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List of works by Toni Reverter-Gomez

A Boolean-based systems biology approach to predict novel genes associated with cancer: Application to colorectal cancer.

scientific article

A Pathway-Centered Analysis of Pig Domestication and Breeding in Eurasia.

scientific article

A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation.

scientific article

A gene coexpression network for bovine skeletal muscle inferred from microarray data.

scientific article

A genomics-informed, SNP association study reveals FBLN1 and FABP4 as contributing to resistance to fleece rot in Australian Merino sheep.

scientific article

A marker-derived gene network reveals the regulatory role of PPARGC1A, HNF4G, and FOXP3 in intramuscular fat deposition of beef cattle1

article

A multi-trait, meta-analysis for detecting pleiotropic polymorphisms for stature, fatness and reproduction in beef cattle.

scientific article

A rapid method for computationally inferring transcriptome coverage and microarray sensitivity.

scientific article published on 12 August 2004

A regulatory gene network related to the porcine umami taste receptor (TAS1R1/TAS1R3).

scientific article published on 11 November 2015

A single nucleotide polymorphism-derived regulatory gene network underlying puberty in 2 tropical breeds of beef cattle1 ⬇️

scientific article published on February 25, 2011

A systems biology framework integrating GWAS and RNA-seq to shed light on the molecular basis of sperm quality in swine

scientific article published on 08 December 2020

Bias, dispersion, and accuracy of genomic predictions for feedlot and carcase traits in Australian Angus steers

scientific article published in 2021

Candidate genes associated with testicular development, sperm quality, and hormone levels of inhibin, luteinizing hormone, and insulin-like growth factor 1 in Brahman bulls.

scientific article published on 13 September 2012

Characterization of the porcine nutrient and taste receptor gene repertoire in domestic and wild populations across the globe

scientific article

Chicken muscle mitochondrial content appears co-ordinately regulated and is associated with performance phenotypes.

scientific article published on December 2016

Chronic exposure to anabolic steroids induces the muscle expression of oxytocin and a more than fiftyfold increase in circulating oxytocin in cattle.

scientific article published on 15 February 2011

Combining multi-OMICs information to identify key-regulator genes for pleiotropic effect on fertility and production traits in beef cattle

scientific article published in PLoS ONE

Compression distance can discriminate animals by genetic profile, build relationship matrices and estimate breeding values.

scientific article published on 13 October 2015

Construction and validation of a Bovine Innate Immune Microarray.

scientific article

Convergent Evolution of Slick Coat in Cattle through Truncation Mutations in the Prolactin Receptor.

scientific article published on 23 February 2018

Correction to: Bias, dispersion, and accuracy of genomic predictions for feedlot and carcase traits in Australian Angus steers

scientific article published in 2021

Correction: Proteomics of Breast Muscle Tissue Associated with the Phenotypic Expression of Feed Efficiency within a Pedigree Male Broiler Line: I. Highlight on Mitochondria

scientific article published on 19 July 2016

Data compression can discriminate broilers by selection line, detect haplotypes, and estimate genetic potential for complex phenotypes.

scientific article

Detection of chromosome segments of zebu and taurine origin and their effect on beef production and growth.

scientific article published on 4 February 2011

Differential gene expression of wheat progeny with contrasting levels of transpiration efficiency.

scientific article published on August 2006

Divergent ghrelin expression patterns in sheep genetically resistant or susceptible to gastrointestinal nematodes

scientific article published on 11 May 2011

Dominance and epistatic genetic variances for litter size in pigs using genomic models

article

Erratum to: 'Genomic structure and marker-derived gene networks for growth and meat quality traits of Brazilian Nelore beef cattle'.

scientific article published on 13 July 2016

Evaluation of non-additive genetic variation in feed-related traits of broiler chickens

scientific article published on 19 September 2016

Evaluation of nonadditive effects in yearling weight of tropical beef cattle

scientific article published on 01 September 2018

From SNP co-association to RNA co-expression: novel insights into gene networks for intramuscular fatty acid composition in porcine

scientific article

Gastrointestinal nematode challenge induces some conserved gene expression changes in the gut mucosa of genetically resistant sheep

scientific article published on 07 August 2007

Gene expression profiling of bovine skeletal muscle in response to and during recovery from chronic and severe undernutrition

scientific article published on 01 December 2006

Gene expression studies of developing bovine longissimus muscle from two different beef cattle breeds.

scientific article

Gene regulatory network inference: evaluation and application to ovarian cancer allows the prioritization of drug targets ⬇️

scientific article published on May 1, 2012

Genome-wide association for the outcome of fixed-time artificial insemination of Brahman heifers in northern Australia

scientific article

Genome-wide association study for inhibin, luteinizing hormone, insulin-like growth factor 1, testicular size and semen traits in bovine species.

scientific article published on July 2013

Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle ⬇️

scientific article published on January 12, 2011

Genomic Prediction of Breeding Values Using a Subset of SNPs Identified by Three Machine Learning Methods.

scientific article published on 4 July 2018

Genomic correlation: harnessing the benefit of combining two unrelated populations for genomic selection

scientific article

Genomic structure and marker-derived gene networks for growth and meat quality traits of Brazilian Nelore beef cattle

scientific article

Greenlip Abalone (Haliotis laevigata) Genome and Protein Analysis Provides Insights into Maturation and Spawning

scientific article published on 07 October 2019

Identification of Gene Networks for Residual Feed Intake in Angus Cattle Using Genomic Prediction and RNA-seq.

scientific article

Identification of differentially expressed reproductive and metabolic proteins in the female abalone (Haliotis laevigata) gonad following artificial induction of spawning

scientific article published on 4 May 2016

Inferring the in vivo cellular program of developing bovine skeletal muscle from expression data.

scientific article

Information compression exploits patterns of genome composition to discriminate populations and highlight regions of evolutionary interest

scientific article (publication date: 7 March 2014)

Linkage disequilibrium over short physical distances measured in sheep using a high-density SNP chip

scientific article published on 17 July 2014

Longitudinal muscle gene expression patterns associated with differential intramuscular fat in cattle

scientific article published on 13 November 2014

Low frequency of Y anomaly detected in Australian Brahman cow-herds

scientific article

Low-density SNP panel for efficient imputation and genomic selection of milk production and technological traits in dairy sheep

scientific article published in 2022

Mammalian genomic regulatory regions predicted by utilizing human genomics, transcriptomics, and epigenetics data.

scientific article published in March 2018

Meeting Report on the Challenge of Inference from Genome to Phenome

scientific article published in October 2015

Mining tissue specificity, gene connectivity and disease association to reveal a set of genes that modify the action of disease causing genes.

scientific article published on 19 September 2008

Model selection in a global analysis of a microarray experiment.

scientific article published on 10 October 2008

Molecular regulation of high muscle mass in developing Blonde d'Aquitaine cattle foetuses.

scientific article published on 24 August 2017

Multi-Tissue Transcriptome Profiling of North American Derived Atlantic Salmon

scientific article published on 13 September 2018

Multi-tissue omics analyses reveal molecular regulatory networks for puberty in composite beef cattle

scientific article

Muscle-specific gene expression is underscored by differential stressor responses and coexpression changes

scientific article published on 01 September 2011

Nematode challenge induces differential expression of oxidant, antioxidant and mucous genes down the longitudinal axis of the sheep gut.

scientific article published in January 2010

Neuropeptidome of the Hypothalamus and Pituitary Gland of Indicine × Taurine Heifers: Evidence of Differential Neuropeptide Processing in the Pituitary Gland before and after Puberty.

scientific article published on 7 March 2018

Numerical analysis of intensity signals resulting from genotyping pooled DNA samples in beef cattle and broiler chicken.

scientific article published on 18 March 2014

PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches.

scientific article published on 9 December 2009

Parasitic castration by the digenian trematode Allopodocotyle sp. alters gene expression in the brain of the host mollusc Haliotis asinina.

scientific article published on 9 June 2006

Physiology and Endocrinology Symposium: How single nucleotide polymorphism chips will advance our knowledge of factors controlling puberty and aid in selecting replacement beef females

scientific article published on 28 October 2011

Polymorphisms and genes associated with puberty in heifers

scientific article published on 22 April 2016

Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome.

scientific article

Pre- and post-puberty expression of genes and proteins in the uterus of Bos indicus heifers: the luteal phase effect post-puberty

scientific article published on 07 September 2018

Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiency.

scientific article

Prospecting major genes in dairy buffaloes

scientific article published on 28 October 2015

Proteogenomics Reveals Enriched Ribosome Assembly and Protein Translation in Pectoralis major of High Feed Efficiency Pedigree Broiler Males.

scientific article

Proteomic analysis of the abomasal mucosal response following infection by the nematode, Haemonchus contortus, in genetically resistant and susceptible sheep

scientific article published on 25 January 2012

Proteomics of Breast Muscle Tissue Associated with the Phenotypic Expression of Feed Efficiency within a Pedigree Male Broiler Line: I. Highlight on Mitochondria

scientific article published on 31 May 2016

RAPID COMMUNICATION: A haplotype information theory method reveals genes of evolutionary interest in European vs. Asian pigs

scientific article published on 01 July 2018

RNF14 is a regulator of mitochondrial and immune function in muscle.

scientific article published on 29 January 2014

Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data.

scientific article

STAT6, PBX2, and PBRM1 Emerge as Predicted Regulators of 452 Differentially Expressed Genes Associated With Puberty in Brahman Heifers.

scientific article published on 20 March 2018

Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method

article

Sensory rewiring in an echolocator: genome-wide modification of retinogenic and auditory genes in the bat Myotis davidii

scientific article

Sheep genome functional annotation reveals proximal regulatory elements contributed to the evolution of modern breeds

scientific article published on 28 February 2018

Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer.

scientific article published on 24 July 2006

Skeletal muscle specific genes networks in cattle

scientific article published on 04 June 2010

Stress-induced gene expression profiling in the black tiger shrimp Penaeus monodon.

scientific article

Systems biology analysis merging phenotype, metabolomic and genomic data identifies Non-SMC Condensin I Complex, Subunit G (NCAPG) and cellular maintenance processes as major contributors to genetic variability in bovine feed efficiency.

scientific article

The 'heritability' of domestication and its functional partitioning in the pig.

scientific article

The Bos taurus-Bos indicus balance in fertility and milk related genes.

scientific article

The combined effect of SNP-marker and phenotype attributes in genome-wide association studies

scientific article published on 10 December 2008

The evolution of tropical adaptation: comparing taurine and zebu cattle.

scientific article

The extent of linkage disequilibrium in beef cattle breeds using high-density SNP genotypes.

scientific article

The integrity of sperm chromatin in young tropical composite bulls.

scientific article published on 10 April 2012

The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome.

scientific article

Transcriptional profiling of skeletal muscle tissue from two breeds of cattle.

scientific article

Using regulatory and epistatic networks to extend the findings of a genome scan: identifying the gene drivers of pigmentation in merino sheep

scientific article

Utility of multi-omics data to inform genomic prediction of heifer fertility traits

scientific article published in 2022

Variation in genes involved in epigenetic processes offers insights into tropically adapted cattle diversity

scientific article published on 22 April 2014

Weighting genomic and genealogical information for genetic parameter estimation and breeding value prediction in tropical beef cattle.

scientific article published in March 2018

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