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List of works by Murali Ramanathan

A dispersion model for cellular signal transduction cascades

scientific article published in October 2002

A hybrid Markov chain-von Mises density model for the drug-dosing interval and drug holiday distributions

scientific article

A network modeling approach for the spatial distribution and structure of bone mineral content

scientific article

A novel functional module detection algorithm for protein-protein interaction networks

scientific article published on 5 December 2006

A probabilistic framework to predict protein function from interaction data integrated with semantic knowledge

scientific article

A stochastic model for optimizing composite predictors based on gene expression profiles

scientific article published in July 2003

A two-stage search strategy for detecting multiple loci associated with rheumatoid arthritis

scientific article

AMBIENCE: a novel approach and efficient algorithm for identifying informative genetic and environmental associations with complex phenotypes

scientific article

Aging and multiple sclerosis

scientific article published on 19 February 2016

An Information Theory Analysis of Gene-Environmental Interactions in Count/Rate Data ⬇️

scientific article published on May 16, 2012

Analysis of pharmacokinetics, pharmacodynamics, and pharmacogenomics data sets using VizStruct, a novel multidimensional visualization technique

scientific article

Anti-phospholipid antibodies are associated with response to interferon-beta1a treatment in MS: results from a 3-year longitudinal study

scientific article published on October 2012

Application of SPLINDID, a semiparametric, model-based method for pharmacogenomic modeling of mRNA dynamics

scientific article published on 24 March 2006

Arterial, venous and other vascular risk factors in multiple sclerosis ⬇️

scientific article published on October 1, 2012

Assessment of Markov-dependent stochastic models for drug administration compliance

scientific article published in January 2003

Associations of moderate alcohol consumption with clinical and MRI measures in multiple sclerosis

scientific article published on 18 January 2012

Bayesian population modeling of drug dosing adherence

scientific article published on 29 August 2015

BioStar models of clinical and genomic data for biomedical data warehouse design

scientific article

BoneNET: a network model of bone microstructure and dynamics

scientific article published in January 2013

CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactions

scientific article

Cardiovascular risk factors are associated with increased lesion burden and brain atrophy in multiple sclerosis

scientific article

Chronic cerebrospinal vascular insufficiency is not associated with HLA DRB1*1501 status in multiple sclerosis patients

scientific article

Chronic cerebrospinal venous insufficiency in multiple sclerosis: diagnostic, pathogenetic, clinical and treatment perspectives ⬇️

scientific article published on September 1, 2011

Clinical and MRI correlates of autoreactive antibodies in multiple sclerosis patients

scientific article

Clinical correlates of chronic cerebrospinal venous insufficiency in multiple sclerosis

scientific article

Clinical efficacy, effects on MRI and tolerability of weekly intramuscular interferon-beta-1a in patients with MS and CIS.

scientific article

Cognitive impairment is associated with reduced bone mass in multiple sclerosis

scientific article published on 14 March 2012

Commentary: stochastic phenomena in pharmacokinetic, pharmacodynamic and pharmacogenomic models

scientific article published on January 2005

Comparison of information-theoretic to statistical methods for gene-gene interactions in the presence of genetic heterogeneity ⬇️

scientific article published on September 3, 2010

Comparison of the immunomodulatory effects of the plant sterol beta-sitosterol to simvastatin in peripheral blood cells from multiple sclerosis patients

scientific article published on 18 November 2008

Complementary and Alternative Medicine Usage by Multiple Sclerosis Patients: Results from a Prospective Clinical Study

scientific article published on 2 March 2018

Dicer and microRNA expression in multiple sclerosis and response to interferon therapy

scientific article published on 21 January 2016

Dynamics of interferon-beta modulated mRNA biomarkers in multiple sclerosis patients with anti-interferon-beta neutralizing antibodies.

scientific article

ESPD: a pattern detection model underlying gene expression profiles

scientific article published on 29 January 2004

Effect of Met66 allele of the BDNF rs6265 SNP on regional gray matter volumes in patients with multiple sclerosis: A voxel-based morphometry study

scientific article published on 15 May 2010

Effects of diet on brain iron levels among healthy individuals: an MRI pilot study

scientific article published on 17 January 2015

Environmental factors associated with disease progression after the first demyelinating event: results from the multi-center SET study

scientific article

Fourier harmonic approach for visualizing temporal patterns of gene expression data.

scientific article

Gene-environment interactions between HLA B7/A2, EBV antibodies are associated with MRI injury in multiple sclerosis

scientific article

Genetic factors associated with gemcitabine pharmacokinetics, disposition, and toxicity

scientific article

Genomic effects of IFN-beta in multiple sclerosis patients

scientific article published on September 2003

Genomic effects of once-weekly, intramuscular interferon-beta1a treatment after the first dose and on chronic dosing: Relationships to 5-year clinical outcomes in multiple sclerosis patients

scientific article

Humoral Responses to Diverse Autoimmune Disease-Associated Antigens in Multiple Sclerosis

scientific article published on 11 June 2015

Humoral response to EBV is associated with cortical atrophy and lesion burden in patients with MS.

scientific article

Humoral responses to herpesviruses are associated with neurodegeneration after a demyelinating event: results from the multi-center set study

scientific article published on 30 April 2014

Identifying informative risk factors and predicting bone disease progression via deep belief networks

scientific article published on 27 June 2014

Immune cell BDNF secretion is associated with white matter volume in multiple sclerosis

scientific article published on 28 June 2007

Increased albumin quotient (QAlb) in patients after first clinical event suggestive of multiple sclerosis is associated with development of brain atrophy and greater disability 48 months later

scientific article published on 11 September 2015

Inflammation induces neuro-lymphatic protein expression in multiple sclerosis brain neurovasculature

scientific article published on 14 October 2013

Information metrics in genetic epidemiology

scientific article

Information-theoretic gene-gene and gene-environment interaction analysis of quantitative traits

scientific article

Information-theoretic identification of predictive SNPs and supervised visualization of genome-wide association studies

scientific article

Information-theoretic metrics for visualizing gene-environment interactions

scientific article

Inter-dependence of vitamin D levels with serum lipid profiles in multiple sclerosis ⬇️

scientific article published on August 16, 2011

Interactions of serum cholesterol with anti-herpesvirus responses affect disease progression in clinically isolated syndromes

scientific article published on 2 August 2013

Interdependence and contributions of sun exposure and vitamin D to MRI measures in multiple sclerosis

scientific article

Interdependence of oxysterols with cholesterol profiles in multiple sclerosis

scientific article published in September 2016

Interferon inhibitory activity in patients with multiple sclerosis

scientific article published on November 2006

Interferon β for Multiple Sclerosis

scientific article published on 8 January 2018

Interferon-beta modulates bone-associated cytokines and osteoclast precursor activity in multiple sclerosis patients.

scientific article

Iron-related gene variants and brain iron in multiple sclerosis and healthy individuals

scientific article published on 8 November 2017

Lipid profiles are associated with lesion formation over 24 months in interferon-β treated patients following the first demyelinating event

scientific article published on 17 April 2013

Low fat dietary intervention with omega-3 fatty acid supplementation in multiple sclerosis patients.

scientific article

MRI characteristics of familial and sporadic multiple sclerosis patients

scientific article published on 11 December 2012

MRI characteristics of patients with antiphospholipid syndrome and multiple sclerosis

scientific article published on 26 July 2009

MRI segmentation analysis in temporal lobe and idiopathic generalized epilepsy

scientific article

Marijuana Use by Patients with Multiple Sclerosis

Mechanisms of interferon-beta effects on bone homeostasis

scientific article published on 22 January 2009

Multi-agent modeling of the South Korean avian influenza epidemic

scientific article

Multiple Sclerosis Therapies in Pediatric Patients With Refractory Multiple Sclerosis ⬇️

scientific article published on December 13, 2010

Multiple sclerosis in 2011: Advances in therapy, imaging and risk factors in MS.

scientific article published on 10 January 2012

Neurologic Complications of 2009 Influenza-A H1N1 Infection in Children ⬇️

scientific article published on October 12, 2011

Ocrelizumab: a B-cell depleting therapy for multiple sclerosis

scientific article

Optical coherence tomography and neurodegeneration: are eyes the windows to the brain?

scientific article published on 3 May 2016

Osteoporosis and multiple sclerosis: risk factors, pathophysiology, and therapeutic interventions

scientific article published on August 2014

Pharmacogenetics of MXA SNPs in interferon-beta treated multiple sclerosis patients

scientific article published on 27 November 2006

Phosphatidylserine is not just a cleanup crew but also a well-meaning teacher

scientific article published on 9 April 2018

Phytosterols ameliorate clinical manifestations and inflammation in experimental autoimmune encephalomyelitis ⬇️

scientific article published on December 7, 2010

Prediction and Informative Risk Factor Selection of Bone Diseases

scientific article published on January 2015

Preservation of gray matter volume in multiple sclerosis patients with the Met allele of the rs6265 (Val66Met) SNP of brain-derived neurotrophic factor

scientific article published on 26 July 2007

Prospective randomized trial of venous angioplasty in MS (PREMiSe)

scientific article published on 27 June 2014

Protein kinase C polymorphisms and vitamin D levels in multiple sclerosis

scientific article

Reserve-building activities in multiple sclerosis patients and healthy controls: a descriptive study

scientific article published on 12 August 2015

Reserve-related activities and MRI metrics in multiple sclerosis patients and healthy controls: an observational study

scientific article

Retinal nerve fiber layer thickness is associated with brain MRI outcomes in multiple sclerosis

scientific article published on 4 December 2007

Retinal nerve fiber thickness and MRI white matter abnormalities in healthy relatives of multiple sclerosis patients

scientific article

Risk factors for chronic cerebrospinal venous insufficiency (CCSVI) in a large cohort of volunteers

scientific article (publication date: 2011)

Risk of bone loss in men with multiple sclerosis

scientific article published in April 2004

SPLINDID: a semi-parametric, model-based method for obtaining transcription rates and gene regulation parameters from genomic and proteomic expression profiles

scientific article published on 11 August 2005

Semantic integration to identify overlapping functional modules in protein interaction networks

scientific article

Serum lipid profiles are associated with disability and MRI outcomes in multiple sclerosis

scientific article published on 4 October 2011

Serum lipoprotein composition and vitamin D metabolite levels in clinically isolated syndromes: Results from a multi-center study

scientific article published on 17 June 2014

Sex differences in in vitro pro-inflammatory cytokine production from peripheral blood of multiple sclerosis patients

scientific article published in May 2003

Simultaneous determination of oxysterols, cholesterol and 25-hydroxy-vitamin D3 in human plasma by LC-UV-MS

scientific article

Study of mitoxantrone for the treatment of recurrent neuromyelitis optica (Devic disease).

scientific article

The interaction index, a novel information-theoretic metric for prioritizing interacting genetic variations and environmental factors

scientific article

The role of Epstein-Barr virus in multiple sclerosis: from molecular pathophysiology to imaging

The rs2030324 SNP of brain-derived neurotrophic factor (BDNF) is associated with visual cognitive processing in multiple sclerosis

scientific article

Ultrasensitive quantification of serum vitamin D metabolites using selective solid-phase extraction coupled to microflow liquid chromatography and isotope-dilution mass spectrometry.

scientific article

VizStruct for visualization of genome-wide SNP analyses

scientific article published on 13 April 2006

VizStruct: exploratory visualization for gene expression profiling

scientific article

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