnTFDB: an integrative plant transcription factor database

scientific article

PlnTFDB: updated content and new features of the plant transcription factor database

scientific article published on 25 October 2009

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana

scientific article

Pseudozyma brasiliensis sp. nov., a xylanolytic, ustilaginomycetous yeast species isolated from an insect pest of sugarcane roots.

scientific article

QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR.

scientific article

RNAseq reveals hydrophobins that are involved in the adaptation of Aspergillus nidulans to lignocellulose.

scientific article published on 19 July 2016

Structural and functional characterization of a highly secreted α-l-arabinofuranosidase (GH62) from Aspergillus nidulans grown on sugarcane bagasse.

scientific article

The Aspergillus fumigatus SchASCH9 kinase modulates SakAHOG1 MAP kinase activity and it is essential for virulence

scientific article published on 19 August 2016

The Chlamydomonas genome reveals the evolution of key animal and plant functions

scientific article

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

scientific article

The experience of teaching introductory programming skills to bioscientists in Brazil

scientific article published on 11 November 2021

The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes

scientific article published in 2008

The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics

scientific article published on 24 September 2019

Transcriptome and secretome analysis of Aspergillus fumigatus in the presence of sugarcane bagasse.

scientific article published on 3 April 2018

ploidyNGS: Visually exploring ploidy with Next Generation Sequencing data

scientific article

List of works by Diego Mauricio Riaño Pachón

A Reductionist Approach Using Primary and Metastatic Cell-Derived Extracellular Vesicles Reveals Hub Proteins Associated with Oral Cancer Prognosis

A step-by-step protocol for formaldehyde-assisted isolation of regulatory elements from Arabidopsis thaliana

Analysis of NAC Domain Transcription Factor Genes of Tectona grandis L.f. Involved in Secondary Cell Wall Deposition

Analysis of Sensitive CO2 Pathways and Genes Related to Carbon Uptake and Accumulation in Chlamydomonas reinhardtii through Genomic Scale Modeling and Experimental Validation

Annotation of a hybrid partial genome of the coffee rust (Hemileia vastatrix) contributes to the gene repertoire catalog of the Pucciniales.

Bioinformatic analyses to uncover genes involved in trehalose metabolism in the polyploid sugarcane

Chromosome 10 in the tomato plant carries clusters of genes responsible for field resistance/defence to Phytophthora infestans.

Combined transcription factor profiling, microarray analysis and metabolite profiling reveals the transcriptional control of metabolic shifts occurring during tomato fruit development.

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

Comparative transcriptome analysis reveals different strategies for degradation of steam-exploded sugarcane bagasse by Aspergillus niger and Trichoderma reesei

Correction: Genome-Wide Identification of Regulatory Elements and Reconstruction of Gene Regulatory Networks of the Green Alga Chlamydomonas reinhardtii under Carbon Deprivation.

Draft Genome Sequence of Komagataeibacter intermedius Strain AF2, a Producer of Cellulose, Isolated from Kombucha Tea.

Draft Genome Sequence of Komagataeibacter rhaeticus Strain AF1, a High Producer of Cellulose, Isolated from Kombucha Tea.

Draft Genome Sequence of Pseudozyma brasiliensis sp. nov. Strain GHG001, a High Producer of Endo-1,4-Xylanase Isolated from an Insect Pest of Sugarcane.

Draft Genome Sequence of Saccharomyces cerevisiae Barra Grande (BG-1), a Brazilian Industrial Bioethanol-Producing Strain

Draft Genome Sequence of the Thermophile Thermus filiformis ATCC 43280, Producer of Carotenoid-(Di)glucoside-Branched Fatty Acid (Di)esters and Source of Hyperthermostable Enzymes of Biotechnological Interest.

Draft genome sequence of Wickerhamomyces anomalus LBCM1105, isolated from cachaça fermentation

Draft genome sequences of clostridium strains native to Colombia with the potential to produce solvents

Draft genome sequencing of the sugarcane hybrid SP80-3280.

Editorial: Advances in Microalgae Biology and Sustainable Applications.

Evolutionary history of the group formerly known as protists using a phylogenomics approach

GabiPD: the GABI primary database--a plant integrative 'omics' database.

Gene Co-expression Network Reveals Potential New Genes Related to Sugarcane Bagasse Degradation in RUT-30

Gene regulatory networks on transfer entropy (GRNTE): a novel approach to reconstruct gene regulatory interactions applied to a case study for the plant pathogen Phytophthora infestans

Genome sequence of the H2-producing Clostridium beijerinckii strain Br21 isolated from a sugarcane vinasse treatment plant

Genome-wide analysis of ABA-responsive elements ABRE and CE3 reveals divergent patterns in Arabidopsis and rice

Genome-wide identification of regulatory elements and reconstruction of gene regulatory networks of the green alga Chlamydomonas reinhardtii under carbon deprivation.

Genome-wide transcriptome analysis of Aspergillus fumigatus exposed to osmotic stress reveals regulators of osmotic and cell wall stresses that are SakAHOG1 and MpkC dependent.

Genomic and transcriptomic resources for candidate gene discovery in the Ranunculids

Green transcription factors: a chlamydomonas overview.

Identification of transcription factor genes and their correlation with the high diversity of stramenopiles

Identification, classification and transcriptional profiles of dirigent domain-containing proteins in sugarcane.

Insights into immune responses in oral cancer through proteomic analysis of saliva and salivary extracellular vesicles.

Molecular Evolution of Slow and Quick Anion Channels (SLACs and QUACs/ALMTs).

On and Under the Skin: Emerging Basidiomycetous Yeast Infections Caused by Trichosporon Species

Orphan transcripts in Arabidopsis thaliana: identification of several hundred previously unrecognized genes

Overexpression of a Sugarcane BAHD Acyltransferase Alters Hydroxycinnamate Content in Maize Cell Wall

Phylogenetic analysis of k(+) transporters in bryophytes, lycophytes, and flowering plants indicates a specialization of vascular plants.

Physiological and transcriptional analyses of developmental stages along sugarcane leaf

PlnTFDB: an integrative plant transcription factor database

PlnTFDB: updated content and new features of the plant transcription factor database

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana

Pseudozyma brasiliensis sp. nov., a xylanolytic, ustilaginomycetous yeast species isolated from an insect pest of sugarcane roots.

QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR.

RNAseq reveals hydrophobins that are involved in the adaptation of Aspergillus nidulans to lignocellulose.

Structural and functional characterization of a highly secreted α-l-arabinofuranosidase (GH62) from Aspergillus nidulans grown on sugarcane bagasse.

The Aspergillus fumigatus SchASCH9 kinase modulates SakAHOG1 MAP kinase activity and it is essential for virulence

The Chlamydomonas genome reveals the evolution of key animal and plant functions

The Selaginella genome identifies genetic changes associated with the evolution of vascular plants

The experience of teaching introductory programming skills to bioscientists in Brazil

The role of bZIP transcription factors in green plant evolution: adaptive features emerging from four founder genes

The sugarcane mitochondrial genome: assembly, phylogenetics and transcriptomics

Transcriptome and secretome analysis of Aspergillus fumigatus in the presence of sugarcane bagasse.

ploidyNGS: Visually exploring ploidy with Next Generation Sequencing data