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List of works by Joseph G. Ibrahim

A Bayesian hierarchical model for network meta-analysis of multiple diagnostic tests.

scientific article published on 06 June 2017

A Bayesian proportional hazards regression model with non-ignorably missing time-varying covariates ⬇️

scientific article published on October 20, 2010

A Bayesian semiparametric joint hierarchical model for longitudinal and survival data

scientific article

A STATISTICAL MODEL TO ASSESS (ALLELE-SPECIFIC) ASSOCIATIONS BETWEEN GENE EXPRESSION AND EPIGENETIC FEATURES USING SEQUENCING DATA.

scientific article published on January 2016

A bivariate pseudolikelihood for incomplete longitudinal binary data with nonignorable nonmonotone missingness

scientific article

A class of Bayesian shared gamma frailty models with multivariate failure time data

scientific article

A counterfactual p-value approach for benefit-risk assessment in clinical trials

scientific article published on January 2015

A flexible B-spline model for multiple longitudinal biomarkers and survival

scientific article

A general class of Bayesian survival models with zero and nonzero cure fractions

scientific article published in June 2005

A generalized linear mixed model for longitudinal binary data with a marginal logit link function ⬇️

scientific article published on January 1, 2011

A hierarchical testing approach for detecting safety signals in clinical trials

scientific article published on 12 February 2020

A marginal estimate for the overall treatment effect on a survival outcome within the joint modeling framework

scientific article published on 24 August 2020

A new Bayesian joint model for longitudinal count data with many zeros, intermittent missingness, and dropout with applications to HIV prevention trials

scientific article published on 05 November 2019

A note on permutation tests for variance components in multilevel generalized linear mixed models

scientific article published on 2 April 2007

A note on the relationships between multiple imputation, maximum likelihood and fully Bayesian methods for missing responses in linear regression models

scientific article published on July 2014

A note on the validity of statistical bootstrapping for estimating the uncertainty of tensor parameters in diffusion tensor images

scientific article published in October 2008

A practical Bayesian adaptive design incorporating data from historical controls

scientific article published on 22 July 2018

A prognostic signature of G(2) checkpoint function in melanoma cell lines

scientific article published on March 2013

A prognostic signature of defective p53-dependent G1 checkpoint function in melanoma cell lines

scientific article

A statistical analysis of brain morphology using wild bootstrapping

scientific article published on July 2007

A weighted combination of pseudo-likelihood estimators for longitudinal binary data subject to non-ignorable non-monotone missingness

scientific article

A weighted estimating equation for linear regression with missing covariate data

scientific article

Abasic sites preferentially form at regions undergoing DNA replication

scientific article

Amplification of thymidylate synthetase in metastatic colorectal cancer patients pretreated with 5-fluorouracil-based chemotherapy

scientific article

An Automated High-throughput Array Microscope for Cancer Cell Mechanics

scientific article

An Extension of the Wilcoxon Rank Sum Test for Complex Sample Survey Data ⬇️

scientific article published on August 1, 2012

Assessing model fit in joint models of longitudinal and survival data with applications to cancer clinical trials

scientific article

Assessing temporal agreement between central and local progression-free survival times

scientific article published in February 2014

Associations between trans fatty acid consumption and colon cancer among Whites and African Americans in the North Carolina colon cancer study I

scientific article

BFLCRM: A BAYESIAN FUNCTIONAL LINEAR COX REGRESSION MODEL FOR PREDICTING TIME TO CONVERSION TO ALZHEIMER'S DISEASE.

scientific article published on December 2015

Basic concepts and methods for joint models of longitudinal and survival data

scientific article

Bayesian Approaches to Joint Cure‐Rate and Longitudinal Models with Applications to Cancer Vaccine Trials ⬇️

scientific article published on September 1, 2003

Bayesian Case Influence Measures for Statistical Models With Missing Data ⬇️

scientific article published on January 1, 2012

Bayesian Case-deletion Model Complexity and Information Criterion

scientific article published in October 2014

Bayesian Design of Noninferiority Trials for Medical Devices Using Historical Data ⬇️

scientific article published on March 1, 2011

Bayesian Generalized Low Rank Regression Models for Neuroimaging Phenotypes and Genetic Markers

scientific article

Bayesian Inference for Multivariate Meta-regression with a Partially Observed Within-Study Sample Covariance Matrix

scientific article published in June 2015

Bayesian Influence Measures for Joint Models for Longitudinal and Survival Data ⬇️

scientific article published on March 4, 2012

Bayesian Meta‐Experimental Design: Evaluating Cardiovascular Risk in New Antidiabetic Therapies to Treat Type 2 Diabetes ⬇️

scientific article published on September 28, 2011

Bayesian Model Assessment in Joint Modeling of Longitudinal and Survival Data with Applications to Cancer Clinical Trials

scientific article

Bayesian Sensitivity Analysis of Statistical Models with Missing Data

scientific article

Bayesian Sensitivity Analysis of a Nonlinear Dynamic Factor Analysis Model with Nonparametric Prior and Possible Nonignorable Missingness

scientific article

Bayesian Variable Selection and Computation for Generalized Linear Models with Conjugate Priors

scientific article published on July 2008

Bayesian analysis for generalized linear models with nonignorably missing covariates

scientific article published in September 2005

Bayesian case influence diagnostics for survival models

scientific article published on 18 April 2008

Bayesian clinical trial design using Markov models with applications to autoimmune disease

scientific article

Bayesian design of a survival trial with a cured fraction using historical data.

scientific article published on 25 June 2018

Bayesian design of superiority clinical trials for recurrent events data with applications to bleeding and transfusion events in myelodyplastic syndrome

scientific article

Bayesian error-in-variable survival model for the analysis of GeneChip arrays

scientific article published in June 2005

Bayesian gamma frailty models for survival data with semi-competing risks and treatment switching ⬇️

scientific article published on March 30, 2013

Bayesian hierarchical modeling for time course microarray experiments

scientific article published in June 2007

Bayesian inference for multivariate meta-analysis Box-Cox transformation models for individual patient data with applications to evaluation of cholesterol-lowering drugs

scientific article

Bayesian influence analysis: a geometric approach

scientific article published on June 2011

Bayesian lasso for semiparametric structural equation models

scientific article

Bayesian local influence for survival models

scientific article published on 06 June 2010

Bayesian longitudinal low-rank regression models for imaging genetic data from longitudinal studies

scientific article

Bayesian methods for missing covariates in cure rate models

scientific article published in June 2002

Bayesian methods in clinical trials: a Bayesian analysis of ECOG trials E1684 and E1690.

scientific article

Bayesian modeling and inference for clinical trials with partial retrieved data following dropout

scientific article

Bayesian multivariate skew meta-regression models for individual patient data

scientific article published on 12 October 2018

Bayesian probability of success for clinical trials using historical data

scientific article

Bayesian sequential meta-analysis design in evaluating cardiovascular risk in a new antidiabetic drug development program

scientific article published on 16 December 2013

Bayesian spatial transformation models with applications in neuroimaging data

scientific article

Bayesian variable selection for the Cox regression model with missing covariates

scientific article

Bias correction for the proportional odds logistic regression model with application to a study of surgical complications

scientific article published on March 2013

Change-point models to estimate the limit of detection

scientific article published on 20 June 2013

Comprehensive assessment of cytochromes P450 and transporter genetics with endoxifen concentration during tamoxifen treatment

scientific article published on 4 September 2017

Consumption of trans-fatty acid and its association with colorectal adenomas

scientific article published on 27 June 2008

Controlling false discovery proportion in identification of drug-related adverse events from multiple system organ classes

scientific article published on 17 July 2019

Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease

scientific article

Cyclobutane Pyrimidine Dimer Density as a Predictive Biomarker of the Biological Effects of Ultraviolet Radiation in Normal Human Fibroblast

scientific article published on 22 October 2013

DNA damage checkpoint responses in the S phase of synchronized diploid human fibroblasts

scientific article published on 24 November 2014

Defective cell cycle checkpoint functions in melanoma are associated with altered patterns of gene expression

scientific article

Development of DNA damage response signaling biomarkers using automated, quantitative image analysis

scientific article published on 05 December 2013

Diagnostic Measures for Generalized Linear Models with Missing Covariates

scientific article published on December 2009

Diagnostic Measures for the Cox Regression Model with Missing Covariates

scientific article published on 4 November 2015

Differential expression analysis with global network adjustment ⬇️

scientific article published on August 23, 2013

Effect of cytotoxic chemotherapy on markers of molecular age in patients with breast cancer

scientific article

Effective intra-S checkpoint responses to UVC in primary human melanocytes and melanoma cell lines

scientific article published on 5 October 2015

Estimating Treatment Effects for Recurrent Events in the Presence of Rescue Medications: An Application to the Immune Thrombocytopenia Study

article

Estimating time-varying effects for overdispersed recurrent events data with treatment switching

scientific article

Estimating treatment effects with treatment switching via semicompeting risks models: an application to a colorectal cancer study ⬇️

scientific article published on December 29, 2011

Estimation and inference for case-control studies with multiple non-gold standard exposure assessments: with an occupational health application

scientific article published on 09 June 2009

Estimation in regression models for longitudinal binary data with outcome-dependent follow-up

scientific article

Expression of p16(INK4a) in peripheral blood T-cells is a biomarker of human aging

scientific article

Fixed and random effects selection in mixed effects models

scientific article

Flexible stopping boundaries when changing primary endpoints after unblinded interim analyses

scientific article published on January 2014

Frailty models with missing covariates

scientific article published in March 2002

Functional Linear Regression Models for Nonignorable Missing Scalar Responses

article

Functional-mixed effects models for candidate genetic mapping in imaging genetic studies

scientific article

Gamma frailty transformation models for multivariate survival times

scientific article

Genotype-guided tamoxifen dosing increases active metabolite exposure in women with reduced CYP2D6 metabolism: a multicenter study

scientific article

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

scientific article published in June 2019

Homology cluster differential expression analysis for interspecies mRNA-Seq experiments

scientific article published on 21 November 2015

Hypothesis testing for two-stage designs with over or under enrollment

scientific article published on 25 March 2015

INK4/ARF transcript expression is associated with chromosome 9p21 variants linked to atherosclerosis

scientific article

Identification of Differentially Expressed Genes in High‐Density Oligonucleotide Arrays Accounting for the Quantification Limits of the Technology ⬇️

scientific article published on September 1, 2003

In silico construction of a protein interaction landscape for nucleotide excision repair

scientific article published on January 2009

In vivo assessment of the metabolic activity of CYP2D6 diplotypes and alleles

scientific article

Intrinsic Regression Models for Manifold-Valued Data

scientific article

Intrinsic Regression Models for Medial Representation of Subcortical Structures

scientific article published on March 2012

Intrinsic Regression Models for Positive-Definite Matrices With Applications to Diffusion Tensor Imaging

scientific article

Is activation of the intra-S checkpoint in human fibroblasts an important factor in protection against UV-induced mutagenesis?

scientific article published on 25 September 2013

JMFit: A SAS Macro for Joint Models of Longitudinal and Survival Data

scientific article

Joint generalized estimating equations for multivariate longitudinal binary outcomes with missing data: An application to AIDS data

scientific article

Joint modeling of longitudinal and survival data with missing and left-censored time-varying covariates

scientific article

Joint modeling of survival and longitudinal non-survival data: current methods and issues. Report of the DIA Bayesian joint modeling working group

scientific article

Joint models for multivariate longitudinal and multivariate survival data

scientific article

LCN: a random graph mixture model for community detection in functional brain networks

scientific article published on January 2017

Local influence for generalized linear models with missing covariates

scientific article

MARM: multiscale adaptive regression models for neuroimaging data

scientific article

MILFM: Multiple index latent factor model based on high-dimensional features

scientific article published on 17 April 2018

Mapping the genetic variation of regional brain volumes as explained by all common SNPs from the ADNI study

scientific article

Maximum Likelihood Inference for the Cox Regression Model with Applications to Missing Covariates

scientific article published on October 2009

Maximum likelihood estimation in generalized linear models with multiple covariates subject to detection limits

scientific article

Maximum likelihood estimation in random effects cure rate models with nonignorable missing covariates

scientific article

Measurement error adjustment in essential fatty acid intake from a food frequency questionnaire: alternative approaches and methods

scientific article

Mechanisms of chromosomal instability in melanoma

scientific article

Meta‐analysis methods and models with applications in evaluation of cholesterol‐lowering drugs ⬇️

scientific article published on July 25, 2012

Missing data in clinical studies: issues and methods

scientific article

Missing data methods in longitudinal studies: a review

scientific article (publication date: May 2009)

Model Selection Criteria for Missing-Data Problems Using the EM Algorithm

scientific article

Modeling event count data in the presence of informative dropout with application to bleeding and transfusion events in myelodysplastic syndrome.

scientific article

Multiscale Adaptive Regression Models for Neuroimaging Data ⬇️

scientific article published on September 1, 2011

Multivariate recurrent events in the presence of multivariate informative censoring with applications to bleeding and transfusion events in myelodysplastic syndrome

scientific article

Network meta-regression for ordinal outcomes: Applications in comparing Crohn's disease treatments

scientific article published on 12 March 2020

On inference of control-based imputation for analysis of repeated binary outcomes with missing data

scientific article

On the estimation of disease prevalence by latent class models for screening studies using two screening tests with categorical disease status verified in test positives only

scientific article

PERTURBATION AND SCALED COOK'S DISTANCE.

scientific article published on January 2012

Parameter estimation in longitudinal studies with outcome-dependent follow-up

scientific article published in September 2002

Pattern mixture models for clinical validation of biomarkers in the presence of missing data.

scientific article

Patterns of cell cycle checkpoint deregulation associated with intrinsic molecular subtypes of human breast cancer cells

scientific article

Post-diagnosis physical activity and survival after breast cancer diagnosis: the Long Island Breast Cancer Study

scientific article

Postdiagnosis Change in Bodyweight and Survival After Breast Cancer Diagnosis ⬇️

scientific article published on March 1, 2012

Projection regression models for multivariate imaging phenotype

scientific article

Properties and Implementation of Jeffreys's Prior in Binomial Regression Models

scientific article published on December 2008

Pseudo-likelihood methods for longitudinal binary data with non-ignorable missing responses and covariates

scientific article

Quantifying the average of the time-varying hazard ratio via a class of transformations

scientific article published on 30 July 2014

Quantifying time-varying cause-specific hazard and subdistribution hazard ratios with competing risks data

scientific article published on 05 June 2019

Regression Models for Identifying Noise Sources in Magnetic Resonance Images

scientific article

Regression Models on Riemannian Symmetric Spaces

scientific article published on 20 March 2016

Rejoinder: Bayesian local influence for survival models

Reply to Comments

scientific article published in April 2016

Responses to discussants of 'Joint modeling of survival and longitudinal non-survival data: current methods and issues. report of the DIA Bayesian joint modeling working group'

scientific article published on June 2015

SPReM: Sparse Projection Regression Model For High-dimensional Linear Regression

scientific article

SR-HARDI: Spatially Regularizing High Angular Resolution Diffusion Imaging

scientific article published on 11 November 2015

Sample size and power determination in joint modeling of longitudinal and survival data

scientific article

Sample size determination in shared frailty models for multivariate time-to-event data

scientific article

Semiparametric models for missing covariate and response data in regression models

scientific article

Separation of intra-S checkpoint protein contributions to DNA replication fork protection and genomic stability in normal human fibroblasts ⬇️

scientific article published on January 15, 2012

Single-nucleotide polymorphisms are associated with cognitive decline at Alzheimer's disease conversion within mild cognitive impairment patients

scientific article

Some Statistical Strategies for DAE-seq Data Analysis: Variable Selection and Modeling Dependencies among Observations

scientific article

Statistical design of noninferiority multiple region clinical trials to assess global and consistent treatment effects

scientific article

Structured measurement error in nutritional epidemiology: applications in the Pregnancy, Infection, and Nutrition (PIN) Study

scientific article published on January 2007

TPRM: Tensor Partition Regression Models with Appilcations in Imaging Biomarker Detection

scientific article published on 11 September 2018

TWO-STAGE EMPIRICAL LIKELIHOOD FOR LONGITUDINAL NEUROIMAGING DATA.

scientific article

Tamoxifen Dose Escalation in Patients With Diminished CYP2D6 Activity Normalizes Endoxifen Concentrations Without Increasing Toxicity

scientific article published on 25 May 2016

The Bayesian Covariance Lasso

scientific article published on April 2013

The effects of nonignorable missing data on label-free mass spectrometry proteomics experiments

The power prior: theory and applications

scientific article

The use of Bayesian hierarchical models for adaptive randomization in biomarker-driven phase II studies

scientific article published on January 2015

Theory and Inference for Regression Models with Missing Responses and Covariates

scientific article published on July 2008

Timeless functions independently of the Tim-Tipin complex to promote sister chromatid cohesion in normal human fibroblasts ⬇️

scientific article published on May 15, 2011

VARIABLE SELECTION FOR REGRESSION MODELS WITH MISSING DATA.

scientific article

Variable selection in the cox regression model with covariates missing at random

scientific article published on 18 May 2009

Wavelet thresholding with bayesian false discovery rate control

scientific article published in March 2005

ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions

scientific article

n-3 Fatty acids, hypertension and risk of cognitive decline among older adults in the Atherosclerosis Risk in Communities (ARIC) study

scientific article published on 12 July 2007

trans-Fatty acid consumption and its association with distal colorectal cancer in the North Carolina Colon Cancer Study II

scientific article

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