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List of works by Filippo Utro

A basic analysis toolkit for biological sequences.

scientific article

A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis.

scientific article

ARG-based genome-wide analysis of cacao cultivars.

scientific article

Author Correction: Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers

scientific article published on 01 December 2019

Comparative exomics of Phalaris cultivars under salt stress

scientific article

Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma

scientific article

Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies

scientific article

Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer

scientific article

Dark-matter matters: Discriminating subtle blood cancers using the darkest DNA

scientific article published on 30 August 2019

Effect of sampling on the extent and accuracy of the inferred genetic history of recombining genome.

scientific article published on 23 January 2014

Enhancing Next-Generation Sequencing-Guided Cancer Care Through Cognitive Computing

scientific article published on 20 November 2017

Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning

scientific article

Functional pathways in respiratory tract microbiome separate COVID-19 from community-acquired pneumonia patients

scientific article published on 03 May 2020

GenomicTools: a computational platform for developing high-throughput analytics in genomics.

scientific article published on 22 November 2011

IRiS: construction of ARG networks at genomic scales

scientific article published on 15 July 2011

In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes

article

Linear time algorithms to construct populations fitting multiple constraint distributions at genomic scales

scientific article

Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers

scientific article published on 09 September 2019

Sampling ARG of multiple populations under complex configurations of subdivision and admixture

scientific article published on 7 December 2015

Speeding up the Consensus Clustering methodology for microarray data analysis

scientific article

Sum of parts is greater than the whole: inference of common genetic history of populations

scientific article

The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes

scientific article published on 16 November 2015

ValWorkBench: an open source Java library for cluster validation, with applications to microarray data analysis.

scientific article

iXora: exact haplotype inferencing and trait association.

scientific article

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