List of works - Rong Xu

A Drug-Side Effect Context-Sensitive Network approach for drug target prediction

scientific article published on 01 June 2019

A Semi-Supervised Pattern-Learning Approach to Extract Pharmacogenomics-Specific Drug-Gene Pairs from Biomedical Literature

scholarly article

A genome-wide systems analysis reveals strong link between colorectal cancer and trimethylamine N-oxide (TMAO), a gut microbial metabolite of dietary meat and fat.

scientific article published on 11 June 2015

A genomics-based systems approach towards drug repositioning for rheumatoid arthritis.

scientific article

A knowledge-driven conditional approach to extract pharmacogenomics specific drug-gene relationships from free text

scientific article published on 27 April 2012

A semi-supervised approach to extract pharmacogenomics-specific drug-gene pairs from biomedical literature for personalized medicine.

scientific article

A systems biology approach to predict and characterize human gut microbial metabolites in colorectal cancer

scientific article published on 18 April 2018

An iterative searching and ranking algorithm for prioritising pharmacogenomics genes

scientific article published on 21 February 2013

Association of COVID-19 with respiratory syncytial virus (RSV) infections in children aged 0–5 years in the USA in 2022: a multicentre retrospective cohort study

scientific article published in 2023

Automatic construction of a large-scale and accurate drug-side-effect association knowledge base from biomedical literature.

scientific article

Automatic signal extraction, prioritizing and filtering approaches in detecting post-marketing cardiovascular events associated with targeted cancer drugs from the FDA Adverse Event Reporting System (FAERS)

scientific article published on 28 October 2013

COVID-19 risk and outcomes in patients with substance use disorders: analyses from electronic health records in the United States

scientific article published on 14 September 2020

Combining Human Disease Genetics and Mouse Model Phenotypes towards Drug Repositioning for Parkinson's disease

scientific article published on 5 November 2015

Combining automatic table classification and relationship extraction in extracting anticancer drug-side effect pairs from full-text articles.

scientific article

Combining mechanism-based prediction with patient-based profiling for psoriasis metabolomics biomarker discovery.

scientific article

Combining text classification and Hidden Markov Modeling techniques for categorizing sentences in randomized clinical trial abstracts

scientific article published on January 2006

Comparative analysis of a novel disease phenotype network based on clinical manifestations

scientific article published on 30 September 2014

Comparing a knowledge-driven approach to a supervised machine learning approach in large-scale extraction of drug-side effect relationships from free-text biomedical literature

scientific article

Comparison of outcomes from COVID infection in pediatric and adult patients before and after the emergence of Omicron

Computational advances in cancer informatics (a).

scientific article published on 13 October 2014

Context-sensitive network analysis identifies food metabolites associated with Alzheimer's disease: an exploratory study

scholarly article by Yang Chen & Rong Xu published 31 January 2019 in BMC Medical Genomics

Context-sensitive network-based disease genetics prediction and its implications in drug discovery

scientific article published on 5 January 2017

Correction: COVID-19 risk and outcomes in patients with substance use disorders: analyses from electronic health records in the United States

scientific article published on 30 September 2020

Data-driven multiple-level analysis of gut-microbiome-immune-joint interactions in rheumatoid arthritis

scholarly article by QuanQiu Wang & Rong Xu published 11 February 2019 in BMC Genomics

DenguePredict: An Integrated Drug Repositioning Approach towards Drug Discovery for Dengue

scientific article published on 5 November 2015

Detection of Opioid Users from Reddit Posts via an Attention-based Bidirectional Recurrent Neural Network

scientific article published on 09 September 2024

Disease Comorbidity Network Guides the Detection of Molecular Evidence for the Link Between Colorectal Cancer and Obesity

scientific article published on 23 March 2015

Disease comorbidity-guided drug repositioning: a case study in schizophrenia

scientific article published on 05 December 2018

Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model

scientific article

Dissecting the Ambiguity of FMA Concept Names Using Taxonomy and Partonomy Structural Information

scientific article published on 18 March 2013

Drug repositioning for prostate cancer: using a data-driven approach to gain new insights.

scientific article

Drug repurposing for glioblastoma based on molecular subtypes

scientific article

Epigenetic age acceleration and clinical outcomes in gliomas

scientific article published on 21 July 2020

Evaluating class III antiarrhythmic agents as novel MYC targeting drugs in ovarian cancer

scientific article

Explore Small Molecule-induced Genome-wide Transcriptional Profiles for Novel Inflammatory Bowel Disease Drug

scientific article

Immunotherapy-related adverse events (irAEs): extraction from FDA drug labels and comparative analysis

Integrating Large, Disparate Biomedical Ontologies to Boost Organ Development Network Connectivity

scholarly article

Interrogating Patient-level Genomics and Mouse Phenomics towards Understanding Cytokines in Colorectal Cancer Metastasis

scientific article

Large-scale automatic extraction of side effects associated with targeted anticancer drugs from full-text oncological articles.

scientific article

Large-scale combining signals from both biomedical literature and the FDA Adverse Event Reporting System (FAERS) to improve post-marketing drug safety signal detection.

scientific article published on 15 January 2014

Large-scale extraction of accurate drug-disease treatment pairs from biomedical literature for drug repurposing

scientific article

Large-scale mining disease comorbidity relationships from post-market drug adverse events surveillance data

scholarly article

Merging Ontology Navigation with Query Construction for Web-based Medicare Data Exploration

scientific article

MetabolitePredict: A de novo human metabolomics prediction system and its applications in rheumatoid arthritis

scientific article published on 06 June 2017

Mining cancer-specific disease comorbidities from a large observational health database

scientific article

Mining patterns of adverse events using aggregated clinical trial results

scientific article published on 18 March 2013

Multi-topic assignment for exploratory navigation of consumer health information in NetWellness using formal concept analysis

scientific article

Network Analysis of Human Disease Comorbidity Patterns Based on Large-Scale Data Mining

scholarly article

Network-based gene prediction for Plasmodium falciparum malaria towards genetics-based drug discovery

scientific article published on 11 June 2015

Ontology-guided organ detection to retrieve web images of disease manifestation: towards the construction of a consumer-based health image library

scientific article

PhenoPredict: A disease phenome-wide drug repositioning approach towards schizophrenia drug discovery

scientific article

Phenome-based gene discovery provides information about Parkinson's disease drug targets

scientific article

Phenome-driven disease genetics prediction toward drug discovery.

scientific article

Predict drug permeability to blood-brain-barrier from clinical phenotypes: drug side effects and drug indications.

scientific article published on 19 December 2016

Predicting cancer origins with a DNA methylation-based deep neural network model

scientific article published on 08 May 2020

Semi-supervised image classification for automatic construction of a health image library

scholarly article

SimQ: real-time retrieval of similar consumer health questions

scientific article

The Alzheimer's comorbidity phenome: mining from a large patient database and phenome-driven genetics prediction

article

Toward creation of a cancer drug toxicity knowledge base: automatically extracting cancer drug-side effect relationships from the literature.

scientific article published on 18 May 2013

Towards building a disease-phenotype knowledge base: extracting disease-manifestation relationship from literature.

scientific article

Towards precision medicine-based therapies for glioblastoma: interrogating human disease genomics and mouse phenotypes

scientific article

Towards understanding brain-gut-microbiome connections in Alzheimer's disease

scientific article

Unsupervised method for automatic construction of a disease dictionary from a large free text collection.

scientific article

Using a novel computational drug-repositioning approach (DrugPredict) to rapidly identify potent drug candidates for cancer treatment

scientific article published on 2 October 2017

VINSIA: visual navigator for surgical information access.

scientific article

dRiskKB: a large-scale disease-disease risk relationship knowledge base constructed from biomedical text.

scientific article

tcTKB: an integrated cardiovascular toxicity knowledge base for targeted cancer drugs

scientific article published on 5 November 2015

List of works by Rong Xu

A Drug-Side Effect Context-Sensitive Network approach for drug target prediction

A Semi-Supervised Pattern-Learning Approach to Extract Pharmacogenomics-Specific Drug-Gene Pairs from Biomedical Literature

A genome-wide systems analysis reveals strong link between colorectal cancer and trimethylamine N-oxide (TMAO), a gut microbial metabolite of dietary meat and fat.

A genomics-based systems approach towards drug repositioning for rheumatoid arthritis.

A knowledge-driven conditional approach to extract pharmacogenomics specific drug-gene relationships from free text

A semi-supervised approach to extract pharmacogenomics-specific drug-gene pairs from biomedical literature for personalized medicine.

A systems biology approach to predict and characterize human gut microbial metabolites in colorectal cancer

An iterative searching and ranking algorithm for prioritising pharmacogenomics genes

Association of COVID-19 with respiratory syncytial virus (RSV) infections in children aged 0–5 years in the USA in 2022: a multicentre retrospective cohort study

Automatic construction of a large-scale and accurate drug-side-effect association knowledge base from biomedical literature.

Automatic signal extraction, prioritizing and filtering approaches in detecting post-marketing cardiovascular events associated with targeted cancer drugs from the FDA Adverse Event Reporting System (FAERS)

COVID-19 risk and outcomes in patients with substance use disorders: analyses from electronic health records in the United States

Combining Human Disease Genetics and Mouse Model Phenotypes towards Drug Repositioning for Parkinson's disease

Combining automatic table classification and relationship extraction in extracting anticancer drug-side effect pairs from full-text articles.

Combining mechanism-based prediction with patient-based profiling for psoriasis metabolomics biomarker discovery.

Combining text classification and Hidden Markov Modeling techniques for categorizing sentences in randomized clinical trial abstracts

Comparative analysis of a novel disease phenotype network based on clinical manifestations

Comparing a knowledge-driven approach to a supervised machine learning approach in large-scale extraction of drug-side effect relationships from free-text biomedical literature

Comparison of outcomes from COVID infection in pediatric and adult patients before and after the emergence of Omicron

Computational advances in cancer informatics (a).

Context-sensitive network analysis identifies food metabolites associated with Alzheimer's disease: an exploratory study

Context-sensitive network-based disease genetics prediction and its implications in drug discovery

Correction: COVID-19 risk and outcomes in patients with substance use disorders: analyses from electronic health records in the United States

Data-driven multiple-level analysis of gut-microbiome-immune-joint interactions in rheumatoid arthritis

DenguePredict: An Integrated Drug Repositioning Approach towards Drug Discovery for Dengue

Detection of Opioid Users from Reddit Posts via an Attention-based Bidirectional Recurrent Neural Network

Disease Comorbidity Network Guides the Detection of Molecular Evidence for the Link Between Colorectal Cancer and Obesity

Disease comorbidity-guided drug repositioning: a case study in schizophrenia

Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model

Dissecting the Ambiguity of FMA Concept Names Using Taxonomy and Partonomy Structural Information

Drug repositioning for prostate cancer: using a data-driven approach to gain new insights.

Drug repurposing for glioblastoma based on molecular subtypes

Epigenetic age acceleration and clinical outcomes in gliomas

Evaluating class III antiarrhythmic agents as novel MYC targeting drugs in ovarian cancer

Explore Small Molecule-induced Genome-wide Transcriptional Profiles for Novel Inflammatory Bowel Disease Drug

Immunotherapy-related adverse events (irAEs): extraction from FDA drug labels and comparative analysis

Integrating Large, Disparate Biomedical Ontologies to Boost Organ Development Network Connectivity

Interrogating Patient-level Genomics and Mouse Phenomics towards Understanding Cytokines in Colorectal Cancer Metastasis

Large-scale automatic extraction of side effects associated with targeted anticancer drugs from full-text oncological articles.

Large-scale combining signals from both biomedical literature and the FDA Adverse Event Reporting System (FAERS) to improve post-marketing drug safety signal detection.

Large-scale extraction of accurate drug-disease treatment pairs from biomedical literature for drug repurposing

Large-scale mining disease comorbidity relationships from post-market drug adverse events surveillance data

Merging Ontology Navigation with Query Construction for Web-based Medicare Data Exploration

MetabolitePredict: A de novo human metabolomics prediction system and its applications in rheumatoid arthritis

Mining cancer-specific disease comorbidities from a large observational health database

Mining patterns of adverse events using aggregated clinical trial results

Multi-topic assignment for exploratory navigation of consumer health information in NetWellness using formal concept analysis

Network Analysis of Human Disease Comorbidity Patterns Based on Large-Scale Data Mining

Network-based gene prediction for Plasmodium falciparum malaria towards genetics-based drug discovery

Ontology-guided organ detection to retrieve web images of disease manifestation: towards the construction of a consumer-based health image library

PhenoPredict: A disease phenome-wide drug repositioning approach towards schizophrenia drug discovery

Phenome-based gene discovery provides information about Parkinson's disease drug targets

Phenome-driven disease genetics prediction toward drug discovery.

Predict drug permeability to blood-brain-barrier from clinical phenotypes: drug side effects and drug indications.

Predicting cancer origins with a DNA methylation-based deep neural network model

Semi-supervised image classification for automatic construction of a health image library

SimQ: real-time retrieval of similar consumer health questions

The Alzheimer's comorbidity phenome: mining from a large patient database and phenome-driven genetics prediction

Toward creation of a cancer drug toxicity knowledge base: automatically extracting cancer drug-side effect relationships from the literature.

Towards building a disease-phenotype knowledge base: extracting disease-manifestation relationship from literature.

Towards precision medicine-based therapies for glioblastoma: interrogating human disease genomics and mouse phenotypes

Towards understanding brain-gut-microbiome connections in Alzheimer's disease

Unsupervised method for automatic construction of a disease dictionary from a large free text collection.

Using a novel computational drug-repositioning approach (DrugPredict) to rapidly identify potent drug candidates for cancer treatment

VINSIA: visual navigator for surgical information access.

dRiskKB: a large-scale disease-disease risk relationship knowledge base constructed from biomedical text.

tcTKB: an integrated cardiovascular toxicity knowledge base for targeted cancer drugs