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List of works by Adina Howe

A meta-analysis of global fungal distribution reveals climate-driven patterns

scientific article published on 13 November 2019

An improved approach to identify bacterial pathogens to human in environmental metagenome

scientific article published on 18 June 2020

Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)

scientific article (publication date: 2015)

Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application

scientific article published on 19 August 2019

Complexities in understanding antimicrobial resistance across domesticated animal, human, and environmental systems

scientific article published on 01 April 2019

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems

scientific article

Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice

scientific article published on 16 October 2015

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil

scientific article published on 18 September 2017

Frontiers and Opportunities in Bioenergy Crop Microbiome Research Networks

scientific article published in 2022

Identification and Evolution of Cas9 tracrRNAs

Identification of Soil Microbes Capable of Utilizing Cellobiosan

scientific article published on 12 February 2016

Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil

scientific article

Imagining tomorrow's university in an era of open science.

scientific article

Improved detection of mcyA genes and their phylogenetic origins in harmful algal blooms

scientific article published on 19 March 2020

Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems

scientific article published on 17 September 2019

Metagenomic Insights into the Degradation of Resistant Starch by Human Gut Microbiota

scientific article published in 2018

Metagenomic approaches for direct and cell culture evaluation of the virological quality of wastewater

scientific article published on 28 September 2014

Methodologies for probing the metatranscriptome of grassland soil

scientific article

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter

scientific article published on 19 August 2015

Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance

scientific article published on 15 January 2018

Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements

scientific article published on 01 September 2018

RefSoil+: a Reference Database for Genes and Traits of Soil Plasmids

article

Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

scientific article

Seasonal variations in export of antibiotic resistance genes and bacteria in runoff from an agricultural watershed in Iowa

scientific article published on 16 June 2020

Strategies to improve reference databases for soil microbiomes

scientific article published on 09 December 2016

The In-Feed Antibiotic Carbadox Induces Phage Gene Transcription in the Swine Gut Microbiome.

scientific article

The khmer software package: enabling efficient nucleotide sequence analysis

scientific article published on 25 September 2015

The principles of tomorrow's university

Toward Antibiotic Stewardship: Route of Antibiotic Administration Impacts the Microbiota and Resistance Gene Diversity in Swine Feces

scientific article published on 19 May 2020

Workshop: Graph compression approaches in assembly

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