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List of works by Olivier Harismendy

9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response

scientific article published on February 2011

A covering method for detecting genetic associations between rare variants and common phenotypes

scientific article

Accurate detection and genotyping of SNPs utilizing population sequencing data

scientific article

Activation of hedgehog signaling associates with early disease progression in chronic lymphocytic leukemia

scientific article published on 28 March 2019

Autophagy gene haploinsufficiency drives chromosome instability, increases migration, and promotes early ovarian tumors

scientific article published on 10 January 2020

Biochemical, Molecular, and Clinical Characterization of Succinate Dehydrogenase Subunit A Variants of Unknown Significance

scientific article published on 19 July 2017

Biomarkers of endocannabinoid system activation in severe obesity

scientific article

CB-04EPIGENETIC REGULATION OF GLIOBLASTOMA TUMORIGENICITY: A HYBRID MODEL.

scientific article published in November 2014

Correction: Genome-wide mutational landscape of mucinous carcinomatosis peritonei of appendiceal origin

scientific article published on 26 July 2014

Cronkhite Canada Syndrome: Significant Response to Infliximab and a Possible Clue to Pathogenesis

scientific article

Deciphering cell-cell interactions and communication from gene expression

scientific article published on 09 November 2020

Deep mining heterogeneous networks of biomedical linked data to predict novel drug-target associations

scientific article

Detection of low prevalence somatic mutations in solid tumors with ultra-deep targeted sequencing ⬇️

scientific article published on December 20, 2011

EPIG-02DYNAMIC EPIGENETIC MODULATION OF GLIOBLASTOMA TUMORIGENICITY BY INHIBITION OF LYSINE-SPECIFIC DEMETHYLASE 1 (LSD1).

scientific article

Elucidating the role of 8q24 in colorectal cancer

scientific article

Enrichment of sequencing targets from the human genome by solution hybridization

scientific article

Erratum: Corrigendum: Microdroplet-based PCR enrichment for large-scale targeted sequencing

scholarly article by Ryan Tewhey et al published February 2010 in Nature Biotechnology

Evaluating and sharing global genetic ancestry in biomedical datasets

Evaluation of next generation sequencing platforms for population targeted sequencing studies

scientific article published on 27 March 2009

Evaluation of ultra-deep targeted sequencing for personalized breast cancer care

scientific article published on 10 December 2013

Exome-wide analysis of bi-allelic alterations identifies a Lynch phenotype in The Cancer Genome Atlas

scholarly article by Alexandra R Buckley published in September 2018

FGFR1 and NTRK3 actionable alterations in "Wild-Type" gastrointestinal stromal tumors

scientific article published on 14 December 2016

General repression of RNA polymerase III transcription is triggered by protein phosphatase type 2A-mediated dephosphorylation of Maf1.

scientific article

Genetic determinants of phenotypic diversity in humans

scientific article published on 24 April 2008

Genomics in 2011: challenges and opportunities

scientific article published on 28 December 2011

Germline determinants of the somatic mutation landscape in 2,642 cancer genomes

article

HER2-Overexpressing Ductal Carcinoma In Situ Associated with Increased Risk of Ipsilateral Invasive Recurrence, Receptor Discordance with Recurrence

scientific article published on 03 June 2020

HNRNPK maintains epidermal progenitor function through transcription of proliferation genes and degrading differentiation promoting mRNAs

scientific article published on 13 September 2019

Haploinsufficiency networks identify targetable patterns of allelic deficiency in low mutation ovarian cancer

scientific article published on 15 February 2017

Hedgehog pathway dysregulation contributes to the pathogenesis of human gastrointestinal stromal tumors via GLI-mediated activation of KIT expression

scientific article published on 25 October 2016

High-Resolution Mutational Profiling Suggests the Genetic Validity of Glioblastoma Patient-Derived Pre-Clinical Models ⬇️

scientific article published on February 18, 2013

Identification of high-confidence somatic mutations in whole genome sequence of formalin-fixed breast cancer specimens

scientific article

Identification of liver cancer progenitors whose malignant progression depends on autocrine IL-6 signaling

scientific article

Illuminating the Onco-GPCRome: Novel G protein-coupled receptor-driven oncocrine networks and targets for cancer immunotherapy

scientific article published on 05 June 2019

Immune DNA signature of T-cell infiltration in breast tumor exomes.

scientific article

Inhibition of mTOR Signaling and Clinical Activity of Rapamycin in Head and Neck Cancer in a Window of Opportunity Trial

scientific article published on 12 November 2018

Integrative genomic analysis of mouse and human hepatocellular carcinoma

article published in the Proceedings of the National Academy of Sciences of the United States of America

Interaction Between the Contributions of Tumor Location, Tumor Grade, and Patient Age to the Survival Benefit Associated with Gross Total Resection

scientific article published on 5 January 2018

Large-Scale Uniform Analysis of Cancer Whole Genomes in Multiple Computing Environments

Maf1 is involved in coupling carbon metabolism to RNA polymerase III transcription

scientific article published on 4 September 2007

Method for improving sequence coverage uniformity of targeted genomic intervals amplified by LR-PCR using Illumina GA sequencing-by-synthesis technology

scientific article

Microdroplet-based PCR enrichment for large-scale targeted sequencing

scientific article

MutaScope: a high-sensitivity variant caller dedicated to high-throughput PCR amplicons sequencing

Mutational profiling of micro-dissected pre-malignant lesions from archived specimens

scientific article published on 18 November 2020

Network-based analysis identifies epigenetic biomarkers of esophageal squamous cell carcinoma progression

scientific article

Nuclear respiratory factor 1 promotes spheroid survival and mesenchymal transition in mammary epithelial cells

scientific article published on 11 July 2018

Nucleosome depletion activates poised RNA polymerase III at unconventional transcription sites in Saccharomyces cerevisiae

scientific article published on 2 July 2006

Pan-cancer analysis reveals technical artifacts in TCGA germline variant calls

scientific article

PinAPL-Py: A comprehensive web-application for the analysis of CRISPR/Cas9 screens

scientific article

Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level

scientific article

Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs

scientific article

Transcriptome Sequencing of Tumor Subpopulations Reveals a Spectrum of Therapeutic Options for Squamous Cell Lung Cancer ⬇️

scientific article published on March 20, 2013

Use of Liquid Biopsies in Clinical Oncology: Pilot Experience in 168 Patients

scientific article published on 16 May 2016

Whole transcriptome sequencing enables discovery and analysis of viruses in archived primary central nervous system lymphomas

scientific article published on 4 September 2013

iPSCORE: A Resource of 222 iPSC Lines Enabling Functional Characterization of Genetic Variation across a Variety of Cell Types

scientific article

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