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List of works by David Rasko

A Novel Proteome Microarray Discriminates Targets of Human Antibody Reactivity following Oral Vaccination and Experimental Challenge

scientific article published on 01 August 2018

A divergent Pseudomonas aeruginosa palmitoyltransferase essential for cystic fibrosis-specific lipid A.

scientific article

A transcriptome study of the QseEF two-component system and the QseG membrane protein in enterohaemorrhagic Escherichia coli O157 : H7.

scientific article

AB5075, a Highly Virulent Isolate of Acinetobacter baumannii, as a Model Strain for the Evaluation of Pathogenesis and Antimicrobial Treatments.

scientific article

Analysis of Shigella flexneri Resistance, Biofilm Formation, and Transcriptional Profile in Response to Bile Salts.

scientific article

Autotransporter genes pic and tsh are associated with Escherichia coli strains that cause acute pyelonephritis and are expressed during urinary tract infection

scientific article

Bacillus anthracis comparative genome analysis in support of the Amerithrax investigation

scientific article

Bacterial Factors Associated with Lethal Outcome of Enteropathogenic Escherichia coli Infection: Genomic Case-Control Studies

scientific article published on 15 May 2015

Best Practices for Successfully Writing and Publishing a Genome Announcement in Microbiology Resource Announcements ⬇️

scientific article published on 03 September 2020

Best practices on the differential expression analysis of multi-species RNA-seq

publication published on 29 April 2021

Bugs N the 'hood

scientific article

Characterization of Adherent-Invasive Escherichia coli (AIEC) Outer Membrane Proteins Provides Potential Molecular Markers to Screen Putative AIEC Strains

scientific article published in 2022

Characterization of Klebsiella sp. strain 10982, a colonizer of humans that contains novel antibiotic resistance alleles and exhibits genetic similarities to plant and clinical Klebsiella isolates

scientific article

Chemical sensing in mammalian host-bacterial commensal associations

scientific article

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.

scientific article

Comparative Genomics Provides Insight into the Diversity of the Attaching and Effacing Escherichia coli Virulence Plasmids

scientific article

Comparative Genomics of Atypical Enteropathogenic <i>Escherichia coli</i> from Kittens and Children Identifies Bacterial Factors Associated with Virulence in Kittens

scientific article published on 30 November 2020

Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile

scientific article published on 20 November 2019

Comparative genomic analysis provides insight into the phylogeny and virulence of atypical enteropathogenic Escherichia coli strains from Brazil

scientific article published on 01 June 2020

Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic E. coli

scientific article

Complete genome sequence and comparative metabolic profiling of the prototypical enteroaggregative Escherichia coli strain 042

scientific article published on 20 January 2010

Conservation and global distribution of non-canonical antigens in Enterotoxigenic Escherichia coli

scientific article published on 22 November 2019

Defining the phylogenomics of Shigella species: a pathway to diagnostics

scientific article

Diversity among blaKPC-containing plasmids in Escherichia coli and other bacterial species isolated from the same patients

scientific article published on 06 July 2018

Draft Genome Sequence of Escherichia coli Strain UMD142

scientific article published in 2020

Draft Genome Sequences of Nine Enteropathogenic Escherichia coli Strains from Kenya

scientific article

Draft Genome Sequences of blaKPC-Containing Enterobacter aerogenes, Citrobacter freundii, and Citrobacter koseri Strains.

scientific article published on 22 February 2018

Escherichia coli global gene expression in urine from women with urinary tract infection

scientific article

Examination of 189 Campylobacter Species Isolates from the Global Enteric Multicenter Study

scientific article published on 23 July 2020

Examination of 388 Staphylococcus aureus Isolates from Intensive Care Unit Patients

scientific article published on 14 November 2019

Examination of Staphylococcus aureus Isolates from the Gloves and Gowns of Intensive Care Unit Health Care Workers

scientific article published on 06 August 2020

Exploiting the explosion of information associated with whole genome sequencing to tackle Shiga toxin-producing Escherichia coli (STEC) in global food production systems.

scientific article

Future-Proofing Your Microbiology Resource Announcements Genome Assembly for Reproducibility and Clarity

scientific article published on 05 September 2019

Genetic changes associated with the temporal shift in invasive non-typhoidal Salmonella serovars in Bamako Mali

scientific article published on 06 June 2019

Genome Sequencing of Escherichia coli and Klebsiella pneumoniae Isolates That Harbor the FOX-5 β-Lactamase Gene

scientific article published in 2020

Genome and Functional Characterization of Colonization Factor Antigen I- and CS6-Encoding Heat-Stable Enterotoxin-Only Enterotoxigenic Reveals Lineage and Geographic Variation

scientific article published on 15 January 2019

Genome diversity of Shigella boydii

scientific article

Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

scientific article

Genome sequencing of <i>Pseudomonas aeruginosa</i> strain M2 illuminates traits of an opportunistic pathogen of burn wounds

scientific article published in 2022

Genomic and Phenotypic Diversity among Ten Laboratory Isolates of Pseudomonas aeruginosa PAO1

scientific article published on 11 February 2019

Genomic characterization of enteroaggregative Escherichia coli from children in Mali

scientific article

Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity

scientific article

Genomic diversity of EPEC associated with clinical presentations of differing severity

scientific article

Hybrid error correction and de novo assembly of single-molecule sequencing reads

scientific article

Identification of anthrax toxin genes in a Bacillus cereus associated with an illness resembling inhalation anthrax

scientific article

Insights into enterotoxigenic Escherichia coli diversity in Bangladesh utilizing genomic epidemiology

scientific article

Investigating the Relatedness of Enteroinvasive Escherichia coli to Other E. coli and Shigella Isolates by Using Comparative Genomics.

scientific article published on 06 June 2016

Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species

scientific article published in January 2005

Multiple antimicrobial resistance in plague: an emerging public health risk

scientific article

Origins of the E. coli strain causing an outbreak of hemolytic-uremic syndrome in Germany

scientific article

Patellamide A and C biosynthesis by a microcin-like pathway in Prochloron didemni, the cyanobacterial symbiont of Lissoclinum patella ⬇️

scientific article

Phosphotyrosine-Mediated Regulation of Enterohemorrhagic Escherichia coli Virulence

scientific article published on 27 February 2018

Phylogenetically typing bacterial strains from partial SNP genotypes observed from direct sequencing of clinical specimen metagenomic data.

scientific article

Quantitative PCR for detection of Shigella improves ascertainment of Shigella burden in children with moderate-to-severe diarrhea in low-income countries

scientific article

Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains

scientific article published on 08 September 2020

Responses of the Human Gut Escherichia coli Population to Pathogen and Antibiotic Disturbances

scientific article published on 24 July 2018

Shigella flexneri Adherence Factor Expression in In Vivo-Like Conditions

scientific article published on 13 November 2019

Shigella flexneri effectors OspE1 and OspE2 mediate induced adherence to the colonic epithelium following bile salts exposure ⬇️

scientific article published on May 23, 2012

Standardized metadata for human pathogen/vector genomic sequences

scientific article (publication date: 2014)

Targeted enrichment outperforms other enrichment techniques and enables more multi-species RNA-Seq analyses

scientific article published in Scientific Reports

Targeting QseC signaling and virulence for antibiotic development

scientific article

The Complete Genome of the Atypical Enteropathogenic Escherichia coli Archetype Isolate E110019 Highlights a Role for Plasmids in Dissemination of the Type III Secreted Effector EspT

scientific article published on 19 September 2019

The QseC adrenergic signaling cascade in Enterohemorrhagic E. coli (EHEC)

scientific article

The complete genome sequence of Yersinia pseudotuberculosis IP31758, the causative agent of Far East scarlet-like fever

scientific article

The first decade of microbial genomics: what have we learned and where are we going next?

scientific article

The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1

scientific article

The role of genomics in the identification, prediction, and prevention of biological threats.

scientific article

Transcriptome of swarming Proteus mirabilis

scientific article

Visualization of comparative genomic analyses by BLAST score ratio

scientific article

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species

scientific article

Whole-genome sequences of Bacillus subtilis and close relatives

scientific article

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