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List of works by John "Scooter" Morris

Affinity purification-mass spectrometry and network analysis to understand protein-protein interactions

scientific article

An Atlas of Peroxiredoxins Created Using an Active Site Profile-Based Approach to Functionally Relevant Clustering of Proteins.

scientific article

Biological network exploration with Cytoscape 3

scientific article

Computational tools for the interactive exploration of proteomic and structural data.

scientific article

Copycat Layout: Network layout alignment via Cytoscape Automation

scientific article published on 10 August 2018

Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data

scientific article published on 19 November 2018

Effects of acute nerve compression on conduction of impulse trains of increasing frequency

scientific article published on 01 February 1985

Enhancing UCSF Chimera through web services

scientific article

Evaluation of methods to assign cell type labels to cell clusters from single-cell RNA-sequencing data

scientific article published on 15 March 2019

GLay: community structure analysis of biological networks

scientific article

Genetic interaction mapping informs integrative structure determination of protein complexes

scientific article published on 01 December 2020

Integrative visual analysis of protein sequence mutations.

scientific article published on 28 August 2014

Prediction of enzymatic pathways by integrative pathway mapping.

scientific article

STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets

scientific article published on 22 November 2018

Ten simple rules to create biological network figures for communication

scientific article published on 26 September 2019

The Cytoscape app article collection.

scientific article published on July 2014

UCSF ChimeraX: Meeting Modern Challenges in Visualization and Analysis.

scientific article published on 14 July 2017

Visualize omics data on networks with Omics Visualizer, a Cytoscape App

scientific article published on 28 February 2020

aMatReader: Importing adjacency matrices via Cytoscape Automation

scientific article published on 10 August 2018

cddApp: a Cytoscape app for accessing the NCBI conserved domain database

scientific article

enhancedGraphics: a Cytoscape app for enhanced node graphics

scientific article published on July 2014

scNetViz: from single cells to networks using Cytoscape

scientific article published on 07 June 2021

setsApp for Cytoscape: Set operations for Cytoscape Nodes and Edges.

scientific article published on July 2014

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